LINC01887 (long intergenic non-protein coding RNA 1887) - Rat Genome Database

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Gene: LINC01887 (long intergenic non-protein coding RNA 1887) Homo sapiens
Analyze
Symbol: LINC01887
Name: long intergenic non-protein coding RNA 1887
RGD ID: 11569695
HGNC Page HGNC:52706
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381810,610,998 - 10,626,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1810,611,459 - 10,629,249 (-)EnsemblGRCh38hg38GRCh38
GRCh371810,610,995 - 10,626,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18p11.22NCBI
CHM1_11810,610,196 - 10,630,214 (-)NCBICHM1_1
T2T-CHM13v2.01810,773,128 - 10,788,545 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 44 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 18p11.32-11.21(chr18:148963-14081888)x4 copy number gain See cases [RCV000135515] Chr18:148963..14081888 [GRCh38]
Chr18:148963..14081887 [GRCh37]
Chr18:138963..14071887 [NCBI36]
Chr18:18p11.32-11.21
pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:958974-11954935)x1 copy number loss See cases [RCV000142225] Chr18:958974..11954935 [GRCh38]
Chr18:958975..11954934 [GRCh37]
Chr18:948975..11944934 [NCBI36]
Chr18:18p11.32-11.21
pathogenic
GRCh38/hg38 18p11.32-q23(chr18:136227-80256240)x3 copy number gain See cases [RCV000142244] Chr18:136227..80256240 [GRCh38]
Chr18:136227..78014123 [GRCh37]
Chr18:126227..76115097 [NCBI36]
Chr18:18p11.32-q23
pathogenic
GRCh38/hg38 18p11.22(chr18:9518608-10784749)x1 copy number loss See cases [RCV000052075] Chr18:9518608..10784749 [GRCh38]
Chr18:9518606..10784747 [GRCh37]
Chr18:9508606..10774747 [NCBI36]
Chr18:18p11.22
uncertain significance
GRCh38/hg38 18p11.32-11.21(chr18:2425507-11904118)x3 copy number gain See cases [RCV000136590] Chr18:2425507..11904118 [GRCh38]
Chr18:2425506..11904117 [GRCh37]
Chr18:2415506..11894117 [NCBI36]
Chr18:18p11.32-11.21
pathogenic
GRCh38/hg38 18p11.22-11.21(chr18:10077657-14081888)x3 copy number gain See cases [RCV000136610] Chr18:10077657..14081888 [GRCh38]
Chr18:10077654..14081887 [GRCh37]
Chr18:10067654..14071887 [NCBI36]
Chr18:18p11.22-11.21
pathogenic
GRCh38/hg38 18p11.22-q11.2(chr18:8779843-24685379)x3 copy number gain See cases [RCV000143075] Chr18:8779843..24685379 [GRCh38]
Chr18:8779841..22265343 [GRCh37]
Chr18:8769841..20519341 [NCBI36]
Chr18:18p11.22-q11.2
pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:118760-12642431)x3 copy number gain See cases [RCV000143194] Chr18:118760..12642431 [GRCh38]
Chr18:118760..12642430 [GRCh37]
Chr18:108760..12632430 [NCBI36]
Chr18:18p11.32-11.21
uncertain significance
GRCh38/hg38 18p11.32-q23(chr18:136226-80256240)x3 copy number gain See cases [RCV000143218] Chr18:136226..80256240 [GRCh38]
Chr18:136226..78014123 [GRCh37]
Chr18:126226..76115097 [NCBI36]
Chr18:18p11.32-q23
pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:10001-15380684)x3 copy number gain See cases [RCV000052499] Chr18:10001..15380684 [GRCh38]
Chr18:10001..15380683 [GRCh37]
Chr18:1..15370683 [NCBI36]
Chr18:18p11.32-11.21
pathogenic
1 to 10 of 44 rows

Predicted Target Of
Summary Value
Count of predictions:436
Count of miRNA genes:365
Interacting mature miRNAs:390
Transcripts:ENST00000583691, ENST00000584734
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
106 248 357 154 953 241 393 154 1025 56 392 1405 1382 10 704 109 573 305 102


RefSeq Transcripts NR_146509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AP001180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000579413
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,627,646 - 10,628,846 (-)Ensembl
Ensembl Acc Id: ENST00000583691
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,119 - 10,629,247 (-)Ensembl
Ensembl Acc Id: ENST00000584734
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,304 - 10,629,249 (-)Ensembl
Ensembl Acc Id: ENST00000743532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,629,247 (-)Ensembl
Ensembl Acc Id: ENST00000743533
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,629,237 (-)Ensembl
Ensembl Acc Id: ENST00000743534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,629,221 (-)Ensembl
Ensembl Acc Id: ENST00000743535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,629,216 (-)Ensembl
Ensembl Acc Id: ENST00000743536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,629,213 (-)Ensembl
Ensembl Acc Id: ENST00000743537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,119 - 10,629,213 (-)Ensembl
Ensembl Acc Id: ENST00000743538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,629,247 (-)Ensembl
Ensembl Acc Id: ENST00000743539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,484 - 10,629,246 (-)Ensembl
Ensembl Acc Id: ENST00000743540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,236 (-)Ensembl
Ensembl Acc Id: ENST00000743541
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,629,219 (-)Ensembl
Ensembl Acc Id: ENST00000743542
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,629,213 (-)Ensembl
Ensembl Acc Id: ENST00000743543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,216 (-)Ensembl
Ensembl Acc Id: ENST00000743544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,629,212 (-)Ensembl
Ensembl Acc Id: ENST00000743545
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,216 (-)Ensembl
Ensembl Acc Id: ENST00000743546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,213 (-)Ensembl
Ensembl Acc Id: ENST00000743547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,213 (-)Ensembl
Ensembl Acc Id: ENST00000743548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,629,166 (-)Ensembl
Ensembl Acc Id: ENST00000743549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,627,376 (-)Ensembl
Ensembl Acc Id: ENST00000743550
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,117 - 10,626,644 (-)Ensembl
Ensembl Acc Id: ENST00000743551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,479 - 10,626,670 (-)Ensembl
Ensembl Acc Id: ENST00000743552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,475 - 10,626,643 (-)Ensembl
Ensembl Acc Id: ENST00000743553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,611,459 - 10,618,937 (-)Ensembl
Ensembl Acc Id: ENST00000743554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,117 - 10,619,021 (-)Ensembl
Ensembl Acc Id: ENST00000743555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,618,960 (-)Ensembl
Ensembl Acc Id: ENST00000743556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,612,114 - 10,618,954 (-)Ensembl
Ensembl Acc Id: ENST00000743557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,627,223 - 10,629,247 (-)Ensembl
Ensembl Acc Id: ENST00000743558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1810,627,223 - 10,629,216 (-)Ensembl
RefSeq Acc Id: NR_146509
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381810,610,998 - 10,626,420 (-)NCBI
T2T-CHM13v2.01810,773,128 - 10,788,545 (-)NCBI
Sequence:


1 to 9 of 9 rows
Database
Acc Id
Source(s)
COSMIC LINC01887 COSMIC
Ensembl Genes ENSG00000266604 Ensembl
GTEx ENSG00000266604 GTEx
HGNC ID HGNC:52706 ENTREZGENE
Human Proteome Map LINC01887 Human Proteome Map
NCBI Gene LINC01887 ENTREZGENE
RNAcentral URS00002AF7BE RNACentral
  URS0000587E10 RNACentral
  URS0000BC44E2 RNACentral
1 to 9 of 9 rows