ZFP62 (ZFP62 zinc finger protein) - Rat Genome Database

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Gene: ZFP62 (ZFP62 zinc finger protein) Pan paniscus
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Symbol: ZFP62
Name: ZFP62 zinc finger protein
RGD ID: 12042347
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 62 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24175,851,196 - 175,871,920 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,014,260 - 174,035,780 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,035,533 - 176,051,361 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,347,626 - 183,364,943 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,351,012 - 183,364,662 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZFP62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24175,851,196 - 175,871,920 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,014,260 - 174,035,780 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,035,533 - 176,051,361 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,347,626 - 183,364,943 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,351,012 - 183,364,662 (-)Ensemblpanpan1.1panPan2
ZFP62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385180,826,870 - 180,861,276 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5180,847,611 - 180,861,285 (-)EnsemblGRCh38hg38GRCh38
GRCh375180,274,611 - 180,288,276 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,207,217 - 180,220,877 (-)NCBINCBI36Build 36hg18NCBI36
Celera5175,898,535 - 175,912,206 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5174,999,659 - 175,013,332 (-)NCBIHuRef
CHM1_15179,707,004 - 179,720,685 (-)NCBICHM1_1
T2T-CHM13v2.05181,399,916 - 181,417,629 (-)NCBIT2T-CHM13v2.0
Zfp62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,093,556 - 49,109,643 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,094,119 - 49,109,643 (+)EnsemblGRCm39 Ensembl
GRCm381149,203,261 - 49,218,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,203,292 - 49,218,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv371149,017,002 - 49,032,318 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,046,923 - 49,062,239 (+)NCBIMGSCv36mm8
Celera1153,765,986 - 53,781,302 (+)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.23NCBI
Zfp62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81034,019,367 - 34,040,564 (+)NCBIGRCr8
mRatBN7.21033,522,618 - 33,539,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,500,323 - 33,542,013 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01034,477,108 - 34,493,941 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,489,940 - 34,493,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,253,741 - 34,270,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41034,674,947 - 34,705,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1032,902,261 - 32,919,084 (+)NCBICelera
Cytogenetic Map10q21NCBI
Zfp62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955530390,287 - 393,031 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955530379,499 - 394,098 (+)NCBIChiLan1.0ChiLan1.0
ZFP62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111175,150 - 197,979 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11175,148 - 198,094 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11233,008 - 255,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01180,859 - 158,266 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.111106,280 - 129,081 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011195,272 - 218,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011356,708 - 379,508 (-)NCBIUU_Cfam_GSD_1.0
Zfp62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213118,172,257 - 118,212,324 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936826419,776 - 422,529 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936826408,707 - 432,988 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,849,157 - 57,863,075 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,848,791 - 57,863,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22159,681,644 - 159,695,949 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12382,563,412 - 82,578,830 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2382,566,861 - 82,578,908 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607513,985,508 - 14,002,127 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003806736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008956795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008956815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014345198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063604727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000060697   ⟹   ENSPPAP00000037795
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5183,351,012 - 183,364,662 (-)Ensembl
RefSeq Acc Id: XM_003806736   ⟹   XP_003806784
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,700 (-)NCBI
NHGRI_mPanPan15174,020,181 - 174,035,780 (-)NCBI
Mhudiblu_PPA_v05176,037,312 - 176,051,087 (-)NCBI
PanPan1.15183,351,012 - 183,364,662 (-)NCBI
Sequence:
RefSeq Acc Id: XM_057302398   ⟹   XP_057158381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,851,196 - 175,871,700 (-)NCBI
NHGRI_mPanPan15174,014,260 - 174,035,730 (-)NCBI
RefSeq Acc Id: XM_057302399   ⟹   XP_057158382
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,700 (-)NCBI
NHGRI_mPanPan15174,020,181 - 174,035,728 (-)NCBI
RefSeq Acc Id: XM_063604719   ⟹   XP_063460789
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,476 (-)NCBI
RefSeq Acc Id: XM_063604720   ⟹   XP_063460790
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,476 (-)NCBI
RefSeq Acc Id: XM_063604721   ⟹   XP_063460791
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,676 (-)NCBI
RefSeq Acc Id: XM_063604722   ⟹   XP_063460792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,476 (-)NCBI
RefSeq Acc Id: XM_063604723   ⟹   XP_063460793
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,476 (-)NCBI
RefSeq Acc Id: XM_063604724   ⟹   XP_063460794
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,475 (-)NCBI
RefSeq Acc Id: XM_063604725   ⟹   XP_063460795
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,676 (-)NCBI
RefSeq Acc Id: XM_063604726   ⟹   XP_063460796
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,476 (-)NCBI
RefSeq Acc Id: XM_063604727   ⟹   XP_063460797
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24175,857,879 - 175,871,920 (-)NCBI
RefSeq Acc Id: XP_003806784   ⟸   XM_003806736
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C791 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000037795   ⟸   ENSPPAT00000060697
RefSeq Acc Id: XP_057158381   ⟸   XM_057302398
- Peptide Label: isoform X3
RefSeq Acc Id: XP_057158382   ⟸   XM_057302399
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063460797   ⟸   XM_063604727
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460795   ⟸   XM_063604725
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460791   ⟸   XM_063604721
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460796   ⟸   XM_063604726
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460789   ⟸   XM_063604719
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460790   ⟸   XM_063604720
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460792   ⟸   XM_063604722
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460793   ⟸   XM_063604723
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063460794   ⟸   XM_063604724
- Peptide Label: isoform X2
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041640 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060697.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:100994424 UniProtKB/TrEMBL
NCBI Gene ZFP62 ENTREZGENE
PANTHER AA987161 PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9C791 ENTREZGENE, UniProtKB/TrEMBL