LOC101974051 (olfactory receptor 6P1)

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Gene: LOC101974051 (olfactory receptor 6P1) Ictidomys tridecemlineatus

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Symbol:

LOC101974051 (Ensembl: OR6P1)

Name:

olfactory receptor 6P1 (Ensembl:olfactory receptor family 6 subfamily P member 1)

RGD ID:

12461856

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	4,956,527 - 4,957,480 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	1,797,030 - 1,797,983 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	1,797,030 - 1,797,983 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC101974051
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	4,956,527 - 4,957,480 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936740	1,797,030 - 1,797,983 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936740	1,797,030 - 1,797,983 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OR6P1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	158,560,606 - 158,570,580 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	158,560,606 - 158,570,580 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	158,530,396 - 158,540,370 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	156,799,068 - 156,800,018 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	131,603,484 - 131,604,437 (-)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	129,890,211 - 129,891,164 (-)	NCBI		HuRef
CHM1_1	1	159,928,793 - 159,929,746 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	157,697,705 - 157,707,679 (-)	NCBI		T2T-CHM13v2.0

Or6p1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	174,257,996 - 174,258,950 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	174,251,630 - 174,262,313 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	174,430,430 - 174,431,384 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	174,424,064 - 174,434,747 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	176,360,561 - 176,361,515 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	176,267,105 - 176,268,058 (+)	NCBI		MGSCv36	mm8
Celera	1	181,507,681 - 181,508,635 (+)	NCBI		Celera
Cytogenetic Map	1	H3	NCBI
cM Map	1	81.01	NCBI

Or6p1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	88,884,218 - 88,885,171 (+)	NCBI		GRCr8
mRatBN7.2	13	86,351,893 - 86,352,846 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	86,345,375 - 86,358,126 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	88,853,241 - 88,854,194 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	90,253,509 - 90,254,462 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	87,438,250 - 87,439,203 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	92,412,612 - 92,413,565 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	92,412,612 - 92,413,565 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	13	92,465,894 - 92,466,847 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	96,932,848 - 96,933,801 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	90,101,114 - 90,102,067 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	90,289,997 - 90,290,951 (+)	NCBI
Celera	13	85,954,745 - 85,955,698 (+)	NCBI		Celera
Cytogenetic Map	13	q24	NCBI

LOC102026963
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	10,413,443 - 10,414,396 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	10,413,443 - 10,414,396 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100982553
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	91,276,954 - 91,287,101 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	91,020,464 - 91,030,621 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	133,921,708 - 133,922,661 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	137,712,400 - 137,713,353 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	137,712,400 - 137,713,353 (-)	Ensembl	panpan1.1		panPan2

OR6P1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	23,158,144 - 23,159,100 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	23,158,144 - 23,159,100 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	23,180,677 - 23,181,633 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	23,290,276 - 23,291,232 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	23,290,276 - 23,291,232 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	23,052,693 - 23,053,649 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	23,587,732 - 23,588,688 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	24,019,212 - 24,020,168 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100625691
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	91,698,824 - 91,699,777 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	91,698,824 - 91,699,868 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	99,733,736 - 99,734,689 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103223782
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	5,361,510 - 5,364,601 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	4,530,852 - 4,531,805 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101705456
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	2,613,187 - 2,614,140 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624794	2,613,187 - 2,614,140 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000004863 ⟹ ENSSTOP00000022648

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936740	1,797,030 - 1,797,983 (+)	Ensembl

RefSeq Acc Id:

XM_005339402 ⟹ XP_005339459

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	4,956,527 - 4,957,480 (-)	NCBI
SpeTri2.0	NW_004936740	1,797,030 - 1,797,983 (+)	NCBI

Sequence:

show sequence

ATGGGGAATTTGAGTGGAGGCCACGTGGAAGAGTTTGTCTTGGTGGGCTTCCCCACATCTCCAC
CCCTCCAGCTGCTCCTGTTTGTCTTCTTTTTGGCCATTTACCTGTTGACGCTGCTGGAGAACGT
GCTCATCATCTCCACCATCCGGCTCACCGCGAGCCTTCATCGCCCCATGTACTTCTTTCTTGGT
CACCTCTCCTTCCTGGAGCTATGGTACATCAACGTTACCATTCCCCGGCTCTTGGGAGCCTTTC
TTACCCAGGATGGAAGAGTCTCCTACGTGGGTTGCATGACTCAGCTCTACTTCTTCATTGCTCT
GGCCTGCACAGAGTGTGTCCTGCTGGCCTTCATGGCCTATGACCGCTACCTGGCCATCTGTGAT
CCCCTCCGCTACCCGAGTCTCATGCCTTCCAGCTTGGCCACGCGTCTGGCGGCTGCCTCTTGGG
GGAGTGGGTTTCTCAGCTCCATGATGAAGCTGCTGTTCATTTCCCGACTGTACTACTGTGGACC
CAACGTCATCAACCACTTTTTCTGTGATATCTCCCCACTGCTGAACCTCACCTGCTCTGACAAG
GAGCAAGCAGAGCTGGTGGACTTCTTGCTGGCTCTGGTGATGATTCTGCTCCCTCTGGTGGCTG
TGATTTCATCCTATGCGGCCATCATCGCGGCGGTCCTGAGAATCCCAACTACCCAGGGACGTCA
CAGGGCTTTCTCCACTTGCACCTCTCACCTGGCAGTGGTCGTCATCTACTATTCCTCCACTCTC
TTCACCTACGCACGGCCCCGAGCCATGTACACCTTCAACTACAACAAAGTCATTTCCGTGCTCT
ACACTGTCATCGTCCCATTTCTCAACCCAGCCATCTACTGCCTGAGGAACAAGGAGGTGAAGGA
GGCCTTCCAAAAATCAGTCCTGGGCAGATGTCACCATCCGAGGGATGCTCCAGACTGA

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Protein Sequences


Protein RefSeqs	XP_005339459	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022648.1
GenBank Protein	KAG3281005	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005339459 ⟸ XM_005339402

- UniProtKB:

I3NE51 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGNLSGGHVEEFVLVGFPTSPPLQLLLFVFFLAIYLLTLLENVLIISTIRLTASLHRPMYFFLG
HLSFLELWYINVTIPRLLGAFLTQDGRVSYVGCMTQLYFFIALACTECVLLAFMAYDRYLAICD
PLRYPSLMPSSLATRLAAASWGSGFLSSMMKLLFISRLYYCGPNVINHFFCDISPLLNLTCSDK
EQAELVDFLLALVMILLPLVAVISSYAAIIAAVLRIPTTQGRHRAFSTCTSHLAVVVIYYSSTL
FTYARPRAMYTFNYNKVISVLYTVIVPFLNPAIYCLRNKEVKEAFQKSVLGRCHHPRDAPD

hide sequence

Ensembl Acc Id:

ENSSTOP00000022648 ⟸ ENSSTOT00000004863

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004879	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004863.3	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
	Olfactory_GPCR1	UniProtKB/TrEMBL
NCBI Gene	LOC101974051	ENTREZGENE
PANTHER	G-PROTEIN COUPLED RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	I3NE51	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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