RANBP3L (RAN binding protein 3 like) - Rat Genome Database

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Gene: RANBP3L (RAN binding protein 3 like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: RANBP3L
Name: RAN binding protein 3 like
RGD ID: 12254274
Description: ENCODES a protein that exhibits SMAD binding (inferred); INVOLVED IN intracellular transport (inferred); mesenchymal cell differentiation involved in bone development (inferred); negative regulation of osteoblast differentiation (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ran-binding protein 3-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,248,714 - 72,292,590 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,248,760 - 72,292,193 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,858,196 - 71,904,994 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,756,380 - 72,800,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,756,402 - 72,801,270 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,501,842 - 72,545,649 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,625,164 - 72,669,225 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,158,837 - 73,202,646 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function
SMAD binding  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Variants

.
Variants in RANBP3L
625 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000029705   ⟹   ENSCAFP00000027608
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl472,248,760 - 72,292,193 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000046391   ⟹   ENSCAFP00000039058
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl472,248,760 - 72,292,193 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007682   ⟹   ENSCAFP00845006074
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl472,756,402 - 72,800,117 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845007688   ⟹   ENSCAFP00845006080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl472,756,406 - 72,801,270 (+)Ensembl
RefSeq Acc Id: XM_003434457   ⟹   XP_003434505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1472,248,714 - 72,292,590 (+)NCBI
Dog10K_Boxer_Tasha471,858,196 - 71,904,994 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038474183   ⟹   XP_038330111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1472,501,842 - 72,545,649 (+)NCBI
RefSeq Acc Id: XM_038474184   ⟹   XP_038330112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1472,512,097 - 72,545,649 (+)NCBI
RefSeq Acc Id: XM_038499906   ⟹   XP_038355834
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha471,868,652 - 71,904,994 (+)NCBI
RefSeq Acc Id: XM_038535307   ⟹   XP_038391235
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0473,158,837 - 73,202,646 (+)NCBI
RefSeq Acc Id: XM_038535308   ⟹   XP_038391236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0473,169,093 - 73,202,646 (+)NCBI
RefSeq Acc Id: XM_038599575   ⟹   XP_038455503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0472,625,164 - 72,669,225 (+)NCBI
RefSeq Acc Id: XM_038599576   ⟹   XP_038455504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0472,635,620 - 72,669,225 (+)NCBI
RefSeq Acc Id: XM_038663911   ⟹   XP_038519839
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0472,756,380 - 72,800,194 (+)NCBI
RefSeq Acc Id: XM_038663912   ⟹   XP_038519840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0472,766,637 - 72,800,194 (+)NCBI
RefSeq Acc Id: XP_003434505   ⟸   XM_003434457
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S0K2 (UniProtKB/TrEMBL),   A0A8I3RTE9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000027608   ⟸   ENSCAFT00000029705
Ensembl Acc Id: ENSCAFP00000039058   ⟸   ENSCAFT00000046391
RefSeq Acc Id: XP_038330111   ⟸   XM_038474183
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038330112   ⟸   XM_038474184
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038455503   ⟸   XM_038599575
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038455504   ⟸   XM_038599576
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038519839   ⟸   XM_038663911
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S0T9 (UniProtKB/TrEMBL),   A0A8C0S0K2 (UniProtKB/TrEMBL),   A0A8I3RTE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038519840   ⟸   XM_038663912
- Peptide Label: isoform X2
- UniProtKB: A0A8C0R284 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038355834   ⟸   XM_038499906
- Peptide Label: isoform X2
- UniProtKB: A0A8C0R284 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391235   ⟸   XM_038535307
- Peptide Label: isoform X1
- UniProtKB: A0A8C0S0K2 (UniProtKB/TrEMBL),   A0A8C0S0T9 (UniProtKB/TrEMBL),   A0A8I3RTE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038391236   ⟸   XM_038535308
- Peptide Label: isoform X2
- UniProtKB: A0A8C0R284 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845006080   ⟸   ENSCAFT00845007688
Ensembl Acc Id: ENSCAFP00845006074   ⟸   ENSCAFT00845007682
Protein Domains
RanBD1

Promoters
RGD ID:13683060
Promoter ID:EPDNEW_C1128
Type:single initiation site
Name:RANBP3L_2
Description:RAN binding protein 3 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C1129  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1472,248,742 - 72,248,802EPDNEW
RGD ID:13683063
Promoter ID:EPDNEW_C1129
Type:initiation region
Name:RANBP3L_1
Description:RAN binding protein 3 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C1128  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1472,297,434 - 72,297,494EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018711 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001628 UniProtKB/TrEMBL
  ENSCAFG00040008294 UniProtKB/TrEMBL
  ENSCAFG00845004270 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000046391.4 UniProtKB/TrEMBL
  ENSCAFT00030002921.1 UniProtKB/TrEMBL
  ENSCAFT00030002946.1 UniProtKB/TrEMBL
  ENSCAFT00040015538.1 UniProtKB/TrEMBL
  ENSCAFT00040015610.1 UniProtKB/TrEMBL
  ENSCAFT00845007682 ENTREZGENE
  ENSCAFT00845007682.1 UniProtKB/TrEMBL
  ENSCAFT00845007688.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
KEGG Report cfa:489227 UniProtKB/TrEMBL
NCBI Gene RANBP3L ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3-LIKE UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PROSITE RANBD1 UniProtKB/TrEMBL
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8C0R284 ENTREZGENE
  A0A8C0S0K2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S0T9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MRT6_CANLF UniProtKB/TrEMBL
  A0A8I3RTE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NQJ7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:111689 ENTREZGENE