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Gene: LYPD4 (LY6/PLAUR domain containing 4) Pan paniscus

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Symbol:

LYPD4

Name:

LY6/PLAUR domain containing 4

RGD ID:

11668607

Description:

ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN plasma membrane (inferred); plasma membrane raft (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ly6/PLAUR domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,940,684 - 47,950,712 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,809,662 - 49,819,699 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,725,837 - 38,733,460 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,231,778 - 47,239,631 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,231,778 - 47,239,581 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Carpenter Syndrome 2 (ISO)

congenital hypoplastic anemia (ISO)

craniosynostosis 1 (ISO)

Diamond-Blackfan anemia (ISO)

maple syrup urine disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

plasma membrane (IEA)

plasma membrane raft (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LYPD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	47,940,684 - 47,950,712 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	49,809,662 - 49,819,699 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	38,725,837 - 38,733,460 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,231,778 - 47,239,631 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,231,778 - 47,239,581 (-)	Ensembl	panpan1.1		panPan2

LYPD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	41,835,075 - 41,844,871 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	41,837,074 - 41,844,697 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	42,341,148 - 42,348,746 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	47,032,990 - 47,040,348 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	39,140,840 - 39,148,195 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	38,772,539 - 38,779,881 (-)	NCBI		HuRef
CHM1_1	19	42,342,611 - 42,349,980 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	44,653,180 - 44,664,338 (-)	NCBI		T2T-CHM13v2.0

Lypd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,564,044 - 24,569,180 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,564,045 - 24,569,366 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	24,864,617 - 24,869,924 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	24,864,620 - 24,869,941 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	25,649,639 - 25,654,710 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,573,380 - 24,578,451 (-)	NCBI		MGSCv36	mm8
Celera	7	19,480,522 - 19,485,593 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.3	NCBI

Lypd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	89,588,368 - 89,594,287 (-)	NCBI		GRCr8
mRatBN7.2	1	80,460,487 - 80,466,105 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,460,487 - 80,466,011 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	85,853,017 - 85,858,541 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,403,857 - 94,409,377 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	87,608,777 - 87,614,301 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	81,728,552 - 81,734,286 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	81,728,552 - 81,733,957 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	9	16,825,845 - 16,828,349 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	82,985,823 - 82,991,165 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,155,930 - 80,161,479 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	74,909,437 - 74,914,676 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Lypd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	989,941 - 994,950 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	989,234 - 994,901 (+)	NCBI	ChiLan1.0	ChiLan1.0

LYPD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,439,900 - 112,445,935 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	112,443,993 - 112,445,932 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	111,876,220 - 111,882,254 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	113,063,836 - 113,069,875 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	113,067,933 - 113,069,872 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,617,197 - 112,623,235 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	112,253,145 - 112,259,186 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	113,179,832 - 113,185,869 (+)	NCBI		UU_Cfam_GSD_1.0

Lypd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	16,228,335 - 16,245,969 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936706	591,128 - 593,307 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LYPD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	50,010,558 - 50,023,574 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	50,010,272 - 50,023,571 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	46,063,827 - 46,076,899 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LYPD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	36,045,116 - 36,052,343 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	14,279,835 - 14,282,170 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lypd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	835,135 - 837,071 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	818,276 - 839,188 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003812444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008964838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055103715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000009549 ⟹ ENSPPAP00000001947

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	47,231,778 - 47,239,581 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000009596 ⟹ ENSPPAP00000001960

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	47,231,847 - 47,233,983 (-)	Ensembl

RefSeq Acc Id:

XM_003812444 ⟹ XP_003812492

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,400 - 47,950,279 (-)	NCBI
NHGRI_mPanPan1	19	49,810,366 - 49,819,266 (-)	NCBI
Mhudiblu_PPA_v0	19	38,725,837 - 38,733,460 (-)	NCBI
PanPan1.1	19	47,231,778 - 47,239,581 (-)	NCBI

Sequence:

