PDZPH1P (PDZ and pleckstrin homology domains 1, pseudogene) - Rat Genome Database

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Gene: PDZPH1P (PDZ and pleckstrin homology domains 1, pseudogene) Homo sapiens
Analyze
Symbol: PDZPH1P
Name: PDZ and pleckstrin homology domains 1, pseudogene
RGD ID: 10755593
HGNC Page HGNC:51488
Description: INTERACTS WITH (+)-schisandrin B (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); bisphenol A (ortholog)
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385103,430,533 - 103,526,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5103,430,533 - 103,526,618 (-)EnsemblGRCh38hg38GRCh38
GRCh375102,766,234 - 102,862,319 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q21.2NCBI
CHM1_15102,199,413 - 102,295,495 (-)NCBICHM1_1
T2T-CHM13v2.05103,938,714 - 104,034,792 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PDZPH1P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385103,430,533 - 103,526,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5103,430,533 - 103,526,618 (-)EnsemblGRCh38hg38GRCh38
GRCh375102,766,234 - 102,862,319 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q21.2NCBI
CHM1_15102,199,413 - 102,295,495 (-)NCBICHM1_1
T2T-CHM13v2.05103,938,714 - 104,034,792 (-)NCBIT2T-CHM13v2.0
Pdzph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391759,185,803 - 59,298,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1759,185,803 - 59,298,370 (-)EnsemblGRCm39 Ensembl
GRCm381758,878,808 - 58,991,375 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1758,878,808 - 58,991,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371759,018,231 - 59,130,798 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361758,564,143 - 58,676,706 (-)NCBIMGSCv36mm8
Celera1763,218,091 - 63,330,714 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1730.57NCBI
Pdzph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89106,038,530 - 106,176,711 (-)NCBIGRCr8
mRatBN7.2998,591,222 - 98,729,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl998,591,228 - 98,690,913 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9107,006,879 - 107,147,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09112,134,645 - 112,275,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09110,478,261 - 110,619,350 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09105,530,933 - 105,660,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9105,531,195 - 105,655,471 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09105,131,605 - 105,269,691 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4997,387,503 - 97,522,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera996,033,506 - 96,163,017 (-)NCBICelera
Cytogenetic Map9q36NCBI

Variants

.
Variants in PDZPH1P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:131
Interacting mature miRNAs:132
Transcripts:ENST00000412514, ENST00000602846
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1004 1384 1874 954 2555 395 736 1 175 506 64 1827 2731 3104 12 1823 393 933 495 114

Sequence


Ensembl Acc Id: ENST00000412514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5103,430,533 - 103,526,618 (-)Ensembl
Ensembl Acc Id: ENST00000602846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5103,430,406 - 103,461,343 (-)Ensembl
Ensembl Acc Id: ENST00000636538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5103,473,335 - 103,485,879 (-)Ensembl
Ensembl Acc Id: ENST00000636781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5103,447,781 - 103,499,096 (-)Ensembl
RefSeq Acc Id: XM_011543789   ⟹   XP_011542091
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385103,432,459 - 103,503,988 (-)NCBI
RefSeq Acc Id: XM_011549018   ⟹   XP_011547320
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_15102,201,339 - 102,272,867 (-)NCBI

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:51488 AgrOrtholog
COSMIC PDZPH1P COSMIC
Ensembl Genes ENSG00000226926 Ensembl, ENTREZGENE
GTEx ENSG00000226926 GTEx
HGNC ID HGNC:51488 ENTREZGENE
Human Proteome Map PDZPH1P Human Proteome Map
NCBI Gene PDZPH1P ENTREZGENE