Traj20 (T cell receptor alpha joining 20) - Rat Genome Database

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Gene: Traj20 (T cell receptor alpha joining 20) Mus musculus
Analyze
Symbol: Traj20
Name: T cell receptor alpha joining 20
RGD ID: 11269015
MGI Page MGI
Description:
Type: gene (Ensembl: TR_J_gene)
RefSeq Status: VALIDATED
Previously known as: Gm16816
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,436,898 - 54,436,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,436,898 - 54,436,955 (+)EnsemblGRCm39 Ensembl
GRCm381454,199,441 - 54,199,498 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,199,441 - 54,199,498 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,819,116 - 54,819,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:1505953   PMID:2421164   PMID:2439914   PMID:2524381   PMID:2582491   PMID:2583098   PMID:2993907   PMID:2995827   PMID:3016457   PMID:3025740   PMID:3263646   PMID:3493439  
PMID:3839904   PMID:6092964   PMID:6208487   PMID:6548551   PMID:15608191  



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Variants in Traj20
2 total Variants

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:44
Interacting mature miRNAs:44
Transcripts:ENSMUST00000103721
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse

1 to 10 of 24 rows





RefSeq Transcripts NG_007044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT030634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000103721   ⟹   ENSMUSP00000143213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1454,436,898 - 54,436,955 (+)Ensembl
GRCm38.p6 Ensembl1454,199,441 - 54,199,498 (+)Ensembl
Ensembl Protein ENSMUSP00000143213.2
Ensembl Acc Id: ENSMUSP00000143213   ⟸   ENSMUST00000103721



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000076909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103721.3 UniProtKB/TrEMBL
MGD MGI:4439740 ENTREZGENE
NCBI Gene Traj20 ENTREZGENE
PhenoGen Traj20 PhenoGen
UniProt A0A0G2JFK9_MOUSE UniProtKB/TrEMBL