ZNF182 (zinc finger protein 182) - Rat Genome Database

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Gene: ZNF182 (zinc finger protein 182) Pan paniscus
Analyze
Symbol: ZNF182 (Ensembl: ZNF630)
Name: zinc finger protein 182 (Ensembl:zinc finger protein 630)
RGD ID: 11780427
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,594,944 - 49,628,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,598,316 - 49,631,479 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,404,284 - 40,435,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,297,256 - 48,327,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,298,563 - 48,394,699 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF182
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,594,944 - 49,628,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,598,316 - 49,631,479 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,404,284 - 40,435,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,297,256 - 48,327,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX48,298,563 - 48,394,699 (-)Ensemblpanpan1.1panPan2
ZNF182
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X47,974,851 - 48,003,989 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX47,974,851 - 48,003,989 (-)EnsemblGRCh38hg38GRCh38
GRCh37X47,834,250 - 47,863,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,719,194 - 47,748,321 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX52,029,773 - 52,058,920 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,547,356 - 45,575,714 (-)NCBIHuRef
CHM1_1X47,865,391 - 47,894,538 (-)NCBICHM1_1
T2T-CHM13v2.0X47,385,028 - 47,414,166 (-)NCBIT2T-CHM13v2.0
Zfp182
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,892,423 - 20,928,357 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,895,178 - 20,928,555 (-)EnsemblGRCm39 Ensembl
GRCm38X21,026,184 - 21,062,113 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX21,028,939 - 21,062,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X20,603,310 - 20,639,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,185,898 - 20,218,962 (-)NCBIMGSCv36mm8
CeleraX19,160,338 - 19,196,114 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.55NCBI
Zfp182
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,480,991 - 3,555,009 (+)NCBIGRCr8
mRatBN7.2X927,439 - 1,001,474 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX899,439 - 1,000,954 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX955,573 - 1,029,581 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,431,265 - 4,505,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X751,810 - 825,834 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X908,536 - 1,000,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX984,798 - 999,834 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X916,198 - 995,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX1,484,228 - 1,570,793 (+)NCBICelera
Cytogenetic MapXq11NCBI
Znf182
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495551693,596 - 148,739 (+)NCBIChiLan1.0ChiLan1.0
ZNF182
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,557,362 - 41,584,417 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,558,053 - 41,652,020 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,935,152 - 15,962,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,694,792 - 41,736,751 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,694,858 - 41,721,825 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,682,063 - 41,723,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,670,133 - 41,712,078 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,763,646 - 41,805,642 (-)NCBIUU_Cfam_GSD_1.0
LOC101954588
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,092,406 - 34,101,983 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721289,508 - 323,119 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721288,584 - 342,402 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF182
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,444,230 - 42,473,285 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,444,227 - 42,473,308 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,051,652 - 47,080,724 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF182
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,138,483 - 45,185,295 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX45,139,806 - 45,152,280 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607610,403,825 - 10,435,567 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000049307   ⟹   ENSPPAP00000026474
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX48,298,563 - 48,385,227 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000049315   ⟹   ENSPPAP00000026482
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX48,298,563 - 48,326,998 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000049319   ⟹   ENSPPAP00000026486
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX48,298,563 - 48,310,962 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000049327   ⟹   ENSPPAP00000026494
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX48,381,568 - 48,394,699 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000049330   ⟹   ENSPPAP00000026496
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX48,381,858 - 48,385,174 (-)Ensembl
RefSeq Acc Id: XM_008964555   ⟹   XP_008962803
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,098 (-)NCBI
NHGRI_mPanPan1X49,598,339 - 49,631,286 (-)NCBI
Mhudiblu_PPA_v0X40,404,284 - 40,435,028 (-)NCBI
PanPan1.1X48,297,256 - 48,327,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034950198   ⟹   XP_034806089
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,097 (-)NCBI
NHGRI_mPanPan1X49,598,316 - 49,631,285 (-)NCBI
Mhudiblu_PPA_v0X40,404,284 - 40,435,359 (-)NCBI
RefSeq Acc Id: XM_055106684   ⟹   XP_054962659
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,099 (-)NCBI
NHGRI_mPanPan1X49,598,338 - 49,631,287 (-)NCBI
RefSeq Acc Id: XM_055106687   ⟹   XP_054962662
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,097 (-)NCBI
NHGRI_mPanPan1X49,598,339 - 49,631,285 (-)NCBI
RefSeq Acc Id: XM_055106688   ⟹   XP_054962663
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,097 (-)NCBI
NHGRI_mPanPan1X49,598,339 - 49,631,285 (-)NCBI
RefSeq Acc Id: XM_063601696   ⟹   XP_063457766
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,628,099 (-)NCBI
RefSeq Acc Id: XM_063601697   ⟹   XP_063457767
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,624,634 (-)NCBI
RefSeq Acc Id: XM_063601698   ⟹   XP_063457768
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X49,594,944 - 49,620,467 (-)NCBI
RefSeq Acc Id: XP_008962803   ⟸   XM_008964555
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_034806089   ⟸   XM_034950198
- Peptide Label: isoform X2
Ensembl Acc Id: ENSPPAP00000026474   ⟸   ENSPPAT00000049307
Ensembl Acc Id: ENSPPAP00000026486   ⟸   ENSPPAT00000049319
Ensembl Acc Id: ENSPPAP00000026482   ⟸   ENSPPAT00000049315
Ensembl Acc Id: ENSPPAP00000026494   ⟸   ENSPPAT00000049327
Ensembl Acc Id: ENSPPAP00000026496   ⟸   ENSPPAT00000049330
RefSeq Acc Id: XP_054962659   ⟸   XM_055106684
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054962662   ⟸   XM_055106687
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054962663   ⟸   XM_055106688
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063457766   ⟸   XM_063601696
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063457767   ⟸   XM_063601697
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063457768   ⟸   XM_063601698
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049307.1 UniProtKB/TrEMBL
  ENSPPAT00000049315.1 UniProtKB/TrEMBL
  ENSPPAT00000049319.1 UniProtKB/TrEMBL
  ENSPPAT00000049330.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro Ikaros_C2H2-ZF UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF182 ENTREZGENE
PANTHER IP01201P-RELATED UniProtKB/TrEMBL
  RUMBA ZINC FINGER PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 382 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 715 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9BA38_PANPA UniProtKB/TrEMBL
  A0A2R9BBJ3_PANPA UniProtKB/TrEMBL
  A0A2R9BDX5_PANPA UniProtKB/TrEMBL
  A0A2R9BDY1_PANPA UniProtKB/TrEMBL