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Gene: LOC100856762 (melanoma-associated antigen B16-like) Canis lupus familiaris

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Symbol:

LOC100856762

Name:

melanoma-associated antigen B16-like

RGD ID:

12348404

Description:

ASSOCIATED WITH autistic disorder (ortholog); McLeod syndrome (ortholog); Neurodevelopmental Disorders (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	30,061,692 - 30,064,909 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	35,054,771 - 35,057,992 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	30,105,002 - 30,108,222 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	30,161,233 - 30,164,453 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	30,150,856 - 30,154,076 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	30,261,197 - 30,264,417 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

McLeod syndrome (ISO)

Neurodevelopmental Disorders (ISO)

ornithine carbamoyltransferase deficiency (ISO)

retinitis pigmentosa 3 (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LOC100856762
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	30,061,692 - 30,064,909 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	35,054,771 - 35,057,992 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	30,105,002 - 30,108,222 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	30,161,233 - 30,164,453 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	30,150,856 - 30,154,076 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	30,261,197 - 30,264,417 (+)	NCBI		UU_Cfam_GSD_1.0

MAGEB16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	35,798,342 - 35,803,772 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	35,798,342 - 35,803,772 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	35,816,459 - 35,821,889 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	35,726,380 - 35,731,773 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	39,944,075 - 39,949,468 (+)	NCBI		Celera
Cytogenetic Map	X	p21.1	NCBI
HuRef	X	33,557,536 - 33,562,929 (+)	NCBI		HuRef
CHM1_1	X	35,847,558 - 35,852,951 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	35,394,326 - 35,399,316 (+)	NCBI		T2T-CHM13v2.0

Mageb16-ps1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	143,335,754 - 143,339,235 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	143,338,207 - 143,339,333 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	144,552,758 - 144,556,239 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	144,555,211 - 144,556,337 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	139,801,546 - 139,802,705 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	140,989,299 - 140,991,135 (-)	NCBI		MGSCv36	mm8
Celera	X	128,510,174 - 128,511,333 (-)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	65.69	NCBI

Mageb16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	47,580,752 - 47,665,173 (-)	NCBI		GRCr8
mRatBN7.2	X	43,693,205 - 43,725,664 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	43,693,211 - 43,725,657 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	45,025,398 - 45,055,594 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	48,492,757 - 48,522,955 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	46,157,450 - 46,187,648 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	46,977,655 - 47,026,377 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	46,977,655 - 47,078,128 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	47,191,588 - 47,237,657 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	65,483,955 - 65,512,589 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	44,336,416 - 44,366,444 (-)	NCBI		Celera
Cytogenetic Map	X	q21	NCBI

Mageb16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955499	8,159,691 - 8,173,930 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAGEB16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	37,643,015 - 37,650,720 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	37,646,531 - 37,654,095 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	28,444,872 - 28,450,693 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	36,078,785 - 36,084,368 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	36,081,171 - 36,083,807 (+)	Ensembl	panpan1.1		panPan2

LOC100522230
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	31,573,305 - 31,574,593 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	34,994,834 - 34,997,801 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Mageb16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624762	19,674,668 - 19,720,676 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LOC100856762
24 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
5	5	2	21	21	14	5	6	5	5	27	17	11	14	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003640252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038448936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038523183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038586485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038651668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003640252 ⟹ XP_003640300

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	30,061,692 - 30,064,909 (+)	NCBI
Dog10K_Boxer_Tasha	X	35,054,771 - 35,057,992 (+)	NCBI

Sequence:

show sequence

CTCTTGCTGTCGGCCCAGGAGGACCCGGGCACGGCGGGAGCCGGGGAGGAGCAGACTGGGAGCA
GGAACGGAAGCAATATCCCGTAACTTCCGCTTTCGAAGTCTGATAAATGCCGGCATGGAAAGGC
GTGGCCTCTCTCAGCAGAAGAAATCCTACGACTGGTCGCCCGGCCGAGAGTCTGAGGGTACTCC
AGTCAACAGACGAAGAGTCCCAGCTTCTACCACAGTCAAGGAGGGGAGGCCAGTTCTGAGGAGG
GCTGCATCAAGTGAGCAGAGGGAGGAGTCCCAGACCCTGCCAGGAATCAAGGTTGTGGTCCTCT
GTCACCCACCCTCCTGCCCACATTCCTTCCCACTACCACCAAGAGAAGTGAGCATGTCTCAGGG
TCAGGAGATTCCATTCTGCACACAGGAACAATACTCTGCCCACAATGAAATCACAGCCATCTCA
CCAAGCAAACCAGATAAGGGCTCCAGCAGCCAAGAAAAGGAAGATAGTTCAGCTTCTTTATCAA
AGTCGGGCACCGAGAACTTGCCCGTAGACCCTCTAGATGAAAAGGTGACTTCGTTGGTGCAGTT
CTTACTGCATAAGTATCAAACGAAAGAGCCCATCACAAAGGCAGAGGTGCTTGATGTTGTTGTC
AAAGAGTGCAAGGATCACTTCCTTGAGATCCTCAGGAGAGCCTCTAAGCACATGGAGGTGGTCT
TTGGTGTTGATGTGAAGGAGGTGGACCCCACCAGACACACTTACGCCCTTGTCAACAAACTAGG
CCTCACTTATGATGCGAGACTCAGTGGTGAGGAGGGCATGCCCAAGACCAGCCTCCTGATAATT
GTCCTGGGTGTGATCTTCATGAAGGGCAATCGTGCCACTGAGGAGGAGATCTGGAAAGTGCTGA
ATATGATGGACTTGTATTCTGGGAGGAATCACTTCATTTTTGGGGAGCCCAGGAAGTTCATCAC
CAAAGATTTGGTGCAAGAAAGGTACCTGGAGTACCAGCAGGTGGCCAACAGTGATCCTCCATGC
TATGAGTTCCTGTGGGGACCCAGAGCCCATGCTGAAGCCAGCAAGATGAAATTGCTGGAGTTTT
TTACCGAGATCCATGAGTCTGACCCCCGGTGCTTCCCGTCCCAGTACGAGGAGGCTTTGAGAGA
TGAAGCAGAGAGAGCCCAAGCTAGACTTGCAGCCAGGGCCAGCACTAATGCCATGAGCAGAGCA
CATCCCAGGTCCAGATCCCTCAGCAGCTCCCACCCCTAGAGAAGTCGGAGACAGATTCTTCACT
TTGTCTTTACAATTAGCAGTCAACTTTCTAAGTAGTGGAGGGCTGGGGTGTGGCTGTAGGAAGC
ACGATGTATAACATCCCTGTGTCCCTCTTCTATGTGTTTAACACAGAGGTTTATCTTCTTTATG
GTGGTGGGGGAAGTTTGTTTTCAAATGTTGTTCCCTTTAATATACCATTTTATTAGCTTCCGAA
TCTAAATTCATGAATGGCACTGGTTATACATTTATTGCTATTTATGACATTTAAGAATACAAGT
TTAGTTTGTTTATAAAACGGACCATCTTATTTTGTTATCTGGAAAAAGTAAATGATATTCAAAT
AGGCGTTTCTTTGGAAGTATCAAAGAATTCAGCAGTAAAATAGTTGGGATCAACAACAACAAAA
ATCCCTTAAAGATGGTCAAAAGGTACCAAAAGATAGTTAATTTTTAGCCTCCCTTAGCCCTTTT
AATCTACCATTCTGTAAAATTAAGTAACATACATGTATTTGCTTAGATTAGTTAAAAATATATG
AGAAATAAATCTTAAT

