Traj21 (T cell receptor alpha joining 21) - Rat Genome Database

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Gene: Traj21 (T cell receptor alpha joining 21) Mus musculus
Analyze
Symbol: Traj21
Name: T cell receptor alpha joining 21
RGD ID: 11330402
MGI Page MGI
Description:
Type: gene (Ensembl: TR_J_gene)
RefSeq Status: VALIDATED
Previously known as: Gm16815
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,436,247 - 54,436,303 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,436,247 - 54,436,303 (+)EnsemblGRCm39 Ensembl
GRCm381454,198,790 - 54,198,846 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,198,790 - 54,198,846 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,818,465 - 54,818,521 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1505953   PMID:2421164   PMID:2439914   PMID:2524381   PMID:2582491   PMID:2583098   PMID:2993907   PMID:2995827   PMID:3016457   PMID:3025740   PMID:3263646   PMID:3493439  
PMID:3839904   PMID:6092964   PMID:6208487   PMID:6548551   PMID:15608191  


Genomics

Variants

.
Variants in Traj21
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:74
Interacting mature miRNAs:77
Transcripts:ENSMUST00000103720
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000103720   ⟹   ENSMUSP00000143434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,436,247 - 54,436,303 (+)Ensembl
GRCm38.p6 Ensembl1454,198,790 - 54,198,846 (+)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000143434.2
Ensembl Acc Id: ENSMUSP00000143434   ⟸   ENSMUST00000103720


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000076908 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103720.2 UniProtKB/TrEMBL
MGD MGI:4439739 ENTREZGENE
NCBI Gene Traj21 ENTREZGENE
PhenoGen Traj21 PhenoGen
UniProt A0A0G2JG57_MOUSE UniProtKB/TrEMBL