PRCD (photoreceptor disc component) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PRCD (photoreceptor disc component) Pan paniscus
Analyze
Symbol: PRCD
Name: photoreceptor disc component
RGD ID: 11795618
Description: ENCODES a protein that exhibits opsin binding (inferred); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); retinitis pigmentosa (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: photoreceptor disk component PRCD; progressive rod-cone degeneration
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,580,506 - 92,597,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,405,167 - 97,425,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,486,096 - 70,501,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,179,664 - 76,193,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,179,664 - 76,193,493 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PRCD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,580,506 - 92,597,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,405,167 - 97,425,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,486,096 - 70,501,945 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11776,179,664 - 76,193,493 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,179,664 - 76,193,493 (+)Ensemblpanpan1.1panPan2
PRCD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,527,586 - 76,553,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,527,586 - 76,553,578 (+)EnsemblGRCh38hg38GRCh38
GRCh371774,523,668 - 74,541,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,047,767 - 72,052,047 (+)NCBINCBI36Build 36hg18NCBI36
Celera1771,116,007 - 71,133,795 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,951,301 - 69,969,029 (+)NCBIHuRef
CHM1_11774,588,615 - 74,606,417 (+)NCBICHM1_1
T2T-CHM13v2.01777,424,329 - 77,450,324 (+)NCBIT2T-CHM13v2.0
Prcd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,544,603 - 116,559,224 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,544,360 - 116,559,215 (+)EnsemblGRCm39 Ensembl
GRCm3811116,653,889 - 116,668,389 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,653,534 - 116,668,389 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711116,518,422 - 116,529,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,515,541 - 116,529,703 (+)NCBIMGSCv36mm8
Celera11128,428,427 - 128,439,557 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.46NCBI
Prcd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,386,025 - 102,406,485 (+)NCBIGRCr8
mRatBN7.210101,887,192 - 101,907,647 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.010105,630,686 - 105,642,427 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,630,810 - 105,631,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,293,260 - 105,305,323 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10100,460,897 - 100,473,213 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Prcd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555065,751,963 - 5,764,766 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555065,751,963 - 5,764,767 (-)NCBIChiLan1.0ChiLan1.0
PRCD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,179,757 - 4,190,658 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,185,466 - 4,188,777 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha94,866,859 - 4,870,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.094,855,717 - 4,868,644 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl94,861,452 - 4,864,763 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.194,886,683 - 4,889,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,006,588 - 5,009,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,087,716 - 5,091,027 (-)NCBIUU_Cfam_GSD_1.0
Prcd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056024,783,504 - 4,796,895 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,616,794 - 1,619,049 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,615,165 - 1,628,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRCD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,973,258 - 4,975,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,966,627 - 4,976,694 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,818,370 - 4,828,390 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRCD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,124,623 - 45,156,887 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,135,485 - 45,137,921 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607715,864,683 - 15,880,907 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prcd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,398,103 - 6,408,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,398,044 - 6,409,985 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000050190   ⟹   ENSPPAP00000027350
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1776,179,664 - 76,193,493 (+)Ensembl
RefSeq Acc Id: XM_034942950   ⟹   XP_034798841
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,583,092 - 92,597,422 (+)NCBI
NHGRI_mPanPan11797,408,486 - 97,412,337 (+)NCBI
Mhudiblu_PPA_v01770,486,816 - 70,501,945 (+)NCBI
RefSeq Acc Id: XM_063599423   ⟹   XP_063455493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,583,092 - 92,597,414 (+)NCBI
RefSeq Acc Id: XM_063599424   ⟹   XP_063455494
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,583,092 - 92,597,436 (+)NCBI
RefSeq Acc Id: XR_004667366
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,581,214 - 92,597,409 (+)NCBI
NHGRI_mPanPan11797,406,214 - 97,425,263 (+)NCBI
Mhudiblu_PPA_v01770,486,096 - 70,501,945 (+)NCBI
RefSeq Acc Id: XR_010110716
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,581,214 - 92,597,413 (+)NCBI
RefSeq Acc Id: XR_010110717
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,581,214 - 92,597,415 (+)NCBI
RefSeq Acc Id: XR_010110718
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,580,506 - 92,597,414 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034798841 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455493 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455494 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027350.1
RefSeq Acc Id: XP_034798841   ⟸   XM_034942950
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BL25 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000027350   ⟸   ENSPPAT00000050190
RefSeq Acc Id: XP_063455494   ⟸   XM_063599424
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BL25 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063455493   ⟸   XM_063599423
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050190.1 UniProtKB/TrEMBL
InterPro PRCD UniProtKB/TrEMBL
NCBI Gene PRCD ENTREZGENE
PANTHER PHOTORECEPTOR DISK COMPONENT PRCD UniProtKB/TrEMBL
  PTHR38501 UniProtKB/TrEMBL
Pfam Rod_cone_degen UniProtKB/TrEMBL
UniProt A0A2R9BL25 ENTREZGENE, UniProtKB/TrEMBL