LOC100994041 (olfactory receptor 1N1) - Rat Genome Database

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Gene: LOC100994041 (olfactory receptor 1N1) Pan paniscus
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Symbol: LOC100994041 (Ensembl: OR1N1)
Name: olfactory receptor 1N1 (Ensembl:olfactory receptor family 1 subfamily N member 1)
RGD ID: 11902426
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,815,136 - 16,821,517 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,819,489 - 16,820,424 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,653,188 - 93,657,334 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19121,993,911 - 121,994,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,993,911 - 121,994,849 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100994041
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,815,136 - 16,821,517 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,819,489 - 16,820,424 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,653,188 - 93,657,334 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19121,993,911 - 121,994,846 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,993,911 - 121,994,849 (-)Ensemblpanpan1.1panPan2
OR1N1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,526,358 - 122,527,293 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,526,358 - 122,527,293 (-)EnsemblGRCh38hg38GRCh38
GRCh379125,288,637 - 125,289,572 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,328,458 - 124,329,393 (-)NCBINCBI36Build 36hg18NCBI36
Build 349122,368,190 - 122,369,126NCBI
Celera995,936,962 - 95,937,897 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef994,903,358 - 94,904,293 (-)NCBIHuRef
CHM1_19125,436,670 - 125,437,605 (-)NCBICHM1_1
T2T-CHM13v2.09134,723,805 - 134,724,740 (-)NCBIT2T-CHM13v2.0
Or1n1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,749,426 - 36,750,358 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,747,551 - 36,752,672 (-)EnsemblGRCm39 Ensembl
GRCm38236,859,414 - 36,860,346 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,857,539 - 36,862,660 (-)EnsemblGRCm38mm10GRCm38
MGSCv37236,714,934 - 36,715,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36236,681,423 - 36,682,355 (-)NCBIMGSCv36mm8
Celera236,553,994 - 36,554,926 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
Or1n1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8340,804,149 - 40,805,084 (-)NCBIGRCr8
mRatBN7.2320,413,262 - 20,414,197 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,413,262 - 20,414,203 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx323,481,210 - 23,482,145 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0332,066,112 - 32,067,047 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,291,083 - 30,292,018 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0320,882,324 - 20,883,259 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl320,882,324 - 20,883,265 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0326,123,987 - 26,124,922 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4316,377,916 - 16,378,851 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1316,274,287 - 16,275,223 (-)NCBI
Celera315,084,453 - 15,085,388 (-)NCBICelera
Cytogenetic Map3p11NCBI


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063594229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000043024   ⟹   ENSPPAP00000020234
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9121,993,911 - 121,994,849 (-)Ensembl
RefSeq Acc Id: XM_063594229   ⟹   XP_063450299
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21116,815,136 - 16,821,517 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063450299 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020234.1
Ensembl Acc Id: ENSPPAP00000020234   ⟸   ENSPPAT00000043024
RefSeq Acc Id: XP_063450299   ⟸   XM_063594229
- UniProtKB: A0A2R9AYU4 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033336 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043024.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100994041 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A2R9AYU4 ENTREZGENE, UniProtKB/TrEMBL