Trbc1 (T cell receptor beta, constant region 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Trbc1 (T cell receptor beta, constant region 1) Mus musculus
Analyze
Symbol: Trbc1
Name: T cell receptor beta, constant region 1
RGD ID: 11309931
MGI Page MGI
Description: Predicted to enable signaling receptor activity. Predicted to be located in plasma membrane. Predicted to be part of alpha-beta T cell receptor complex. Orthologous to several human genes including TRBC1 (T cell receptor beta constant 1) and TRBC2 (T cell receptor beta constant 2).
Type: gene (Ensembl: TR_C_gene)
RefSeq Status: VALIDATED
Previously known as: Gm16802; Tcrb-C; Tcrb-C1
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,515,153 - 41,516,599 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,515,152 - 41,516,815 (+)EnsemblGRCm39 Ensembl
GRCm38641,538,219 - 41,539,665 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,538,218 - 41,539,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37641,488,218 - 41,489,664 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera641,490,881 - 41,492,327 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map619.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:3470773   PMID:6336329   PMID:20578039   PMID:21873635  


Genomics

Comparative Map Data
Trbc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,515,153 - 41,516,599 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,515,152 - 41,516,815 (+)EnsemblGRCm39 Ensembl
GRCm38641,538,219 - 41,539,665 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,538,218 - 41,539,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37641,488,218 - 41,489,664 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera641,490,881 - 41,492,327 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map619.69NCBI
TRBC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,791,694 - 142,793,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,791,694 - 142,793,368 (+)EnsemblGRCh38hg38GRCh38
Build 367142,199,506 - 142,200,953 (+)NCBINCBI36Build 36hg18NCBI36
Celera7137,326,681 - 137,328,128 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,828,035 - 136,829,482 (+)NCBIHuRef
CHM1_17142,425,666 - 142,427,113 (+)NCBICHM1_1
T2T-CHM13v2.07144,147,412 - 144,148,859 (+)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:110
Interacting mature miRNAs:114
Transcripts:ENSMUST00000103291
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000103291   ⟹   ENSMUSP00000100099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,515,152 - 41,516,281 (+)Ensembl
GRCm38.p6 Ensembl641,538,218 - 41,539,347 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192856   ⟹   ENSMUSP00000141715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl641,515,152 - 41,516,815 (+)Ensembl
GRCm38.p6 Ensembl641,538,218 - 41,539,881 (+)Ensembl
Protein Sequences
GenBank Protein AAA40199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000141715.2
Ensembl Acc Id: ENSMUSP00000141715   ⟸   ENSMUST00000192856
Ensembl Acc Id: ENSMUSP00000100099   ⟸   ENSMUST00000103291
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4439726 AgrOrtholog
Ensembl Genes ENSMUSG00000076490 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000192856.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Immune_Resp_Modulators UniProtKB/TrEMBL
MGD MGI:4439726 ENTREZGENE
NCBI Gene Trbc1 ENTREZGENE
PANTHER T CELL RECEPTOR BETA CONSTANT 2 UniProtKB/TrEMBL
  TAPASIN UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
PhenoGen Trbc1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0A6YWV4_MOUSE UniProtKB/TrEMBL