Advanced Search (OLGA)

Gene: Lrrc49 (leucine rich repeat containing 49) Ictidomys tridecemlineatus

Analyze

Symbol:

Lrrc49

Name:

leucine rich repeat containing 49

RGD ID:

12512847

Description:

ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN centriolar satellite (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine rich repeat containing 49, transcript variant X1; leucine rich repeat containing 49, transcript variant X2; leucine rich repeat containing 49, transcript variant X3; leucine-rich repeat-containing protein 49

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	112,568,323 - 112,729,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	30,416,174 - 30,577,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	30,416,179 - 30,578,312 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centriolar satellite (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Lrrc49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	112,568,323 - 112,729,798 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	30,416,174 - 30,577,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	30,416,179 - 30,578,312 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRC49
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	70,853,378 - 71,053,658 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	70,853,239 - 71,053,658 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	71,145,717 - 71,345,997 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	68,972,041 - 69,129,490 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	48,075,878 - 48,233,321 (+)	NCBI		Celera
Cytogenetic Map	15	q23	NCBI
HuRef	15	48,020,472 - 48,177,963 (+)	NCBI		HuRef
CHM1_1	15	71,303,192 - 71,460,675 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	68,676,342 - 68,876,951 (+)	NCBI		T2T-CHM13v2.0

Lrrc49
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	60,494,507 - 60,595,460 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	60,476,142 - 60,595,441 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	60,587,224 - 60,688,167 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	60,568,859 - 60,688,158 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	60,435,036 - 60,535,941 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	60,385,246 - 60,485,917 (-)	NCBI		MGSCv36	mm8
Celera	9	57,812,803 - 57,913,421 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	32.75	NCBI

Lrrc49
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	69,948,962 - 70,056,579 (-)	NCBI		GRCr8
mRatBN7.2	8	61,053,264 - 61,160,695 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	61,053,267 - 61,160,850 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	66,561,249 - 66,668,708 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	64,834,189 - 64,941,267 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	62,703,669 - 62,811,138 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	65,481,584 - 65,587,687 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	65,481,592 - 65,587,658 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	65,233,813 - 65,339,662 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	64,524,550 - 64,631,904 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	64,543,611 - 64,650,971 (-)	NCBI
Celera	8	60,480,044 - 60,587,218 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Lrrc49
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	5,903,266 - 6,030,279 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	5,903,345 - 6,030,279 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRC49
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	60,155,994 - 60,316,144 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	64,319,908 - 64,479,628 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	49,841,934 - 50,023,736 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	68,608,412 - 68,769,334 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	68,589,175 - 68,769,334 (+)	Ensembl	panpan1.1		panPan2

LRRC49
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	34,580,906 - 34,737,181 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	34,581,241 - 34,737,009 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	34,515,159 - 34,673,673 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	34,781,934 - 34,938,531 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	34,782,217 - 34,938,848 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	34,728,801 - 34,893,909 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	34,766,753 - 34,921,966 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	35,018,625 - 35,177,587 (+)	NCBI		UU_Cfam_GSD_1.0

LRRC49
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	168,544,421 - 168,700,891 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	168,553,361 - 168,711,739 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	186,834,369 - 186,981,844 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRC49
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	12,405,249 - 12,568,597 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	12,405,721 - 12,567,987 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	128,921,019 - 129,151,558 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrc49
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	2,848,502 - 2,990,738 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	2,848,567 - 3,007,102 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005316743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005316744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000000947 ⟹ ENSSTOP00000000848

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936471	30,416,610 - 30,577,732 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000033215 ⟹ ENSSTOP00000025834

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936471	30,416,174 - 30,577,874 (+)	Ensembl

RefSeq Acc Id:

XM_005316743 ⟹ XP_005316800

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	112,568,398 - 112,729,798 (+)	NCBI
SpeTri2.0	NW_004936471	30,416,532 - 30,578,312 (+)	NCBI

