DEFB116 (defensin beta 116) - Rat Genome Database

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Gene: DEFB116 (defensin beta 116) Pan paniscus
Analyze
Symbol: DEFB116
Name: defensin beta 116
RGD ID: 11902636
Description: INVOLVED IN defense response to bacterium (inferred); innate immune response (inferred); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-defensin 116
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,997,464 - 37,002,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12036,990,561 - 36,995,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,595,348 - 27,600,718 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12028,231,909 - 28,237,278 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2028,231,909 - 28,237,278 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
DEFB116
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,997,464 - 37,002,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12036,990,561 - 36,995,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02027,595,348 - 27,600,718 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12028,231,909 - 28,237,278 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2028,231,909 - 28,237,278 (-)Ensemblpanpan1.1panPan2
DEFB116
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,303,212 - 31,308,585 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,303,212 - 31,308,585 (-)EnsemblGRCh38hg38GRCh38
GRCh372029,891,015 - 29,896,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,354,676 - 29,360,049 (-)NCBINCBI36Build 36hg18NCBI36
Celera2026,647,281 - 26,652,654 (-)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2026,679,780 - 26,685,153 (-)NCBIHuRef
CHM1_12029,794,966 - 29,800,339 (-)NCBICHM1_1
T2T-CHM13v2.02033,027,357 - 33,032,730 (-)NCBIT2T-CHM13v2.0
Defb29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,380,634 - 152,381,961 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,380,634 - 152,382,018 (-)EnsemblGRCm39 Ensembl
GRCm382152,538,714 - 152,540,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,538,714 - 152,540,098 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,364,450 - 152,365,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,230,155 - 152,231,482 (-)NCBIMGSCv36mm8
Cytogenetic Map2H1NCBI
cM Map275.24NCBI
Defb29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,464,380 - 161,472,484 (-)NCBIGRCr8
mRatBN7.23141,004,098 - 141,009,379 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,004,098 - 141,005,557 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,909,366 - 144,914,668 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,493,208 - 153,498,510 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,233,225 - 151,238,493 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03148,008,820 - 148,014,101 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,008,851 - 148,010,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,353,772 - 154,359,053 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,860,674 - 142,865,955 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3139,754,949 - 139,760,230 (-)NCBICelera
Cytogenetic Map3q41NCBI
Defb116
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542229,569,787 - 29,613,939 (+)NCBIChiLan1.0ChiLan1.0
DEFB116
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,833,054 - 20,840,751 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,832,841 - 20,841,100 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,480,174 - 20,487,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,519,185 - 21,526,885 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,519,185 - 21,526,885 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,797,534 - 20,805,231 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,902,429 - 20,910,145 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,333,046 - 21,340,761 (-)NCBIUU_Cfam_GSD_1.0
Defb116
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,924,799 - 169,925,171 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648518,356,163 - 18,356,535 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEFB116
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,064,505 - 35,067,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,063,977 - 35,067,003 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,993,670 - 39,999,112 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DEFB116
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,734,438 - 35,741,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,735,264 - 35,740,566 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605091,222,108 - 91,222,519 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003833412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000034433   ⟹   ENSPPAP00000011772
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2028,231,909 - 28,237,278 (-)Ensembl
RefSeq Acc Id: XM_003833412   ⟹   XP_003833460
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22136,997,464 - 37,002,834 (-)NCBI
NHGRI_mPanPan12036,990,561 - 36,995,931 (-)NCBI
Mhudiblu_PPA_v02027,595,348 - 27,600,718 (-)NCBI
PanPan1.12028,231,909 - 28,237,278 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003833460 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011772.1
RefSeq Acc Id: XP_003833460   ⟸   XM_003833412
- UniProtKB: A0A2R9A385 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000011772   ⟸   ENSPPAT00000034433
Protein Domains
Beta-defensin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029087 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034433.1 UniProtKB/TrEMBL
InterPro Beta_defensin UniProtKB/TrEMBL
NCBI Gene DEFB116 ENTREZGENE
Pfam Defensin_beta_2 UniProtKB/TrEMBL
UniProt A0A2R9A385 ENTREZGENE, UniProtKB/TrEMBL