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Gene: Gm9991 (predicted gene 9991) Mus musculus

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Symbol:

Gm9991

Name:

predicted gene 9991

RGD ID:

11082490

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

EG433332; ENSMUSG00000056128

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	90,588,683 - 90,607,377 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	90,588,752 - 90,607,518 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	90,674,466 - 90,679,655 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	90,675,161 - 90,679,793 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	92,571,736 - 92,576,368 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	92,505,565 - 92,510,197 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	91,100,246 - 91,104,878 (+)	NCBI		MGSCv36	mm8
Celera	1	93,620,557 - 93,625,166 (+)	NCBI		Celera
Cytogenetic Map	1	D	NCBI
cM Map	1	45.53	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:24316575

Genomics

Variants

Variants in Gm9991
1034 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	198
Count of miRNA genes:	176
Interacting mature miRNAs:	187
Transcripts:	ENSMUST00000070048
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
15039333	Nmrs1_m	NAFLD-associated magnetic resonance shift 1 (mouse)					1	89786512	123786512	Mouse
1357847	Jckm2_m	juvenile cystic kidney modifier 2 (mouse)			Not determined		1	74991977	133290937	Mouse
4142394	Mssq1_m	mandible size and shape QTL 1 (mouse)			Not determined			73615692	107615830	Mouse
1300821	Lore1_m	loss of righting induced by ethanol 1 (mouse)			Not determined		1	75549191	92941077	Mouse
10412185	Hcs9_m	hepatocarcinogenesis susceptibility 9 (mouse)			Not determined		1	63854690	189303617	Mouse
1558928	Mord2_m	modifier of retinal degeneration 2 (mouse)			Not determined		1	77123115	110536075	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
14697706	Stsl3a_m	Salmonella typhimurium susceptibility locus 3a (mouse)					1	77476637	95827725	Mouse
12790991	Aath1_m	aortic arch atherosclerosis 1 (mouse)					1	86483929	120483929	Mouse
1357721	Sle17_m	systematic lupus erythematosus susceptibility 17 (mouse)			Not determined		1	39132808	126445310	Mouse
10412238	Alpq5_m	alcohol preference QTL 5 (mouse)			Not determined		1	82832635	116832635	Mouse
1302146	Cocrb1_m	cocaine related behavior 1 (mouse)			Not determined		1	70133533	104139557	Mouse
14696693	Avd2q1_m	attack value day 2 QTL 1 (mouse)					1	78977717	90927722	Mouse
14746998	Mancz1_m	mandible centroid size 1 (mouse)					1	57941351	91941351	Mouse
1301444	Alcw5_m	alcohol withdrawal 5 (mouse)			Not determined		1	58549191	92549443	Mouse
1300746	Skl1_m	skeletal size (tail length) 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
12791004	Aath7_m	aortic arch atherosclerosis 7 (mouse)					1	82832635	116832635	Mouse
14747009	Manh49_m	mandible shape 49 (mouse)					1	57941351	91941351	Mouse
4141725	Wbcq4_m	white blood cell quantitative locus 4 (mouse)			Not determined		1	79858683	113858791	Mouse
12050069	Nabq1_m	nasal bone morphology QTL 1 (mouse)					1	79858683	113858791	Mouse
1300976	Bmd19_m	bone mineral density 19 (mouse)			Not determined		1	73266214	108838414	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
4141914	Gcsfis_m	G-CSF induced splenomegaly (mouse)			Not determined			74516235	148715579	Mouse
27095928	Pglq6_m	pelvic girdle length QTL 6, 10 week (mouse)					1	75976637	148775742	Mouse
27095931	Pglq1_m	pelvic girdle length QTL 1, 5 week (mouse)					1	75976637	128527737	Mouse
13452395	Leusq2_m	leucocytosis susceptibility QTL 2 (mouse)					1	80245593	126386517	Mouse
1301748	Abbp1_m	A/J and C57BL/6 blood pressure 1 (mouse)			Not determined		1	62946755	120529678	Mouse
1558717	Ses1a_m	salmonella enteritidis susceptibility 1a (mouse)			Not determined		1	56726922	90727077	Mouse
1301304	Hrq3_m	heart rate quantitative locus 3 (mouse)			Not determined		1	73615692	107615830	Mouse
1357439	Popoa_m	premature ovulation and primary oocyte arrest (mouse)			Not determined		1	82643189	135615379	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1300989	Lrdg1_m	light induced retinal degeneration 1 (mouse)			Not determined		1	73755175	147125370	Mouse
4141329	Mleu1_m	myeloid leukemia survival 1 (mouse)			Not determined			89786512	123786512	Mouse
1301667	Lxw5_m	lupus BXSB x NZW 5 (mouse)			Not determined		1	58549191	92549443	Mouse
11667074	Led2_m	late embryonic death 2 (mouse)					1	85696027	117195081	Mouse
27095918	Ulnl1_m	ulna length 1, 5 week (mouse)					1	67339159	129727737	Mouse
1301350	Nidd4k_m	Nidd4 on KK-A (mouse)			Not determined		7	82291982	147125370	Mouse
1301162	Skull1_m	skull morphology 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1300841	Ssial1_m	susceptibility to sialadenitis 1 (mouse)			Not determined		1	63920002	153557562	Mouse
26884448	Sklq1_m	skull length QTL 1, 5 week (mouse)					1	75976637	181327565	Mouse
1357679	Egrm1_m	early growth rate, maternal effect 1 (mouse)			Not determined		1	57991977	91992080	Mouse
1301933	Insq6_m	insulin QTL 6 (mouse)			Not determined		1	56726922	90727077	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_878398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK039913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000070048

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	90,588,752 - 90,607,518 (+)	Ensembl
GRCm38.p6 Ensembl	1	90,675,161 - 90,679,793 (+)	Ensembl

RefSeq Acc Id:

XR_878398

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	90,588,683 - 90,607,377 (+)	NCBI
GRCm38	1	90,674,466 - 90,679,655 (+)	NCBI

Sequence:

show sequence

GCTAATCTGTCTGGTCCTCGTGCCCCTGCCTTGCTCCGTGGTCAGGGCAACAGAGTGAGATTTC
TGGCCATTTGCTTCCAGCCGGGCAGGAGACTCATCCACACTGCATATCTGTAGTCTGTTCCCTT
TCGCTGCCTTGTGTTCAATTGTGTCTGTGTATGAGGGTGTGTCTACTCACCAGATGGAGACCTT
TTGGTCATTTCCAGCTTAGAGGAATTATGAATACAGCTATGCCGGAGGTCAAAGGCTGGTGTGA
TTCTTCAGGACATCTGGGACCCGAGACTGGCTGATTAGTCGAGGCTGACTGCCCAGGGAGTCAC
AAGGGTCTACCTGCCCCTGCTCCGAAGAGGTCTCTAAGGAGGTGGAGCCTTTTGTTCGGGGCCA
TTATCTTATGTTGTACCCATCTGAGCCCATTCATGCCTGCTCCACAGAAAGTTGAAGCCCTGAA
CCACTGACAGGCAGGAGCAGATTCTCAATGGCCTCACTCAGCATGGTGTGCCGTCCTCACTCAG
CCTAGTGTGCCATCTTCAGAACTGGACAGATGCCTGGCAGCTTGAAGTACACAGTGACAGAGTC
AACTCTGCAAACACTGAATGAAATTCTGACTACAGTATTCCCAGAGCATGCATGGAGAGGAGCC
ACCTCAGCCACTCAGGGAGTACAGAATCAAGAAGATCTGAAGCTGACCCTTTGCATTCCTACTG
AAATGCAGATAATTCCTAAGCCTTCCAGACACCAAGGTCAACCAAAAAGGCAGCATCCGGTCCT
ACTGCAGACCATGTCTTCTGCCTACATGTCAAGCTGCACGTGTCACCCAGCCCAGAGTACAAAT
GTCAGAGTATCACCGGAAGCCCTGGCAAGATGCTGCTTTCAGAGGAGGTTCTGATCATCTCCAT
GCTTTCCTGTATCTGAAAGCCTCTCACCATGTGTGTTACATTGCTAATGCAAAGGTACAGCAAA
GACTCGAGGGAAAGAGAAAGAAACAAATAAAAACTATAACTCATTCCTAGTGCAGAGTCTGCTG
CGCATAGGGAAGGCAATAGGAGTCACGCATTTGTGTCTCCAGATGGTGTCAAATGTACACAGGG
AAGATGCATCTCCCTGGAGCAAGAGGTCTCAGTGCAGGTGGGGGGAGGCGGGGCCACTGATGGG
AGTAGTGGGAACATCTGGACCCTTGGCTCCGTTGGCTTAGCCCCTTGACAGGAAATCAAATATT
ATAGAAAGGAAAAGGGTCGTGCCTGTGTCCCGGGTGTGAGAGACTTGCAGGACTACAGAGAAGG
TTGTGGTCATCTCTGCTTGACAGCATTGCAGCTGTGCTGGACCGCACTTGAGAGTATCTTAGCT
ACCACAACAACAGGAAGTCATAGGAGCTCACATCTATCCTTCTCGGCATCCTTAAATGTGCTTT
CTACTGTTCTGGGCAAACATTGAAGGACA

hide sequence

Protein Sequences


GenBank Protein	BAC30477	(Get FASTA)	NCBI Sequence Viewer
	EDL40087	(Get FASTA)	NCBI Sequence Viewer

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000056128	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000070048	ENTREZGENE
MGD	MGI:3643217	ENTREZGENE
NCBI Gene	Gm9991	ENTREZGENE
PhenoGen	Gm9991	PhenoGen
RNAcentral	URS0000770F06	RNACentral
UniProt	Q8CA16_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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