Sequence:

show sequence

GAGCGGGTTGCCTGGGAGATGACCTCTTGTGGTCTCTCTGAATCTCTGCTGTAGCGTCACCTAG
AAGGCAGATCTAACATCCTGAACTGTCTCCTGCCATGATTCCCGGGAAATACCGCTCTGCTTCT
GGCCGGACTGCAAACAACGTGAACTGTGGGCTTCATCTGGTTATTCAAACATCATCGCTTCCTG
AAAAAAACAAAGTTGAATTCAAGATTAATAGAGAAACATCATCATTTCCTGGAAGACTCTTACA
GCATGACCTTGAAAGAAACTACTCAAGTAGGCAAGGAGATGGAAGAGTAATAAGTCCTTCGCTT
CGTTATAAATCATCATGCATCTCATCCACAACAAACGTGACAGAACTATGTGGGCTGGAAATGA
AAACTGCCACAACCTCCTTATCAGCATTTGGAGATTCTTCCATTCAGACACCTTCAAAGTCCAG
AATTCGGCAGGGATGTCATAGTGCTGGCCCAAATGTATCTGGTGATCATATTAATTTGGTGAGC
TCATCAATGCCATCATTTCCTATTCTTCATCGTTCTTCTGAAGAGAAAATTCTTTACTCAGACA
GATTGACTCTAGAAAGGCAAAAGCTAACGGTTTGCCCTATCATTGATGGAGAAGAACACCTTCG
TTTGTTGAACTTTCAGCACAATTTTATAACTCGGATCCAAAATATTTCAAATTTACAGAGGTTA
ATATTCTTGGATTTATATGATAACCAGATTGAAGAAATTAGTGGGCTTTCTACTTTAAGATCCC
TCCGTGTCCTTCTCTTGGGGAAAAACAGAATCAAGAAAATCTCAAATTTAGAGAATCTAAAAAG
CCTAGATGTTTTGGACCTTCATGGAAATCAGATTACCAGAATTGAAAATGTCAACCATTTGTGT
GATTTGAGAGTTTTGAATCTTGCCAGGAACCTTTTGGGTCAAGTTGATAATCTTAATGGACTGG
ATTCACTAACTGAACTTAACCTGCGACACAATCAAATCACTTCTGTGAGAGATGTGGATACTTT
GCCCTGCCTCCAACGTCTGTTTCTCAGCTTCAATAATATTTCTAGTTTTGACAGTGTTTCCTGT
CTTGCTGACTCTACTTCCCTATCAGACATCACTTTTGATGGCAACCCAATAGCTCAAGAGTCAT
GGTACAAACACACTGTCCTTCAGAATATGATGCAGCTACGCCAGCTAGATATGAAGAGAATCAC
GGAAGAAGAAAGGCGTATGGCATCTGTAGTAGCCAAGAAGGAGGAAGAGAAGAAGCGGGAAAGT
CATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAACAATTAACAACGTAGCTCGAAAGTGGG
ACTTGCAACAACGAGTGGCCAATAACGCTACAAACCCAGATAGAAAAGATTCTGATTCTCCTCC
TCAGGACCCTTGTCAAAGTGATGGAAGCACCATTTCTGCATTTCCAGAAGAAACAGGGTCTCTA
GACTCAGGACTCAACAATGCTTTATTAGGTTTATCTGTCACAGACACATACCTTGTTGAAGTGG
ATGGGGATACACTTTCCCTGTATGGTTCAGGAGCACTAGAATCTCTGGATCGAAATTGGAGTGT
CCAAACAGCAGGAATGGTCACGACAGTCTCCTTCACATTCATAGAGTTTGACGAAATTGTCCAA
