Advanced Search (OLGA)

Gene: PGBD4 (piggyBac transposable element derived 4) Pan paniscus

Analyze

Symbol:

PGBD4

Name:

piggyBac transposable element derived 4

RGD ID:

11692314

Description:

ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

piggyBac transposable element-derived protein 4

RGD Orthologs

Human

Chinchilla

Green Monkey

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	22,885,064 - 22,890,157 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	27,606,786 - 27,611,880 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	12,611,489 - 12,617,110 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	31,446,355 - 31,448,735 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

References

Genomics

Comparative Map Data

PGBD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	22,885,064 - 22,890,157 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	27,606,786 - 27,611,880 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	12,611,489 - 12,617,110 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	31,446,355 - 31,448,735 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

PGBD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	34,102,083 - 34,108,686 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	34,102,083 - 34,108,686 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	34,394,284 - 34,400,887 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	32,181,566 - 32,183,883 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	32,181,565 - 32,185,927	NCBI
Celera	15	11,196,786 - 11,206,578 (+)	NCBI		Celera
Cytogenetic Map	15	q14	NCBI
HuRef	15	11,257,869 - 11,260,186 (+)	NCBI		HuRef
CHM1_1	15	34,512,237 - 34,514,554 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	31,900,289 - 31,906,910 (+)	NCBI		T2T-CHM13v2.0

Pgbd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955496	1,861,479 - 1,869,071 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGBD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	48,802,210 - 48,804,513 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	48,802,223 - 48,803,980 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	92,101,131 - 92,103,440 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003804951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003804951 ⟹ XP_003804999

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	16	22,885,064 - 22,890,157 (+)	NCBI
NHGRI_mPanPan1	15	27,606,786 - 27,611,880 (+)	NCBI
Mhudiblu_PPA_v0	15	12,611,489 - 12,617,110 (+)	NCBI
PanPan1.1	15	31,446,355 - 31,448,735 (+)	NCBI

Sequence:

show sequence

GGAAGTAAGGCGGAAGTACTGCCTTTAGCTCCCGGCACTCTGGATTGGAAGACGGCGCACAGAG
CATGTGTCAAGTGCCTATGAAGCGGACTGCCCATGAAGTGAAAGTCAAGTGTGTGTTGCTGCGG
CAGCCACGGAGGCCAAGGACCTCACGGGAGTAAAAGATGACGAGACTGGCTTCGGGAGAAACAC
CATCCAGAAGAGACCTTTCAAAAAACTTCTAGAGACTCCCCAAGACGTATGAGATGAAAGGCTT
CTTCTGTCTGTGTGCGTTTAACCCCTTTCTCCTTAGCCCCGAGATTACGCGCTGCTGTGCCTGC
GACTGCAGCGTTTACGCCGAGATAACTCGTGGATTACAGTGCCAACCTTACTCCCAAAGTTTGC
CACGAAATATCTCGTTTCTGTTATTTTCGCATGGTTCTGGTATATTGACTTTTGAAACAAAAGA
CATCATTCTATTTATAGCATTCTGTTTTTAGTAGTGGTATTTCCATCTACAAAATATAGTAATT
CTCGATCGCTGAAATGTCAAATCCTAGAAAACGTAGCATTCCTATGCGTGATAGTAATACCGGT
CTCGAACAGTTGTTGGCTGAAGATTCATTTGATGAATCTGATTTTTCGGAAATAGATGATTCTG
ATAATTTTTCGGATAGTGCTTTAGAAGACGATAAGATCAGGCCTCTGTCCCATTTAGAATCTGA
TGGAAAGAGCTCTACATCAAGTGACTCAGGGCGCTCCATGAAATGGTCAGCTCGTGCTATGATT
CCACGTCAAAGGTATGACTTTACCGGCACACCTGGCAGAAAAGTCGATGTCAGTGATATCACTG
ACCCATTGCAGTATTTTGAACTGTTCTTTACTGAGGAATTAGTTTCAAAAATTACTAGAGAAAC
AAATGCCCAAGCTGCCTTGTTGGCTTCAAAGCCACCGGGTCCGAAAGGATTTTCGCGAATGGAT
AAATGGAAAGACACTGACAATGACGAGCTCAAAGTCTTTTTTGCAGTAATGTTACTGCAAGGTA
TTGTGCAGAAACCTGAGCTGGAGATGTTTTGGTCAACAAGGCCTCTTTTGGATACACCTTATCT
CAGGCAAATTATGACTGGTGAAAGATTTTTACTTTTGTTTCGGTGCCTGCATTTTGTCAACAAT
TCTTCTATATCTGCTGGTCAATCAAAGGCCCAGATTTCATTGCAGAAGATCAAACCTGTGTTCG
ACTTTCTTGTAAATAAATTCTCAACTGTATATACTCCAAACAGAAACATTGCAGTTGATGAATC
ACTGATGCTGTTCAAGGGGCCATTAGCTATGAAGCAGTACCTCCCGACAAAACGAGTACGATTT
GGTCTGAAGCTATATGTACTTTGTGAAAGTCAGTCTGGTTATGTGTGGAATGCGCTTGTTCACA
CAGGGCCTGGCATGAATTTGAAAGATTCAGCCGATGGCCTGAAATCATCACGCATTGTTCTTAC
CTTGGTCAATGACCTTCTTGGCCAAGGGTATTGTGTCTTCCTCGATAACTTTAATATATCTCCC
ATGCTTTTCAGAGAATTACATCAAAATAGGACTGATGCAGTTGGGACAGCTCGTTTGAACAGAA
AACAGATTCCAAATGATCTGAAAAAAAGGATTGCAAAGGGGACGACTGTAGCCAGATTCTGTGG
TGAACTTATGGCACTGAAATGGTGTGACGGCAAGGAGGTGACAATGTTGTCAACATTCCACAAT
GATACTGTGATTGAAGTAAACAATAGAAATGGAAAGAAAACTAAAAGGCCACGTGTCATTGTGG
ATTATAACGAGAATATGGGAGCAGTGGACTCGGCTGATCAAATGCTTACTTCTTATCCATCTGA
GCGCAAAAGACACAAGGTTTGGTATAAGAAATTCTTTCACCATCTTCTACACATTACAGTGCTG
AACTCCTACATCCTGTTCAAGAAGGATAATCCTGAGCACACGATGAGCCATATAAACTTCAGAC
TGGCATTGATTGAAAGAATGCTGGAAAAGCATCACAAGCCAGGGCAGCAACATCTTCGAGGTCG
TCCGTGCTCCGATGATGTCACACCTCTTCGTCTGTCTGGAAGACATTTCCCCAAGAGCATACCA
GCAACGTCCGGGAAACAGAATCCAACTGGTCGCTGCAAAATTTGCTGCTCCCAATACGACAAGG
ATGGCAAGAAGATCCGGAAAGAAACGCGCTATTTTTGTGCCGAATGTGATGTTCCGCTTTGTGT
TGTTCCGTGCTTTGAAATTTACCACACGAAAAAAATTATTAAATACCGAGCATCATACACATCT
GTTCCATTAGGATTAGAGACAAGTTCTGTTTAGAAATAACTCCAAGATTGGGAGGCCGACCTGG
GTGGATCACCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003804999	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_003804999 ⟸ XM_003804951

- Sequence:

show sequence

MSNPRKRSIPMRDSNTGLEQLLAEDSFDESDFSEIDDSDNFSDSALEDDKIRPLSHLESDGKSS
TSSDSGRSMKWSARAMIPRQRYDFTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQA
ALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIM
TGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLF
KGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGMNLKDSADGLKSSRIVLTLVND
LLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQIPNDLKKRIAKGTTVARFCGELMA
LKWCDGKEVTMLSTFHNDTVIEVNNRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRH
KVWYKKFFHHLLHITVLNSYILFKKDNPEHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSD
DVTPLRLSGRHFPKSIPATSGKQNPTGRCKICCSQYDKDGKKIRKETRYFCAECDVPLCVVPCF
EIYHTKKIIKYRASYTSVPLGLETSSV

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	PGBD4	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar