LOC101956014 (histone H2A type 1-H-like) - Rat Genome Database

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Gene: LOC101956014 (histone H2A type 1-H-like) Ictidomys tridecemlineatus
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Symbol: LOC101956014
Name: histone H2A type 1-H-like
RGD ID: 12500236
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946486,542 - 486,952 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366713,134,611 - 3,135,011 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013363668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013363668   ⟹   XP_013219122
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946486,542 - 486,952 (+)NCBI
SpeTri2.0NW_0049366713,134,611 - 3,135,011 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013219122 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020318.2
GenBank Protein KAG3288509 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013219122   ⟸   XM_013363668
- UniProtKB: I3N7H2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000031850 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029206.2 UniProtKB/TrEMBL
Gene3D-CATH Histone, subunit A UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
NCBI Gene LOC101956014 ENTREZGENE
PANTHER HISTONE H2A UniProtKB/TrEMBL
  HISTONE H2A.J UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt I3N7H2 ENTREZGENE, UniProtKB/TrEMBL