GTGCTCCCCAAATTGAAGATGAAGTTTCCTAATTCTCTGCACCTTAAATTTAAGGAAACAAATC
TTATAATGCTGCAGCAATTTAATGCACTAGCCCAACTTCGTCGTATTGACCAGTTGACAATTGA
TCCTCAAGGAAATCCAGTTGTCAATTTTACACTATGGAAATACTATGTACTATTTAGGCTAAGC
CATTTTAGTATGCAGAAAATAAATGGAACAGAGGTGACACAGAATGACATGATAATGGCTGAAA
GGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGAGTTACCTCAATACCGTATGATTTCAAT
TCTGGGTGATGCCAGGAAAAAGCAATTCCGGTATCTATTAGAAACCAAAGGAAAAAAACCTGGC
ATTATCAGTGAAGAAAATAATGATAACAAAAGACTTGTAGGAGAAAACACAAATCGTGCTACAC
TCAATTATACCACAAGAGAATTTTATCATGAAAAGCTAGAGGAAATAAAGGAGAAAAAGAAATT
CTGCAAAATGTATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAATATGAAAAATGAAGCT
TTGCAGAAGCTTTGGCCGCAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATCCGCA
ATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACTGACCAAAAATAGAGAGGGCTTTT
AGTAACCGTTGATTTTGGCAGTTTTACTTTTTTTAAAAGGTTGAAAATATGCAGATTAAATATG
TTAAAACAACATTATCCTACAAACTAGGAAGAGTAGCATCAAACGTTGTTGCCTGTTGTTCTCA
AAGTGAAAGATTAAGAAGGAAAGCAGGAAGAAGGGAGGATTCATTTCATATATGTGTTGACCAG
ATGCTTGGATGTTAGGTTGGCAATGCATCTTCCGTTCTTGCTCTGATCAGAGCCCCCGCTATAG
CCCAAAGCACATGGTATTTGCCGATGGGTCAGCATGAGTTGCTTCTACCTACTTTCAGCTGATG
GTTTTCATTTGTTTGCCTTTTTATTTTATGTCATGATTTCAAAGCCAAAAATATGTTCTTTTTT
ATGAGTGAAGAATAAACTTAATACATTAGTTAAAAAAAATTTTTTTTGCCTCTTTAGTCCAGTC
AGTATTGTCATATTTGATGTATTTTTATGTTCTGCTTTGTTGGGTAGGATCCCTGCTGTTCACC
TACGTGGGAGGAGGCCCCGTTCTTCCAGGGATGTATTTTCAGGGCACAACAGGGAGACCTGGGA
GTCCCTATGGGCAGAGAATATTAAAATAAGTTAATACTAGGATAGAAAGAAGATGCTTGATCTT
AAAAGGATCCTGAGTGAATGTAAAATGCAGTCACAAATCAGTAAGTCTGCTTTGATGAGAGTTG
GTTCCTTCTTATTGACTGCCATGAGGCTCCTTTTATAGGCATGTATGTGTACCTGTATCTTAGA
GGTAATAAGGATATAAGGGTGAAAGTTTCTAATTTTTAAAATTACGCTGGAAAATCAAACAGAT
AATCAAGATGTGAGCAGGGCTTGGGCCTCATTCATGCTAGTGAACA

