Symbol: |
LINC01887 |
Name: |
long intergenic non-protein coding RNA 1887 |
RGD ID: |
11569695 |
HGNC Page |
HGNC:52706 |
Description: |
|
Type: |
ncrna (Ensembl: lncRNA)
|
RefSeq Status: |
VALIDATED |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 18 | 10,610,998 - 10,626,420 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 18 | 10,611,459 - 10,629,249 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 18 | 10,610,995 - 10,626,417 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 18 | p11.22 | NCBI | | | | | CHM1_1 | 18 | 10,610,196 - 10,630,214 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 18 | 10,773,128 - 10,788,545 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
JBrowse: |
View Region in Genome Browser (JBrowse)
|
Model |
|
.
Predicted Target Of
Count of predictions: | 436 | Count of miRNA genes: | 365 | Interacting mature miRNAs: | 390 | Transcripts: | ENST00000583691, ENST00000584734 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction |
|
alimentary part of gastrointestinal system
| | | | | | | | | | | | | | | | | |
106
|
248
|
357
|
154
|
953
|
241
|
393
|
154
|
1025
|
56
|
392
|
1405
|
1382
|
10
|
704
|
109
|
573
|
305
|
102
|
Ensembl Acc Id: |
ENST00000579413 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,627,646 - 10,628,846 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000583691 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,119 - 10,629,247 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000584734 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,304 - 10,629,249 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743532 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,629,247 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743533 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,629,237 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743534 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,629,221 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743535 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,629,216 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743536 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,629,213 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743537 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,119 - 10,629,213 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743538 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,629,247 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743539 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,484 - 10,629,246 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743540 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,236 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743541 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,629,219 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743542 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,629,213 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743543 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,216 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743544 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,629,212 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743545 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,216 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743546 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,213 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743547 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,213 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743548 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,629,166 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743549 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,627,376 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743550 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,117 - 10,626,644 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743551 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,479 - 10,626,670 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743552 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,475 - 10,626,643 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743553 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,611,459 - 10,618,937 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743554 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,117 - 10,619,021 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743555 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,618,960 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743556 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,612,114 - 10,618,954 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743557 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,627,223 - 10,629,247 (-) | Ensembl |
|
Ensembl Acc Id: |
ENST00000743558 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38.p14 Ensembl | 18 | 10,627,223 - 10,629,216 (-) | Ensembl |
|
RefSeq Acc Id: |
NR_146509 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
---|
GRCh38 | 18 | 10,610,998 - 10,626,420 (-) | NCBI | T2T-CHM13v2.0 | 18 | 10,773,128 - 10,788,545 (-) | NCBI |
|
Sequence: |
GAAAACTAAGTGGCTTCCCTTGAGGCAGCCCGAGGGCTCCACTGGACCCAGAACTCTGAGTTCTGATGCTGCCTATCATTTGCTTTTCCTCATGAGCTCCTGGACCACCTCATATCACCAGCACCCTC TACCCAAGGTCCTGGAGCCAACACTGGAGTAAAAGAGCACAAGAGAACTCCTTAGAGGTGGAAGGATACCCTCTGAGGTCAAATCATTGGGCTTGTGGCCATGAGACCACAGACTTTGCCTGGCTTCC AGTGACTGTCCGAGATGACCTGTGGAGTGCACCGCCTGTACTTGGACATCACTGTCTTTTCGGATCCATACCCGTCATCCTTGGAATTTCCCCTGCATCCAAACCTGTTCCTGATACAGGTGTGAGTA ATGAATAACCCTAAGGAATATCTTGGATGTCTTCACGGGGCTTATGACTTATTCTGAGGTTTACAAAATAGAGGCCCCCAGCTGAGCAAAGAGAGGGCTGCAGCGCCGAGGGAACAGCTGCCGGACTC ACCGGAGAGGCCTCCTGGAGCACGCCGGGACCCCCTCCACCCCCTGGCTTTGGCTGCATCAATGGCTAGTTTGCCTGAACTATATCTGAGCCACTGAGAGTATTTATTAAGCAGAGAATAATTTTGAG TTTCACTTTTATAACTTTTGTTTCAAAAGTTGTTTTGGATAATTTAATGAAATGACTGTAAACCAGAATTCCCCTTTTCATTATTTCTTTGTGTCAATATAAAAAGAGTTGATGATTTTAAAAGCCAG TGAGATGTCCCTGTCTGTGGATGTCAGCGGGAGGGTGGGGTCTGACGCCTTTCTCTGGTGGCTGTCCAGGAAGATTGCCCCAGCTTGCACTCCCTTTTGGCGGGTTCCAGAGCCTTCCATTTGAAAGG AGCATCTCTCACCACTCTGCCCCACCCAGCACCAGCTCTTCTGGAACCCACTGACTTCCTAAACACTTTCTTCCTCCTTCACCTCATTGAATTCAAGACTTTAGAAAACAGCCAAAAACTCTAGAGGT GGGGGTGGGTTCGATCTGGAAATCCCTGCTGTAATCTTTTTAAGGGAATCCACTGGAAATTATTAATTTATGTTTTAAATAAAACCATTCCTTACTTAACAGAATATTAAGCCACTCATTTTTTTAAC AGAACTTTCGAGATATAATTAAAATGCCATAAATTTCACCCCCACACAGTGTACAATTCCAAGGTTTCCAATATAGTCACAGAAGTCTCTGCAACAATTACCACAATTTTAGACATGAAGACCATTTG TTGGCAGCCCTACCTGCCTCTATGTGTATGTATATAATTTTAATATTGGATTGGATACTATAGTAATATTGTACTGTTACCTATTTGTGTTTTTATATTGCTGTTTTATTTTATTCAGATGAATAATA ATTATCTCCATATAGTCATACATTTATATAGGGTTAAACACACCTTTTTACAATTCAATAAATTAAATTGGTCAGGTATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGG ATCACCTGAGGTTGGGAGTTTGAGACCAGCGTGATCAACATGGAGAAACCCTGTCTGTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAG GCAGGAGAATCACTCGAACCAAGGAGGCGGACATTGCGGTGAGCCAGGATCGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAGAAGAAAAAAAAAAAAAAAGTAAATTGTT TTTAATTACATAAGAAACACGTGTTATTGTTATAGAAATTCACATAGTGCTTCGGTCTATAGAATAAATGTATCCCCACCACCTCCCAGCCCACCCACTCGTCTGCATTCACCTACACACAGTTAAAC ATGCACATATGTTTCCGTGACACGATCTTGCTTTGCATATTGTTCACTGACTGGCTTTTCCATATAAGATTTAATTTGGTGATTATTGCTTATCAGTACCTATAGGTCTCTCTCATTATTATTTATAA TTACATCATTATTCCATAGGGTATTTTACCACAATTTGGTCACTTTTTCACTGAGGAATTTTTATGTCAGTTTCAGTTATTTGTTATTGTTACCAATGCTGTACTGGGCATCCCTGTATATCCACCTT TTTGTTGCATTAGTTAAGTGGTTTTTTCCTTTTATGATTGATTTCTAAAAATAAAATACTGCAGCAAA
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