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Gene: Sertm2 (serine rich and transmembrane domain containing 2) Ictidomys tridecemlineatus

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Symbol:

Sertm2

Name:

serine rich and transmembrane domain containing 2

RGD ID:

124891684

Description:

ASSOCIATED WITH autistic disorder (ortholog); schizophrenia (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

serine-rich and transmembrane domain-containing 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	83,889,612 - 83,903,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	3,757,376 - 3,757,648 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Sertm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	83,889,612 - 83,903,931 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	3,757,376 - 3,757,648 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl

SERTM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	111,511,645 - 111,522,399 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	111,511,645 - 111,522,399 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	110,754,873 - 110,765,627 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	X	111,234,485 - 111,245,222 (+)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	100,376,380 - 100,386,731 (+)	NCBI		HuRef
CHM1_1	X	110,666,309 - 110,677,046 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	109,959,866 - 109,970,620 (+)	NCBI		T2T-CHM13v2.0

Sertm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	142,936,691 - 142,949,270 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	142,936,691 - 142,949,270 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	144,153,695 - 144,166,274 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	144,153,695 - 144,166,274 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	140,588,238 - 140,600,817 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	138,818,021 - 138,830,588 (+)	NCBI		MGSCv36	mm8
Celera	X	128,115,200 - 128,125,947 (+)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	65.23	NCBI

Sertm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	112,524,451 - 112,536,474 (+)	NCBI		GRCr8
mRatBN7.2	X	107,727,772 - 107,739,795 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	107,727,813 - 107,740,264 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	109,860,644 - 109,872,690 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	113,360,358 - 113,372,406 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	110,923,348 - 110,935,371 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	115,400,750 - 115,412,773 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	113,856,091 - 113,868,115 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	107,116,170 - 107,128,184 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

SERTM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	111,003,639 - 111,014,408 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	111,007,246 - 111,018,015 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	100,628,723 - 100,639,494 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	111,087,605 - 111,098,361 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	111,094,817 - 111,095,086 (+)	Ensembl	panpan1.1		panPan2

SERTM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	84,623,362 - 84,639,933 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	84,636,196 - 84,636,465 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	70,723,872 - 70,737,426 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	86,284,710 - 86,298,545 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	86,297,686 - 86,297,955 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	83,767,435 - 83,780,990 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	85,445,053 - 85,458,580 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	85,274,458 - 85,288,029 (+)	NCBI		UU_Cfam_GSD_1.0

SERTM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	91,537,899 - 91,548,871 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	91,534,775 - 91,549,167 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	105,952,601 - 105,963,000 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERTM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	99,318,514 - 99,329,882 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	24,559,237 - 24,570,001 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_040284413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000035800 ⟹ ENSSTOP00000027236

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936499	3,757,376 - 3,757,648 (-)	Ensembl

RefSeq Acc Id:

XM_040284413 ⟹ XP_040140347

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	83,889,612 - 83,903,931 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_040140347	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000027236.1
GenBank Protein	KAG3272747	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_040140347 ⟸ XM_040284413
- UniProtKB:	A0A287D0X8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000027236 ⟸ ENSSTOT00000035800

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000033966	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000035800.1	UniProtKB/TrEMBL
InterPro	SERTM	UniProtKB/TrEMBL
NCBI Gene	Sertm2	ENTREZGENE
PANTHER	PTHR35660	UniProtKB/TrEMBL
	SERINE-RICH AND TRANSMEMBRANE DOMAIN-CONTAINING 2	UniProtKB/TrEMBL
Pfam	SRTM1	UniProtKB/TrEMBL
UniProt	A0A287D0X8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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