hide sequence

RefSeq Acc Id:

XM_005316744 ⟹ XP_005316801

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	112,568,323 - 112,729,798 (+)	NCBI
SpeTri2.0	NW_004936471	30,416,179 - 30,577,874 (+)	NCBI

Sequence:

show sequence

GAAGGTCTTTGATATCTCCCTCCTCCTCCTTTTCTTTCTCCTTCCCGCAATGCTTCCCCGCCAG
CAGGTAGACAAGCAGAGGGATACAAATTTCGCGCGGGAGGTGTTGAGGTGGGCCCTAAAGAGCA
ACGGACCGGAAGTGGTGGTTGTCATAGCCACCGAAGTGTCCAGCCTTTCCCCATCTAATCCTCT
TCCCAGTACTCTCTCCGTTTTTACGAAGCCAAGGAAAACAGAACCAGGAAGTGCTGACGCACCG
GACCCCTACAAATACAACCAGATGTTATAACGACGGTTTCGGTCAGGCGATTTGGGAGGGGACC
AGACCGGAAATGGTAGTTTCTATGGTAACCCCTGAGCGGGTTGCCTGGGAGATGACCTCTTGTG
GTCTCTCTGAATCTCTGCTGTAGCGTCACCTAGAAGGCAGATCTAACATCCTGAACTGTCTCCT
GCCATGATTCCCGGGAAATACCGCTCTGCTTCTGGCCGGACTGCAAACAACGTGAACTGTGGGC
TTCATCTGGTTATTCAAACATCATCGCTTCCTGAAAAAAACAAAGTTGAATTCAAGATTAATAG
AGAAACATCATCATTTCCTGGAAGACTCTTACAGCATGACCTTGAAAGAAACTACTCAAGTAGG
CAAGGTGATCATATTAATTTGGTGAGCTCATCAATGCCATCATTTCCTATTCTTCATCGTTCTT
CTGAAGAGAAAATTCTTTACTCAGACAGATTGACTCTAGAAAGGCAAAAGCTAACGGTTTGCCC
TATCATTGATGGAGAAGAACACCTTCGTTTGTTGAACTTTCAGCACAATTTTATAACTCGGATC
CAAAATATTTCAAATTTACAGAGGTTAATATTCTTGGATTTATATGATAACCAGATTGAAGAAA
TTAGTGGGCTTTCTACTTTAAGATCCCTCCGTGTCCTTCTCTTGGGGAAAAACAGAATCAAGAA
AATCTCAAATTTAGAGAATCTAAAAAGCCTAGATGTTTTGGACCTTCATGGAAATCAGATTACC
AGAATTGAAAATGTCAACCATTTGTGTGATTTGAGAGTTTTGAATCTTGCCAGGAACCTTTTGG
GTCAAGTTGATAATCTTAATGGACTGGATTCACTAACTGAACTTAACCTGCGACACAATCAAAT
CACTTCTGTGAGAGATGTGGATACTTTGCCCTGCCTCCAACGTCTGTTTCTCAGCTTCAATAAT
ATTTCTAGTTTTGACAGTGTTTCCTGTCTTGCTGACTCTACTTCCCTATCAGACATCACTTTTG
ATGGCAACCCAATAGCTCAAGAGTCATGGTACAAACACACTGTCCTTCAGAATATGATGCAGCT
ACGCCAGCTAGATATGAAGAGAATCACGGAAGAAGAAAGGCGTATGGCATCTGTAGTAGCCAAG
AAGGAGGAAGAGAAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAA
CAATTAACAACGTAGCTCGAAAGTGGGACTTGCAACAACGAGTGGCCAATAACGCTACAAACCC
AGATAGAAAAGATTCTGATTCTCCTCCTCAGGACCCTTGTCAAAGTGATGGAAGCACCATTTCT
GCATTTCCAGAAGAAACAGGGTCTCTAGACTCAGGACTCAACAATGCTTTATTAGGTTTATCTG
TCACAGACACATACCTTGTTGAAGTGGATGGGGATACACTTTCCCTGTATGGTTCAGGAGCACT
AGAATCTCTGGATCGAAATTGGAGTGTCCAAACAGCAGGAATGGTCACGACAGTCTCCTTCACA
TTCATAGAGTTTGACGAAATTGTCCAAGTGCTCCCCAAATTGAAGATGAAGTTTCCTAATTCTC
TGCACCTTAAATTTAAGGAAACAAATCTTATAATGCTGCAGCAATTTAATGCACTAGCCCAACT
TCGTCGTATTGACCAGTTGACAATTGATCCTCAAGGAAATCCAGTTGTCAATTTTACACTATGG
AAATACTATGTACTATTTAGGCTAAGCCATTTTAGTATGCAGAAAATAAATGGAACAGAGGTGA
CACAGAATGACATGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGA
GTTACCTCAATACCGTATGATTTCAATTCTGGGTGATGCCAGGAAAAAGCAATTCCGGTATCTA
TTAGAAACCAAAGGAAAAAAACCTGGCATTATCAGTGAAGAAAATAATGATAACAAAAGACTTG
TAGGAGAAAACACAAATCGTGCTACACTCAATTATACCACAAGAGAATTTTATCATGAAAAGCT
AGAGGAAATAAAGGAGAAAAAGAAATTCTGCAAAATGTATATAGAAGACCTTGTGAAGGAAGCC
ACAGAAATCAATATGAAAAATGAAGCTTTGCAGAAGCTTTGGCCGCAGATGTTCATTGAGCTTG
TTAGGGATGCAGTCATAGAAATCCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGAT
AACTGACCAAAAATAGAGAGGGCTTTTAGTAACCGTTGATTTTGGCAGTTTTACTTTTTTTAAA
AGGTTGAAAATATGCAGATTAAATATGTTAAAACAACATTATCCTACAAACTAGGAAGAGTAGC
ATCAAACGTTGTTGCCTGTTGTTCTCAAAGTGAAAGATTAAGAAGGAAAGCAGGAAGAAGGGAG
GATTCATTTCATATATGTGTTGACCAGATGCTTGGATGTTAGGTTGGCAATGCATCTTCCGTTC
TTGCTCTGATCAGAGCCCCCGCTATAGCCCAAAGCACATGGTATTTGCCGATGGGTCAGCATGA
GTTGCTTCTACCTACTTTCAGCTGATGGTTTTCATTTGTTTGCCTTTTTATTTTATGTCATGAT
TTCAAAGCCAAAAATATGTTCTTTTTTATGAGTGAAGAATAAACTTAATACATTAGTTAAAAAA
AATTTTTTTTGCCTCTTTA

hide sequence

RefSeq Acc Id:

XM_021727958 ⟹ XP_021583633

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	112,577,385 - 112,729,798 (+)	NCBI
SpeTri2.0	NW_004936471	30,425,530 - 30,578,311 (+)	NCBI

Sequence:

show sequence

GTCATAGTGCTGGCCCAAATGTATCTGGTAATGAGGGACTATCATCTCAGTTATTAGTGATCAT
ATTAATTTGGTGAGCTCATCAATGCCATCATTTCCTATTCTTCATCGTTCTTCTGAAGAGAAAA
TTCTTTACTCAGACAGATTGACTCTAGAAAGGCAAAAGCTAACGGTTTGCCCTATCATTGATGG
AGAAGAACACCTTCGTTTGTTGAACTTTCAGCACAATTTTATAACTCGGATCCAAAATATTTCA
AATTTACAGAGGTTAATATTCTTGGATTTATATGATAACCAGATTGAAGAAATTAGTGGGCTTT
CTACTTTAAGATCCCTCCGTGTCCTTCTCTTGGGGAAAAACAGAATCAAGAAAATCTCAAATTT
AGAGAATCTAAAAAGCCTAGATGTTTTGGACCTTCATGGAAATCAGATTACCAGAATTGAAAAT
GTCAACCATTTGTGTGATTTGAGAGTTTTGAATCTTGCCAGGAACCTTTTGGGTCAAGTTGATA
ATCTTAATGGACTGGATTCACTAACTGAACTTAACCTGCGACACAATCAAATCACTTCTGTGAG
AGATGTGGATACTTTGCCCTGCCTCCAACGTCTGTTTCTCAGCTTCAATAATATTTCTAGTTTT
GACAGTGTTTCCTGTCTTGCTGACTCTACTTCCCTATCAGACATCACTTTTGATGGCAACCCAA
TAGCTCAAGAGTCATGGTACAAACACACTGTCCTTCAGAATATGATGCAGCTACGCCAGCTAGA
TATGAAGAGAATCACGGAAGAAGAAAGGCGTATGGCATCTGTAGTAGCCAAGAAGGAGGAAGAG
AAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAACAATTAACAACG
TAGCTCGAAAGTGGGACTTGCAACAACGAGTGGCCAATAACGCTACAAACCCAGATAGAAAAGA
TTCTGATTCTCCTCCTCAGGACCCTTGTCAAAGTGATGGAAGCACCATTTCTGCATTTCCAGAA
GAAACAGGGTCTCTAGACTCAGGACTCAACAATGCTTTATTAGGTTTATCTGTCACAGACACAT
ACCTTGTTGAAGTGGATGGGGATACACTTTCCCTGTATGGTTCAGGAGCACTAGAATCTCTGGA
TCGAAATTGGAGTGTCCAAACAGCAGGAATGGTCACGACAGTCTCCTTCACATTCATAGAGTTT
GACGAAATTGTCCAAGTGCTCCCCAAATTGAAGATGAAGTTTCCTAATTCTCTGCACCTTAAAT
TTAAGGAAACAAATCTTATAATGCTGCAGCAATTTAATGCACTAGCCCAACTTCGTCGTATTGA
CCAGTTGACAATTGATCCTCAAGGAAATCCAGTTGTCAATTTTACACTATGGAAATACTATGTA
CTATTTAGGCTAAGCCATTTTAGTATGCAGAAAATAAATGGAACAGAGGTGACACAGAATGACA
TGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGAGTTACCTCAATA
CCGTATGATTTCAATTCTGGGTGATGCCAGGAAAAAGCAATTCCGGTATCTATTAGAAACCAAA
GGAAAAAAACCTGGCATTATCAGTGAAGAAAATAATGATAACAAAAGACTTGTAGGAGAAAACA
CAAATCGTGCTACACTCAATTATACCACAAGAGAATTTTATCATGAAAAGCTAGAGGAAATAAA
GGAGAAAAAGAAATTCTGCAAAATGTATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAAT
ATGAAAAATGAAGCTTTGCAGAAGCTTTGGCCGCAGATGTTCATTGAGCTTGTTAGGGATGCAG
TCATAGAAATCCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACTGACCAAAA
ATAGAGAGGGCTTTTAGTAACCGTTGATTTTGGCAGTTTTACTTTTTTTAAAAGGTTGAAAATA
TGCAGATTAAATATGTTAAAACAACATTATCCTACAAACTAGGAAGAGTAGCATCAAACGTTGT