hide sequence

RefSeq Acc Id:

XM_038448936 ⟹ XP_038304864

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	30,105,002 - 30,108,222 (+)	NCBI

RefSeq Acc Id:

XM_038523183 ⟹ XP_038379111

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	30,161,233 - 30,164,453 (+)	NCBI

RefSeq Acc Id:

XM_038586485 ⟹ XP_038442413

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	30,261,197 - 30,264,417 (+)	NCBI

RefSeq Acc Id:

XM_038651668 ⟹ XP_038507596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	30,150,856 - 30,154,076 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003640300	(Get FASTA)	NCBI Sequence Viewer
	XP_038304864	(Get FASTA)	NCBI Sequence Viewer
	XP_038379111	(Get FASTA)	NCBI Sequence Viewer
	XP_038442413	(Get FASTA)	NCBI Sequence Viewer
	XP_038507596	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000033853.2
	ENSCAFP00040024089.1
	ENSCAFP00845030226
	ENSCAFP00845030226.1

RefSeq Acc Id:

XP_003640300 ⟸ XM_003640252

- UniProtKB:

A0A8C0SMZ1 (UniProtKB/TrEMBL), A0A8I3PI12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERRGLSQQKKSYDWSPGRESEGTPVNRRRVPASTTVKEGRPVLRRAASSEQREESQTLPGIKV
VVLCHPPSCPHSFPLPPREVSMSQGQEIPFCTQEQYSAHNEITAISPSKPDKGSSSQEKEDSSA
SLSKSGTENLPVDPLDEKVTSLVQFLLHKYQTKEPITKAEVLDVVVKECKDHFLEILRRASKHM
EVVFGVDVKEVDPTRHTYALVNKLGLTYDARLSGEEGMPKTSLLIIVLGVIFMKGNRATEEEIW
KVLNMMDLYSGRNHFIFGEPRKFITKDLVQERYLEYQQVANSDPPCYEFLWGPRAHAEASKMKL
LEFFTEIHESDPRCFPSQYEEALRDEAERAQARLAARASTNAMSRAHPRSRSLSSSHP

hide sequence

RefSeq Acc Id:

XP_038379111 ⟸ XM_038523183

RefSeq Acc Id:

XP_038507596 ⟸ XM_038651668

RefSeq Acc Id:	XP_038304864 ⟸ XM_038448936
- UniProtKB:	A0A8C0SMZ1 (UniProtKB/TrEMBL), A0A8I3PI12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038442413 ⟸ XM_038586485
- UniProtKB:	A0A8C0SMZ1 (UniProtKB/TrEMBL), A0A8I3PI12 (UniProtKB/TrEMBL)

Protein Domains

MAGE

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013842	UniProtKB/TrEMBL
	ENSCAFG00040015060	UniProtKB/TrEMBL
	ENSCAFG00845021898	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000038172.4	UniProtKB/TrEMBL
	ENSCAFT00040027736.1	UniProtKB/TrEMBL
	ENSCAFT00845038610	ENTREZGENE
	ENSCAFT00845038610.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.1200	UniProtKB/TrEMBL
	1.10.10.1210	UniProtKB/TrEMBL
InterPro	MAGE	UniProtKB/TrEMBL
	MAGE_WH1	UniProtKB/TrEMBL
	MAGE_WH2	UniProtKB/TrEMBL
	MHD_dom	UniProtKB/TrEMBL
KEGG Report	cfa:100856762	UniProtKB/TrEMBL
NCBI Gene	LOC100856762	ENTREZGENE
PANTHER	MAGE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PTHR11736	UniProtKB/TrEMBL
Pfam	MAGE	UniProtKB/TrEMBL
PROSITE	MAGE	UniProtKB/TrEMBL
SMART	MAGE	UniProtKB/TrEMBL
UniProt	A0A8C0SMZ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PI12	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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