show sequence

GGTCTGCGCACGGGTTGCCTCGTTTCTGGCCTTCCCTTGCCTTGTACCTCGACTTCACGCGTGG
CTTGTTTTTGCCGAGTGGAGGCCCGCGTTTTCTGTTATGTCTCTTCCGATGCCCCACAACTCCT
GAGCTACCCTTCTTTTATGCGTTCTCTCCCAGCGCTGTGATTACCGGGTTGCTTACCGGGCCCT
CCTTCCTCAGATTGCACCCCTTTCCTTGTGTCTCTTCTTGTCTTTGTGTCGGTTGTGATTTTCC
TAATCTCTGATTTTCCTTTTCCCTCGGACGCTCTCCCTCTTCGGACCCATTTTCTCCCATGCTT
CATGCCCTGATAGCCTGGCCCCTTCCCGGCTTCTTCGCTACCGGGGACGCCTCTAGTTTTTCTG
AATTTCCGGCTGGCTCCACCCTCCGCGTTCATCTTCCTCAAGAGTTCGCCCCTCTGGGGGCTCC
TCTGTGTAATCGTCGCCTTCTCTGGGTATCTCTGTGAACTCCGTCTCATGCCATCCCGCCATCT
TCTCTGCCTTGGCCCCTTTTCTCTGTGCAGCCAGCTCTGTGTCCTTTTCTTCTCCCCCTCTAAA
ATCGACTCCTCTTCTCCCTGAGAGCCCCACCTTTGTGCCCCACTCCTCATTTTCCTACGCCTCC
CTCTCTCTGCTGGTCCTCTGTCTCCCTGCAAGGTTCCATTCCATCAATTTGTTTGTCTTTTGTA
GGGGTGGCATCCCCTCTGACTACTGCTCCATTTCCTTTTTTTTTTTTTTTTTTTTTGCTTGAGG
ATTTCACTTCAATCTTTTCTGGTTGCGTCTCCACTTGTACTCAGCTTGTTAGGTCCAGGTCCAG
TTGTTCTGCATCTGAGGCTGGCGTGTGCTGTCTTCTCTGATTGGCCTAATCCCCCTCACCCCCG
TGAGATCTGTTGTCAGCCTTCGTTTCTCTTTCCTGTGTCCCAGCTTTTCTGCGGGTCTTGGCAC
CTTTCTTGGCCACAGATTTCTGGGTTACAGAGCATGTGTGTCTGAGGCATTGCAGGCAGAAAAG
GGTGGCCGACGTGACCTCTAGCTGGACTGCTGGGCAGGGGAGCTGTCCTAGATAAAATTGGAAA
GAAACAGTGACCCAGAGACAGGTGGACAAAGAATTCGGGGACTGACGGGAACTGAGCTTGGGAT
CCAGACTGAAACTGATTCCAGACTGACCTCTAGCACCCAGGACCCAGACACAGGGCCATGGGAC
CCCAGCATTTGAGACTTGTGCAGCTGTTCTGCCTTCTAGGGGCCATCTCCACTCTGCCTCGGGC
TGGAGCTCTTTTGTGCTATGAAGCAACAGCCTCAAGATTCAGAGCTGTTGCTTTCCATAACTGG
AAGTGGCTTCTGATGAGGAACATGGTGTGTAAGCTGCAAGAGGGCTGCGAGGAGACGCTAGTGT
TCATTGAGACAGGGACTGCAAGGGGAGTCGTGGGCTTTAAAGGCTGCAGCTCGTCTTCGTCTTA
CCCTGCGCAAATCTCCTACCTTGTTTCCCCACCCGGAGTGTCCATTGCCTCCTACAGTCGCGTC
TGCCGGTCTTATCTCTGCAACAACCTCACCAATTTGGAGCCTTTTGTGAAACTCAAGGCCAGCG
CTCCTAAGTCTATCACATCTGCGTCCCATAGCTGCCCGACCTGTGTGGGCGAGCACATGAAGGA
TTGCCTCCCAAATTTTGTCACCACTAATTCTTGCCCCTTGGCTGCTTCTACGTGTTACAGTTCC
ACCTTAAAATTTCAGGCAGGGTTTCTCAATACCACCTTCCTCCTCATGGGGTGTGCTCGTGAAC
ATAACCAGCTTTTAGCGGATTTTCATCATATTGGGAGCATCAAAGTGACTGAGGTCCTCAACAT
CTTAGAGAAGTCTCAGATTGTTGGTGCAGCATCCTCCAGGCAAGATCCTGCTTGGGGTGTCGTC
TTAGGCCTCCTGTTTGCCTTCAGGGACTGACCATCTAGCTGCACCCGACAAGCACCCAGACTCT
TTCACATAACAAATAAAATAGCAGAGTTCCCTTTC

hide sequence

RefSeq Acc Id:

XM_008964838 ⟹ XP_008963086

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,940,684 - 47,950,217 (-)	NCBI
NHGRI_mPanPan1	19	49,809,662 - 49,819,204 (-)	NCBI
Mhudiblu_PPA_v0	19	38,725,837 - 38,733,460 (-)	NCBI
PanPan1.1	19	47,231,778 - 47,239,631 (-)	NCBI