TGCCTGTTGTTCTCAAAGTGAAAGATTAAGAAGGAAAGCAGGAAGAAGGGAGGATTCATTTCAT
ATATGTGTTGACCAGATGCTTGGATGTTAGGTTGGCAATGCATCTTCCGTTCTTGCTCTGATCA
GAGCCCCCGCTATAGCCCAAAGCACATGGTATTTGCCGATGGGTCAGCATGAGTTGCTTCTACC
TACTTTCAGCTGATGGTTTTCATTTGTTTGCCTTTTTATTTTATGTCATGATTTCAAAGCCAAA
AATATGTTCTTTTTTATGAGTGAAGAATAAACTTAATACATTAGTTAAAAAAAATTTTTTTTGC
CTCTTTAGTCCAGTCAGTATTGTCATATTTGATGTATTTTTATGTTCTGCTTTGTTGGGTAGGA
TCCCTGCTGTTCACCTACGTGGGAGGAGGCCCCGTTCTTCCAGGGATGTATTTTCAGGGCACAA
CAGGGAGACCTGGGAGTCCCTATGGGCAGAGAATATTAAAATAAGTTAATACTAGGATAGAAAG
AAGATGCTTGATCTTAAAAGGATCCTGAGTGAATGTAAAATGCAGTCACAAATCAGTAAGTCTG
CTTTGATGAGAGTTGGTTCCTTCTTATTGACTGCCATGAGGCTCCTTTTATAGGCATGTATGTG
TACCTGTATCTTAGAGGTAATAAGGATATAAGGGTGAAAGTTTCTAATTTTTAAAATTACGCTG
GAAAATCAAACAGATAATCAAGATGTGAGCAGGGCTTGGGCCTCATTCATGCTAGTGAAC

hide sequence

RefSeq Acc Id:

XM_040274134 ⟹ XP_040130068

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	112,625,545 - 112,729,798 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005316800	(Get FASTA)	NCBI Sequence Viewer
	XP_005316801	(Get FASTA)	NCBI Sequence Viewer
	XP_021583633	(Get FASTA)	NCBI Sequence Viewer
	XP_040130068	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000848.3
	ENSSTOP00000025834.1
GenBank Protein	KAG3262176	(Get FASTA)	NCBI Sequence Viewer
	KAG3262177	(Get FASTA)	NCBI Sequence Viewer
	KAG3262178	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005316801 ⟸ XM_005316744
- Peptide Label:	isoform X2
- UniProtKB:	A0A287CX49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPGKYRSASGRTANNVNCGLHLVIQTSSLPEKNKVEFKINRETSSFPGRLLQHDLERNYSSRQ GDHINLVSSSMPSFPILHRSSEEKILYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQ NISNLQRLIFLDLYDNQIEEISGLSTLRSLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITR IENVNHLCDLRVLNLARNLLGQVDNLNGLDSLTELNLRHNQITSVRDVDTLPCLQRLFLSFNNI SSFDSVSCLADSTSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVVAKK EEEKKRESHKQSLLKEKKRLTINNVARKWDLQQRVANNATNPDRKDSDSPPQDPCQSDGSTISA FPEETGSLDSGLNNALLGLSVTDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMVTTVSFTF IEFDEIVQVLPKLKMKFPNSLHLKFKETNLIMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWK YYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDARKKQFRYLL ETKGKKPGIISEENNDNKRLVGENTNRATLNYTTREFYHEKLEEIKEKKKFCKMYIEDLVKEAT EINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQITDQK hide sequence

