LOC100971765 (olfactory receptor 8I2)

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Gene: LOC100971765 (olfactory receptor 8I2) Pan paniscus

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Symbol:

LOC100971765

Name:

olfactory receptor 8I2

RGD ID:

11762397

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	57,254,182 - 57,255,114 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	58,269,703 - 58,270,635 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	51,337,437 - 51,338,434 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

olfactory receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100971765
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	57,254,182 - 57,255,114 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	58,269,703 - 58,270,635 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	51,337,437 - 51,338,434 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

OR8I2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	56,093,308 - 56,094,240 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	56,093,308 - 56,094,240 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	55,860,784 - 55,861,716 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	55,617,360 - 55,618,292 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	55,617,359 - 55,618,292	NCBI
Celera	11	53,200,954 - 53,201,886 (+)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	52,189,781 - 52,190,713 (+)	NCBI		HuRef
CHM1_1	11	55,726,311 - 55,727,243 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	56,031,669 - 56,032,601 (+)	NCBI		T2T-CHM13v2.0

Or8i2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	86,851,954 - 86,852,886 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	86,851,047 - 86,857,424 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	87,021,610 - 87,022,542 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	87,020,703 - 87,027,080 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	86,861,767 - 86,862,699 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	86,822,449 - 86,823,381 (-)	NCBI		MGSCv36	mm8
Celera	2	88,612,537 - 88,613,469 (-)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.86	NCBI

Or8i2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	92,576,324 - 92,577,256 (-)	NCBI		GRCr8
mRatBN7.2	3	72,119,367 - 72,120,299 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	72,118,427 - 72,124,136 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	75,567,363 - 75,568,295 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	84,165,920 - 84,166,852 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	81,937,998 - 81,938,930 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	74,596,461 - 74,597,393 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	74,596,461 - 74,597,393 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	81,246,611 - 81,247,543 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	70,403,987 - 70,404,919 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	70,300,358 - 70,301,291 (-)	NCBI
Celera	3	71,434,022 - 71,434,954 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

LOC102013528
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	1,030,944 - 1,031,876 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955511	1,030,944 - 1,031,876 (+)	NCBI	ChiLan1.0	ChiLan1.0

OR8I2P
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	39,776,402 - 39,777,334 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	39,300,188 - 39,301,120 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	40,465,580 - 40,466,512 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	40,076,261 - 40,077,193 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	39,637,546 - 39,638,478 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	40,224,910 - 40,225,842 (-)	NCBI		UU_Cfam_GSD_1.0

LOC101976888
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	16,418,535 - 16,419,491 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937056	45,310 - 46,266 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937056	45,310 - 46,266 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100622779
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	2	158,924,406 - 158,925,338 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003811690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003811690 ⟹ XP_003811738

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	57,254,182 - 57,255,114 (+)	NCBI
NHGRI_mPanPan1	11	58,269,703 - 58,270,635 (+)	NCBI
Mhudiblu_PPA_v0	11	51,337,437 - 51,338,434 (+)	NCBI

Sequence:

show sequence

AAGTCAAAGGCCTCAGTTGATATAAATGGCTGGCAACAATTTCACTGAGGCTACTGTCTTCATC
CTCTCTGGATTTGCAAATCACCCTGAGTTACAAGTCAGTCTTTTCTTGATGTTTCTCTTCATTT
ATCTATTCACTGTTTTGGGAAACCTGGGACTGATCACGTTAATCAGAATGGATTCTCAGCTTCA
AACCCCTATGTACTTTTTCCTGAGCAATTTTGCATCTATTGACATATTTTATTCCTCTACTGTA
ACACCTAAGGCATTGGTGAATTTCCAATCCAATCGGAGATCCATCTCCTTTGTTGGCTGCTTTG
TTCAAATGTACTTTTTTGTTGGATTGGTGTGTTGTGAGTGTTTCCTTCTGGGATCAATGGCCTA
CGATCGCTACGTAGCAATCTGCAATCCCTTACTGTATTCAGCAGTCATGTCCCAAAAAGTGTCC
AACTGGCTGGGAATAATGCCATATGTGATAGGCTTCACAAGCTCGCTGATATCTGTCTGGGTGA
TAAGCAGTTTGGCGTTCTGTGATTCCAGCATCAATCATTTTTTTTGTGACACCACAGCTCTTTT
AGCACTCTCCTGTGTAGATACATTCGGCACAGAAATGGTGAGCTTTGTCTTAGCTGGATTCACT
CTTCTTAGCTCTGTCCTTATCATCACAGTCACTTATATCATCATCATCTCAGCCATCCTGAGGA
TCCAGTCAGCAGCAGGCAGGCAGAAGGCCTTCTCCACCTGTGCATCCCACCTCATGGCTGTAAC
TATCTTTTATGGGTCTCTGATTTTCACCTATTTGCAACCTGATAACACAACATCGCTGACCCAG
GCGCAGGTGGCATCTGTATTCTATACGATTGTCATTCCCATGCTGAATCCACTCATCTACAGTC
TGAGGAACAAAGATGTGAAAAATGCTCTTCTGAGAGTCATACATAGAAAACTTTTTCCATGACA
AATTTATGTATGTTACAATTAAAACAAAGGTGGATGGC

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Protein Sequences


Protein RefSeqs	XP_003811738	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000017889.1

RefSeq Acc Id:

XP_003811738 ⟸ XM_003811690

- UniProtKB:

A0A2R9ASP0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGNNFTEATVFILSGFANHPELQVSLFLMFLFIYLFTVLGNLGLITLIRMDSQLQTPMYFFLS
NFASIDIFYSSTVTPKALVNFQSNRRSISFVGCFVQMYFFVGLVCCECFLLGSMAYDRYVAICN
PLLYSAVMSQKVSNWLGIMPYVIGFTSSLISVWVISSLAFCDSSINHFFCDTTALLALSCVDTF
GTEMVSFVLAGFTLLSSVLIITVTYIIIISAILRIQSAAGRQKAFSTCASHLMAVTIFYGSLIF
TYLQPDNTTSLTQAQVASVFYTIVIPMLNPLIYSLRNKDVKNALLRVIHRKLFP

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Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000032066	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000040610.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
KEGG Report	pps:100971765	UniProtKB/TrEMBL
NCBI Gene	LOC100971765	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR 8I2	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R9ASP0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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