Trav3n-3 (T cell receptor alpha variable 3N-3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Trav3n-3 (T cell receptor alpha variable 3N-3) Mus musculus
Analyze
No known orthologs.
Symbol: Trav3n-3
Name: T cell receptor alpha variable 3N-3
RGD ID: 11276164
MGI Page MGI
Description: Orthologous to human TRAV5 (T cell receptor alpha variable 5).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000076814; Gm10901
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,521,126 - 53,521,632 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,521,042 - 53,521,632 (+)EnsemblGRCm39 Ensembl
GRCm381453,283,669 - 53,284,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,283,585 - 53,284,175 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,903,344 - 53,903,850 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1449,949,277 - 49,950,069 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15608191   PMID:16141072   PMID:16141073  


Genomics


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000103625   ⟹   ENSMUSP00000100402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,521,353 - 53,521,628 (+)Ensembl
GRCm38.p6 Ensembl1453,283,896 - 53,284,171 (+)Ensembl
Ensembl Acc Id: ENSMUST00000197557   ⟹   ENSMUSP00000142822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,521,042 - 53,521,632 (+)Ensembl
GRCm38.p6 Ensembl1453,283,585 - 53,284,175 (+)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000100376.3
  ENSMUSP00000100402.3
  ENSMUSP00000142822.2
  ENSMUSP00000143158.2
Ensembl Acc Id: ENSMUSP00000142822   ⟸   ENSMUST00000197557
Ensembl Acc Id: ENSMUSP00000100402   ⟸   ENSMUST00000103625
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JEM0-F1-model_v2 AlphaFold A0A0G2JEM0 1-114 view protein structure

Promoters
RGD ID:8682238
Promoter ID:EPDNEW_M19150
Type:initiation region
Name:AK041407_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381453,283,622 - 53,283,682EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3782518 AgrOrtholog
Ensembl Genes ENSMUSG00000093953 UniProtKB/TrEMBL
  ENSMUSG00000094877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103599.3 UniProtKB/TrEMBL
  ENSMUST00000103625.3 UniProtKB/TrEMBL
  ENSMUST00000196023.2 UniProtKB/TrEMBL
  ENSMUST00000197557.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_variable_domain UniProtKB/TrEMBL
MGD MGI:3782518 ENTREZGENE
NCBI Gene Trav3n-3 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 1-2 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav3n-3 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B614_MOUSE UniProtKB/TrEMBL
  A0A0G2JEM0_MOUSE UniProtKB/TrEMBL