RefSeq Acc Id:	XP_005316800 ⟸ XM_005316743
- Peptide Label:	isoform X1
- UniProtKB:	I3LXN0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIPGKYRSASGRTANNVNCGLHLVIQTSSLPEKNKVEFKINRETSSFPGRLLQHDLERNYSSRQ GDGRVISPSLRYKSSCISSTTNVTELCGLEMKTATTSLSAFGDSSIQTPSKSRIRQGCHSAGPN VSGDHINLVSSSMPSFPILHRSSEEKILYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITR IQNISNLQRLIFLDLYDNQIEEISGLSTLRSLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQI TRIENVNHLCDLRVLNLARNLLGQVDNLNGLDSLTELNLRHNQITSVRDVDTLPCLQRLFLSFN NISSFDSVSCLADSTSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVVA KKEEEKKRESHKQSLLKEKKRLTINNVARKWDLQQRVANNATNPDRKDSDSPPQDPCQSDGSTI SAFPEETGSLDSGLNNALLGLSVTDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMVTTVSF TFIEFDEIVQVLPKLKMKFPNSLHLKFKETNLIMLQQFNALAQLRRIDQLTIDPQGNPVVNFTL WKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDARKKQFRY LLETKGKKPGIISEENNDNKRLVGENTNRATLNYTTREFYHEKLEEIKEKKKFCKMYIEDLVKE ATEINMKNEALQKLWPQMFIELVRDAVIEIRNKNSYMKLCLQQITDQK hide sequence

RefSeq Acc Id:

XP_021583633 ⟸ XM_021727958

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPSFPILHRSSEEKILYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQNISNLQRLIF
LDLYDNQIEEISGLSTLRSLRVLLLGKNRIKKISNLENLKSLDVLDLHGNQITRIENVNHLCDL
RVLNLARNLLGQVDNLNGLDSLTELNLRHNQITSVRDVDTLPCLQRLFLSFNNISSFDSVSCLA
DSTSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRMASVVAKKEEEKKRESHK
QSLLKEKKRLTINNVARKWDLQQRVANNATNPDRKDSDSPPQDPCQSDGSTISAFPEETGSLDS
GLNNALLGLSVTDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMVTTVSFTFIEFDEIVQVL
PKLKMKFPNSLHLKFKETNLIMLQQFNALAQLRRIDQLTIDPQGNPVVNFTLWKYYVLFRLSHF
SMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDARKKQFRYLLETKGKKPGII
SEENNDNKRLVGENTNRATLNYTTREFYHEKLEEIKEKKKFCKMYIEDLVKEATEINMKNEALQ
KLWPQMFIELVRDAVIEIRNKNSYMKLCLQQITDQK

hide sequence

RefSeq Acc Id:	XP_040130068 ⟸ XM_040274134
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSSTOP00000000848 ⟸ ENSSTOT00000000947

Ensembl Acc Id:

ENSSTOP00000025834 ⟸ ENSSTOT00000033215

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000941	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000947.3	UniProtKB/TrEMBL
	ENSSTOT00000033215.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cilia_flagella_integrity	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_4	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Lrrc49	ENTREZGENE
PANTHER	CENTROSOMAL PROTEIN 97KDA, ISOFORM B-RELATED	UniProtKB/TrEMBL
	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED	UniProtKB/TrEMBL
Pfam	LRR_4	UniProtKB/TrEMBL
	LRR_9	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_SD22	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A287CX49	ENTREZGENE, UniProtKB/TrEMBL
	I3LXN0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar