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Gene: ASCL4 (achaete-scute family bHLH transcription factor 4) Pan paniscus

Analyze

Symbol:

ASCL4

Name:

achaete-scute family bHLH transcription factor 4

RGD ID:

12043989

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

achaete-scute complex homolog 4; achaete-scute homolog 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	115,825,186 - 115,835,323 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	115,821,599 - 115,831,720 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	105,344,528 - 105,346,779 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	108,743,237 - 108,743,756 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ASCL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	115,825,186 - 115,835,323 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	115,821,599 - 115,831,720 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	105,344,528 - 105,346,779 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	108,743,237 - 108,743,756 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

ASCL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	107,774,704 - 107,776,644 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	107,774,704 - 107,776,644 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	12	108,168,481 - 108,170,421 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	106,692,292 - 106,694,545 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	106,670,628 - 106,672,882	NCBI
Celera	12	107,833,712 - 107,835,971 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	105,228,648 - 105,230,907 (+)	NCBI		HuRef
CHM1_1	12	108,134,114 - 108,136,373 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	107,738,195 - 107,740,135 (+)	NCBI		T2T-CHM13v2.0

Ascl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	85,763,266 - 85,765,513 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	85,763,545 - 85,782,070 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	85,927,402 - 85,929,649 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	85,927,681 - 85,946,206 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	10	85,391,236 - 85,392,392 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	85,358,290 - 85,359,167 (+)	NCBI		MGSCv36	mm8
Celera	10	87,903,088 - 87,904,244 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.8	NCBI

Ascl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	19,828,710 - 19,830,952 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	19,828,710 - 19,830,952 (-)	Ensembl				GRCr8
mRatBN7.2	7	17,940,972 - 17,943,215 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	17,941,709 - 17,942,146 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	19,903,142 - 19,905,382 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,066,431 - 22,068,687 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	21,842,785 - 21,845,025 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	7	21,902,460 - 21,904,700 (-)	NCBI
Lyon_Normotensive	7	22,737,718 - 22,739,958 (-)	NCBI
Lyon_Hypertensive	7	22,873,725 - 22,875,965 (-)	NCBI
F344_StmMcwi	7	21,467,468 - 21,469,708 (-)	NCBI
Rnor_6.0	7	23,946,974 - 23,949,600 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	23,947,765 - 23,948,202 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	7	24,096,570 - 24,099,125 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	20,079,914 - 20,080,351 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	15,173,149 - 15,175,774 (-)	NCBI		Celera
RGSC_v3.1	7	20,093,984 - 20,094,989 (-)	NCBI
Cytogenetic Map	7	q13	NCBI

ASCL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	31,053,716 - 31,056,234 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	31,053,744 - 31,054,265 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	31,036,584 - 31,037,754 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	31,896,305 - 31,897,475 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	31,896,305 - 31,896,832 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	31,635,850 - 31,637,020 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	31,924,911 - 31,926,075 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	32,111,507 - 32,112,676 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ascl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	6	13,293,395 - 13,296,971 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404945	14,368,536 - 14,370,113 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	7,379,349 - 7,379,918 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	7,378,982 - 7,379,918 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ASCL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	12,623,691 - 12,624,209 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	5	12,623,691 - 12,625,193 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	12,409,905 - 12,412,454 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ASCL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	11	104,938,345 - 104,940,292 (+)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666037	142,077,344 - 142,080,344 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	11	102,993,754 - 103,038,173 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	102,994,906 - 102,995,424 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Ascl4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	162,681,110 - 162,682,501 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034935020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_034935020 ⟹ XP_034790911

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	10	115,825,186 - 115,835,323 (+)	NCBI
NHGRI_mPanPan1	12	115,821,599 - 115,831,720 (+)	NCBI
Mhudiblu_PPA_v0	12	105,344,528 - 105,346,779 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034790911	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00050043109

RefSeq Acc Id:

XP_034790911 ⟸ XM_034935020

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00050030563	ENTREZGENE
Ensembl Transcript	ENSPPAT00050065405	ENTREZGENE
NCBI Gene	ASCL4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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