LOC100993784 (cystatin-SN) - Rat Genome Database

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Gene: LOC100993784 (cystatin-SN) Pan paniscus
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Symbol: LOC100993784
Name: cystatin-SN
RGD ID: 11877725
Description: ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (inferred); FOUND IN cytoplasm (inferred); extracellular space (inferred); vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CST1
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,628,631 - 24,633,442 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12024,625,464 - 24,630,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,697,072 - 23,700,596 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12024,050,222 - 24,053,610 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003829363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003829363   ⟹   XP_003829411
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22124,628,631 - 24,633,442 (-)NCBI
NHGRI_mPanPan12024,625,464 - 24,630,275 (-)NCBI
Mhudiblu_PPA_v02023,697,072 - 23,700,596 (-)NCBI
PanPan1.12024,050,222 - 24,053,610 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829411 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031184.1
  ENSPPAP00000031188.1
RefSeq Acc Id: XP_003829411   ⟸   XM_003829363
- UniProtKB: A0A2R9BP60 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Cystatin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038530 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054048.1 UniProtKB/TrEMBL
  ENSPPAT00000054052.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.10 UniProtKB/TrEMBL
InterPro Cystatin_dom UniProtKB/TrEMBL
  Cystatin_sf UniProtKB/TrEMBL
  Prot_inh_cystat_CS UniProtKB/TrEMBL
KEGG Report pps:100993784 UniProtKB/TrEMBL
NCBI Gene LOC100993784 ENTREZGENE
PANTHER CYSTATIN UniProtKB/TrEMBL
  CYSTATIN-S-RELATED UniProtKB/TrEMBL
  CYSTATIN-SN UniProtKB/TrEMBL
Pfam Cystatin UniProtKB/TrEMBL
PROSITE CYSTATIN UniProtKB/TrEMBL
SMART SM00043 UniProtKB/TrEMBL
Superfamily-SCOP SSF54403 UniProtKB/TrEMBL
UniProt A0A2R9BP60 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BRY8_PANPA UniProtKB/TrEMBL