CFAP36 (cilia and flagella associated protein 36) - Rat Genome Database

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Pathways
Gene: CFAP36 (cilia and flagella associated protein 36) Canis lupus familiaris
Analyze
Symbol: CFAP36
Name: cilia and flagella associated protein 36
RGD ID: 12179112
Description: ASSOCIATED WITH Breast Cancer, Familial (ortholog); colon adenocarcinoma (ortholog); esophageal cancer (ortholog); FOUND IN axoneme (inferred); ciliary base (inferred); ciliary transition zone (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCDC104; cilia- and flagella-associated protein 36; coiled-coil domain containing 104
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,373,995 - 56,403,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,373,996 - 56,403,120 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1056,330,418 - 56,359,565 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01057,377,932 - 57,407,087 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,377,950 - 57,409,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,079,732 - 57,108,861 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,358,901 - 57,388,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,649,755 - 57,678,902 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axoneme  (IBA,IEA)
ciliary base  (IBA,IEA)
ciliary transition zone  (IEA)
cilium  (IEA)
cytoplasm  (IEA)
motile cilium  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CFAP36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11056,373,995 - 56,403,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1056,373,996 - 56,403,120 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1056,330,418 - 56,359,565 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01057,377,932 - 57,407,087 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1057,377,950 - 57,409,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11057,079,732 - 57,108,861 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01057,358,901 - 57,388,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01057,649,755 - 57,678,902 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CFAP36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38255,519,718 - 55,545,079 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl255,519,559 - 55,545,501 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh37255,746,854 - 55,772,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36255,600,244 - 55,625,720 (+)NCBIBuild 36Build 36hg18NCBI36
Celera255,587,129 - 55,612,615 (+)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef255,481,985 - 55,507,473 (+)NCBIHuRef
CHM1_1255,677,331 - 55,702,834 (+)NCBICHM1_1
T2T-CHM13v2.0255,516,894 - 55,542,266 (+)NCBIT2T-CHM13v2.0
Cfap36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391129,168,912 - 29,197,317 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1129,165,912 - 29,197,443 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381129,218,918 - 29,247,317 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1129,221,532 - 29,247,409 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371129,121,536 - 29,147,272 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361129,121,536 - 29,147,272 (-)NCBIMGSCv36mm8
Celera1131,587,363 - 31,614,826 (-)NCBICelera
Cytogenetic Map11A3.3NCBI
cM Map1116.46NCBI
Cfap36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814107,166,932 - 107,192,531 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl14107,166,947 - 107,192,406 (-)EnsemblGRCr8
mRatBN7.214102,966,006 - 102,991,693 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14102,966,001 - 102,991,555 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx14107,300,956 - 107,326,368 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014108,537,722 - 108,563,096 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014105,010,140 - 105,035,514 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd14107,670,998 - 107,696,371 (-)NCBI
Lyon_Normotensive14106,304,173 - 106,329,581 (-)NCBI
Lyon_Hypertensive14107,850,288 - 107,875,696 (-)NCBI
F344_StmMcwi14106,672,784 - 106,698,190 (-)NCBI
Rnor_6.014113,618,954 - 113,644,874 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14113,618,964 - 113,644,779 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.014113,294,058 - 113,319,619 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414110,220,114 - 110,245,524 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera14101,851,515 - 101,876,871 (-)NCBICelera
RGSC_v3.114110,246,470 - 110,271,871 (-)NCBI
Cytogenetic Map14q22NCBI
Cfap36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542427,522,324 - 27,547,437 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495542427,522,324 - 27,547,437 (-)NCBIChiLan1.0ChiLan1.0
CFAP36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21270,781,642 - 70,807,158 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A70,785,593 - 70,811,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A55,675,944 - 55,701,411 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A56,815,462 - 56,840,695 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A56,815,462 - 56,840,695 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Cfap36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11276,703,483 - 76,734,388 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440629226,653,806 - 26,687,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364911,884,020 - 1,916,927 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364911,884,071 - 1,915,127 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl385,709,784 - 85,742,436 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1385,712,377 - 85,742,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2390,513,265 - 90,543,452 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11455,442,163 - 55,470,604 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366604560,334,247 - 60,360,723 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11451,360,320 - 51,386,815 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1451,360,391 - 51,386,854 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Cfap36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248336,009,569 - 6,034,550 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248336,010,926 - 6,034,560 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl486,047,860 - 86,071,808 (+)Ensembl
Cfap36
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11196,839,106 - 96,864,580 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in CFAP36
315 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000004544   ⟹   ENSCAFP00000004201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1056,373,996 - 56,403,120 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020787   ⟹   ENSCAFP00845016309
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1057,377,950 - 57,409,771 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845020824   ⟹   ENSCAFP00845016346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1057,377,950 - 57,403,772 (+)Ensembl
RefSeq Acc Id: XM_038489331   ⟹   XP_038345259
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11057,079,732 - 57,108,861 (+)NCBI
RefSeq Acc Id: XM_038551302   ⟹   XP_038407230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01057,649,755 - 57,678,902 (+)NCBI
RefSeq Acc Id: XM_038615235   ⟹   XP_038471163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01057,358,901 - 57,388,035 (+)NCBI
RefSeq Acc Id: XM_038680629   ⟹   XP_038536557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01057,377,932 - 57,407,087 (+)NCBI
RefSeq Acc Id: XM_531832   ⟹   XP_531832
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11056,373,995 - 56,403,121 (+)NCBI
Dog10K_Boxer_Tasha1056,330,418 - 56,359,565 (+)NCBI
Sequence:
RefSeq Acc Id: XP_531832   ⟸   XM_531832
- UniProtKB: A0A8C0LTZ8 (UniProtKB/TrEMBL),   A0A8I3NLU3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000004201   ⟸   ENSCAFT00000004544
RefSeq Acc Id: XP_038345259   ⟸   XM_038489331
RefSeq Acc Id: XP_038471163   ⟸   XM_038615235
RefSeq Acc Id: XP_038536557   ⟸   XM_038680629
- UniProtKB: A0A8C0LTZ8 (UniProtKB/TrEMBL),   A0A8I3NLU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038407230   ⟸   XM_038551302
- UniProtKB: A0A8C0LTZ8 (UniProtKB/TrEMBL),   A0A8I3NLU3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845016346   ⟸   ENSCAFT00845020824
Ensembl Acc Id: ENSCAFP00845016309   ⟸   ENSCAFT00845020787
Protein Domains
BART


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002838 Ensembl
  ENSCAFG00845011709 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845020787 ENTREZGENE
  ENSCAFT00845020787.1 UniProtKB/TrEMBL
  ENSCAFT00845020824.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1520.10 UniProtKB/TrEMBL
InterPro BART_dom UniProtKB/TrEMBL
  BART_sf UniProtKB/TrEMBL
  CFAP36 UniProtKB/TrEMBL
NCBI Gene CFAP36 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 36 UniProtKB/TrEMBL
  PTHR21532 UniProtKB/TrEMBL
Pfam ARL2_Bind_BART UniProtKB/TrEMBL
UniProt A0A8C0LTZ8 ENTREZGENE
  A0A8I3NLU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NVK4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39161 ENTREZGENE