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Gene: D130079A08Rik (RIKEN cDNA D130079A08 gene) Mus musculus

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Symbol:

D130079A08Rik

Name:

RIKEN cDNA D130079A08 gene

RGD ID:

11081690

MGI Page

MGI

Description:

Is expressed in nervous system and sensory organ.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

lin; linc-3a

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	104,525,869 - 104,696,772 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	104,525,867 - 104,696,773 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	104,288,433 - 104,459,336 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	104,288,431 - 104,459,336 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	104,844,293 - 104,858,553 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	103,330,755 - 103,345,015 (-)	NCBI		MGSCv36	mm8
Celera	14	103,059,146 - 103,073,407 (-)	NCBI		Celera
Cytogenetic Map	14	E2.3	NCBI
cM Map	14	54.18	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:21267068	PMID:31286854

Variants in D130079A08Rik
5697 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558823	Tbbmd6_m	total body bone mineral density 6 (mouse)			Not determined		14	77073696	111073787	Mouse
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
10054475	Ossc3_m	osteosarcoma susceptibility 3 (mouse)			Not determined		14	70863768	104863926	Mouse
4142508	Tgq25_m	triglyceride QTL 25 (mouse)			Not determined			85134068	119134068	Mouse
1300551	Lprm3_m	lymphoproliferation modifier 3 (mouse)			Not determined		14	71221224	105221344	Mouse
1558819	Ossc2_m	osteosarcoma susceptibility 2 (mouse)			Not determined		14	74394976	108395093	Mouse
12792981	Fbmd5_m	femoral bone mineral density 5, females only (mouse)					14	99838217	125033054	Mouse
1301844	Pgia29_m	proteoglycan induced arthritis 29 (mouse)			Not determined		14	74352296	108352384	Mouse
14928314	Manh77_m	mandible shape 77 (mouse)					14	76767790	110767790	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_168067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC129299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC151910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK047857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK051502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000227158

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,616,277 - 104,696,752 (-)	Ensembl
GRCm38.p6 Ensembl	14	104,378,841 - 104,459,316 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000228095

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,525,867 - 104,696,772 (-)	Ensembl
GRCm38.p6 Ensembl	14	104,288,431 - 104,459,336 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000228613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,682,512 - 104,696,772 (-)	Ensembl
GRCm38.p6 Ensembl	14	104,445,076 - 104,459,336 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000241864

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,527,634 - 104,696,772 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000242595

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,621,809 - 104,696,772 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352854

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,527,634 - 104,696,772 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352855

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,530,100 - 104,696,765 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352856

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,532,626 - 104,696,773 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352857

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,621,821 - 104,696,772 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352858

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,643,832 - 104,696,700 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352859

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,527,637 - 104,541,911 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352860

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,686,245 - 104,696,772 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352861

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,643,805 - 104,654,208 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352862

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,686,092 - 104,689,405 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352863

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,686,094 - 104,689,400 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352864

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,686,095 - 104,689,389 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000352865

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	104,686,262 - 104,689,377 (-)	Ensembl

RefSeq Acc Id:

NR_168067

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	104,525,869 - 104,696,772 (-)	NCBI
GRCm38	14	104,288,433 - 104,459,336 (-)	NCBI

Sequence:

show sequence

GAGCTTTTCCAGAGGAAGGGCTGATGAGAAGAGTCGCAGCTGAATAGTGAGAGAAAAAGCCTGGTATTTATTGCTTTTGTTTGGCTTTTGGCTACAGAGACAGGAACCTTCTAATGGGCAATATTTGT
CAAACTTCTGTGTGATATTTTGAGTCCAGAAATTGGATGTAGGTAGTGTCATCTGAAGGACATTAGAAAGAAGGATGGAGATGCTTCATAGAAGTAGGAATGGAGACGCTTCACAGTTCATGGCTGAT
ATTCTTCTAGGCTACTTCCAGTTTCCAGGAAAAGAATGCTGCATCTTTGGGACTTCGCTCCTAGTTGATAAGGATGAAACCATTTCAGAATGCCTGTGGTGTGTGCTCATGAGCAATGCCGAGACCGG
AAGCTTCTAGTAGGCCTGAGGCACATTGAGCTCGCATCTTTGGTACAATGACTGACACAAGTCAGCAGAGTATAAACAAGATGAGAATTCAGCAGAACACATGTATTATAATTGATTGACAAAATAAA
GATGATTTCTGCTAAGACTAGTGTAAGTATGAATTTGAGAATTTAAAGGTTTTTTTTTGGGGGCGGGGGGAGGAGAATTTCAAATGAGGAAAATGTATTTGAATAGGCCCAAAATTGACACTTTCTTT
TCTAATAATTAATTAATTTTTATAATAAAATAACTGCCATGAATATGATAATATAAATCTATTATTATCTGTATTAGTTGCCTTTCTGGTTTTGATACAAACAGCTGAAAGAAGCAATTTAAGGAAGA
AAATTTATTTCCCAGGGCTGGGATCAGGGAGAGACAAAAATGGAGAGAAGCAGAGATGTAAACAGACAGAGAGGGAGAAAGACAGAGACAGAAGAGAGAGAGACAGAAATGTAAAGAGACAGAGAGAG
ACTGTGAGGAAAAGGTTAACACAGAACCTGCCTATGGTTCCTAACTTATATCTCCTGTGAGCAACTCCAGTTTTCAACATAGGCCTCGAATCCTAAAGCCTCCATAGTCTTTCCATTGGTAACATCAG
CTGGGGATCTACATGAGCGTTGACGCTACATTTCCTACTTGAACAATGACATCACCTAACTTCTTCACAACAGACTCAAGAGCTCTACCATCCGCAATGGCTAGAACAAGGGTCAGCACACACTGAGG
ACTGACCAACTATTCTGTTAAAGGCATGCAGGGTTGGAGAATTCGTGTTTGTTTGTTTTAAATTATGCTTGAGAGAATTTGGTTAGTGCTAAGGGATTTGGGCTGATCACTTTAGGAGAGGAAGATCA
AAAGGATGAATTCATTTAGCTTCGGTTTCACTTTATTAGTTTCAGGAATGTTTTATTGTGTCACTCGCTGTACACAGGGTGCTATGTTATATGAGAATATTTTCACACTTGTATGTACTGTACATTGA
GCGTATTGCCCACACATGTTCAAACACTGCCTTTCTTCCTTCTCTTCCTCCTATTAATCCCGCTTTCTCTAGAAAGTTTCACTTCTACTTTTGTGTCAAATACATACTTGATCTTATGTATCTATCTA
AAAATCTAGAATCTACAACTGAGAAAACATATTTTCGGAGACTGGTTTAAGTCACTTTATATGATCTATTGTCCTAGTTATATACATTTTCTTGCAACTAATATAGTTTTGGCTTCTTTGTGGCTAAA
GAAACTCCACTGTACTAGTGTATGACATTTTCTTTTCCATCCCTCTGTTAATGGACACATAGGATGACCCCGTAGCTCAGCTGTTGTGAACAGTGCTGTGGTACACATTAATGTGCAGATGTCTCTGT
GAGGTTGATTTGGAACGCTCATGGAAACCCCCCAGGACTGGATGGCTGGTCATTTTCAGACCTTCTTTTAGGTTTTTGAGGAACATCCAGATTGTTTTCCATGTGTGGCTAGACTAGTTTACCTTCTC
ACCAATCATGTATAAGGGCCCACTTTGTCCATATATTTATCAACATTTATGCTCTTAATGATGAAGATTCCATCTAGGGTGAGATGTAGCTTTAAGGTCTGTTTCTCTGATGGCTAGTAAGGCTGAAT
ATTTTTGTGCATTTACAGTCACTTATTCATTTAACAAGAACTGTACATTTAGTACCTGAATTGTTTGATATTTTTAAAGCTATTTTTTATTCTAGTTGTTTACCTTCTATCAGATAAGTAACTATTCA
AGATTTTGTTCCATTTGTAAGCTGTTTCTTCACTGAATTAGCTACACTGAAACTTTTTAATTTCAAAAGGTCGCATTTGTCAATTGCTGGCATTATTAAATTCTTTTCTTGTATCG

hide sequence


GenBank Protein	BAC39104	(Get FASTA)	NCBI Sequence Viewer

RGD ID:

15094503

Promoter ID:

EPDNEWNC_M2404

Type:

single initiation site

Name:

D130079A08Rik_1

Description:

RIKEN cDNA D130079A08 gene [Source:MGISymbol;Acc:MGI:2444500]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	104,459,336 - 104,459,396	EPDNEWNC

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000115424	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000228095	ENTREZGENE
MGD	MGI:2444500	ENTREZGENE
NCBI Gene	D130079A08Rik	ENTREZGENE
PhenoGen	D130079A08Rik	PhenoGen
RNAcentral	URS00009B7D2C	RNACentral
	URS00009C3BC8	RNACentral
	URS0000CC87D8	RNACentral
	URS0000CCA539	RNACentral
	URS00025E8D97	RNACentral
	URS00025F1B48	RNACentral
UniProt	Q8BNC5_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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