Sequence:

show sequence

CCCCCAGGAACGGCCCGCCTGGCCCCGCCCCTGGGGCGTTGACCAAGCCCGGTCTGCGCACGGG
TTGCCTCGTTTCTGGCCTTCCCTTGCCTTGTACCTCGACTTCACGCGTGGCTTGTTTTTGCCGA
GTGGAGGCCCGCGTTTTCTGTTATGTCTCTTCCGATGCCCCACAACTCCTGAGCTACCCTTCTT
TTATGCGTTCTCTCCCAGCGCTGTGATTACCGGGTTGCTTACCGGGCCCTCCTTCCTCAGATTG
CACCCCTTTCCTTGTGTCTCTTCTTGTCTTTGTGTCGGTTGTGATTTTCCTAATCTCTGATTTT
CCTTTTCCCTCGGACGCTCTCCCTCTTCGGACCCATTTTCTCCCATGCTTCATGCCCTGATAGC
CTGGCCCCTTCCCGGCTTCTTCGCTACCGGGGACGCCTCTAGTTTTTCTGAATTTCCGGCTGGC
TCCACCCTCCGCGTTCATCTTCCTCAAGAGTTCGCCCCTCTGGGGGCTCCTCTGTGTAATCGTC
GCCTTCTCTGGGTATCTCTGTGAACTCCGTCTCATGCCATCCCGCCATCTTCTCTGCCTTGGCC
CCTTTTCTCTGTGCAGCCAGCTCTGTGTCCTTTTCTTCTCCCCCTCTAAAATCGACTCCTCTTC
TCCCTGAGAGCCCCACCTTTGTGCCCCACTCCTCATTTTCCTACGCCTCCCTCTCTCTGCTGGT
CCTCTGTCTCCCTGCAAGGTTCCATTCCATCAATTTGTTTGTCTTTTGTAGGGGTGGCATCCCC
TCTGACTACTGCTCCATTTCCTTTTTTTTTTTTTTTTTTTTTGCTTGAGGATTTCACTTCAATC
TTTTCTGGTTGCGTCTCCACTTGTACTCAGCTTGTTAGGTCCAGGTCCAGTTGTTCTGCATCTG
AGGCTGGCGTGTGCTGTCTTCTCTGATTGGCCTAATCCCCCTCACCCCCGTGAGATCTGTTGTC
AGCCTTCGTTTCTCTTTCCTGTGTCCCAGCTTTTCTGCGGGTCTTGGCACCTTTCTTGGCCACA
GATTTCTGGGTTACAGAGCATGTGTGTCTGAGGCATTGCAGGCAGAAAAGGGTGGCCGACGTGA
CCTCTAGCTGGACTGCTGGGCAGGGGAGCTGTCCTAGATAAAATTGGAAAGAAACAGTGACCCA
GAGACAGGTGGACAAAGAATTCGGGGACTGACGGGAACTGAGCTTGGGATCCAGACTGAAACTG
ATTCCAGACTGACCTCTAGCACCCAGGACCCAGACACAGGGCCATGGGACCCCAGCATTTGAGA
CTTGTGCAGCTGTTCTGCCTTCTAGGGGCCATCTCCACTCTGCCTCGTATGTCCTGTGGGGCTG
GATGCTATAAGACCCAGAAAGGGGCTGGAGCTCTTTTGTGCTATGAAGCAACAGCCTCAAGATT
CAGAGCTGTTGCTTTCCATAACTGGAAGTGGCTTCTGATGAGGAACATGGTGTGTAAGCTGCAA
GAGGGCTGCGAGGAGACGCTAGTGTTCATTGAGACAGGGACTGCAAGGGGAGTCGTGGGCTTTA
AAGGCTGCAGCTCGTCTTCGTCTTACCCTGCGCAAATCTCCTACCTTGTTTCCCCACCCGGAGT
GTCCATTGCCTCCTACAGTCGCGTCTGCCGGTCTTATCTCTGCAACAACCTCACCAATTTGGAG
CCTTTTGTGAAACTCAAGGCCAGCGCTCCTAAGTCTATCACATCTGCGTCCCATAGCTGCCCGA
CCTGTGTGGGCGAGCACATGAAGGATTGCCTCCCAAATTTTGTCACCACTAATTCTTGCCCCTT
GGCTGCTTCTACGTGTTACAGTTCCACCTTAAAATTTCAGGCAGGGTTTCTCAATACCACCTTC
CTCCTCATGGGGTGTGCTCGTGAACATAACCAGCTTTTAGCGGATTTTCATCATATTGGGAGCA
TCAAAGTGACTGAGGTCCTCAACATCTTAGAGAAGTCTCAGATTGTTGGTGCAGCATCCTCCAG
GCAAGATCCTGCTTGGGGTGTCGTCTTAGGCCTCCTGTTTGCCTTCAGGGACTGACCATCTAGC
TGCACCCGACAAGCACCCAGACTCTTTCACATAACAAATAAAATAGCAGAGTTCCCTTTC

hide sequence

RefSeq Acc Id:

XM_055103710 ⟹ XP_054959685

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,399 - 47,950,182 (-)	NCBI
NHGRI_mPanPan1	19	49,810,362 - 49,819,169 (-)	NCBI

RefSeq Acc Id:

XM_055103711 ⟹ XP_054959686

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,399 - 47,950,182 (-)	NCBI
NHGRI_mPanPan1	19	49,810,362 - 49,819,169 (-)	NCBI

RefSeq Acc Id:

XM_055103712 ⟹ XP_054959687

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,399 - 47,950,190 (-)	NCBI
NHGRI_mPanPan1	19	49,810,362 - 49,819,177 (-)	NCBI

RefSeq Acc Id:

XM_055103713 ⟹ XP_054959688

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,400 - 47,950,206 (-)	NCBI
NHGRI_mPanPan1	19	49,810,366 - 49,819,193 (-)	NCBI

RefSeq Acc Id:

XM_055103714 ⟹ XP_054959689

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,400 - 47,950,217 (-)	NCBI
NHGRI_mPanPan1	19	49,810,366 - 49,819,204 (-)	NCBI

RefSeq Acc Id:

XM_055103715 ⟹ XP_054959690

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	47,941,400 - 47,950,712 (-)	NCBI
NHGRI_mPanPan1	19	49,810,366 - 49,819,699 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003812492	(Get FASTA)	NCBI Sequence Viewer
	XP_008963086	(Get FASTA)	NCBI Sequence Viewer
	XP_054959685	(Get FASTA)	NCBI Sequence Viewer
	XP_054959686	(Get FASTA)	NCBI Sequence Viewer
	XP_054959687	(Get FASTA)	NCBI Sequence Viewer
	XP_054959688	(Get FASTA)	NCBI Sequence Viewer
	XP_054959689	(Get FASTA)	NCBI Sequence Viewer
	XP_054959690	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000001947
	ENSPPAP00000001947.1
	ENSPPAP00000001960
	ENSPPAP00000001960.1

RefSeq Acc Id:	XP_008963086 ⟸ XM_008964838
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZAA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPQHLRLVQLFCLLGAISTLPRMSCGAGCYKTQKGAGALLCYEATASRFRAVAFHNWKWLLMR NMVCKLQEGCEETLVFIETGTARGVVGFKGCSSSSSYPAQISYLVSPPGVSIASYSRVCRSYLC NNLTNLEPFVKLKASAPKSITSASHSCPTCVGEHMKDCLPNFVTTNSCPLAASTCYSSTLKFQA GFLNTTFLLMGCAREHNQLLADFHHIGSIKVTEVLNILEKSQIVGAASSRQDPAWGVVLGLLFA FRD hide sequence

RefSeq Acc Id:	XP_003812492 ⟸ XM_003812444
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZAQ4 (UniProtKB/TrEMBL), A0A2R8ZAA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPQHLRLVQLFCLLGAISTLPRAGALLCYEATASRFRAVAFHNWKWLLMRNMVCKLQEGCEET LVFIETGTARGVVGFKGCSSSSSYPAQISYLVSPPGVSIASYSRVCRSYLCNNLTNLEPFVKLK ASAPKSITSASHSCPTCVGEHMKDCLPNFVTTNSCPLAASTCYSSTLKFQAGFLNTTFLLMGCA REHNQLLADFHHIGSIKVTEVLNILEKSQIVGAASSRQDPAWGVVLGLLFAFRD hide sequence

Ensembl Acc Id:

ENSPPAP00000001947 ⟸ ENSPPAT00000009549

Ensembl Acc Id:

ENSPPAP00000001960 ⟸ ENSPPAT00000009596

RefSeq Acc Id:	XP_054959687 ⟸ XM_055103712
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZAA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959686 ⟸ XM_055103711
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZAA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959685 ⟸ XM_055103710
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZAA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959690 ⟸ XM_055103715
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZAQ4 (UniProtKB/TrEMBL), A0A2R8ZAA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959689 ⟸ XM_055103714
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZAQ4 (UniProtKB/TrEMBL), A0A2R8ZAA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054959688 ⟸ XM_055103713
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZAQ4 (UniProtKB/TrEMBL), A0A2R8ZAA8 (UniProtKB/TrEMBL)

Protein Domains

UPAR/Ly6

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000008791	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000009549.1	UniProtKB/TrEMBL
	ENSPPAT00000009596.1	UniProtKB/TrEMBL
InterPro	Fert-Immune_med_protein	UniProtKB/TrEMBL
	LY6_UPA_recep-like	UniProtKB/TrEMBL
	Snake_toxin-like_sf	UniProtKB/TrEMBL
KEGG Report	pps:100974852	UniProtKB/TrEMBL
NCBI Gene	LYPD4	ENTREZGENE
PANTHER	CD177 ANTIGEN	UniProtKB/TrEMBL
	LY6/PLAUR DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	UPAR_LY6	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57302	UniProtKB/TrEMBL
UniProt	A0A2R8ZAA8	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZAQ4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar