RNU6-1223P (RNA, U6 small nuclear 1223, pseudogene) - Rat Genome Database

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Gene: RNU6-1223P (RNA, U6 small nuclear 1223, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1223P
Name: RNA, U6 small nuclear 1223, pseudogene
RGD ID: 10413522
HGNC Page HGNC:48186
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,616,492 - 1,616,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,616,492 - 1,616,595 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,616,491 - 1,616,594 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.3NCBI
CHM1_1191,616,325 - 1,616,428 (-)NCBICHM1_1
T2T-CHM13v2.0191,587,317 - 1,587,420 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1223P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38191,616,492 - 1,616,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl191,616,492 - 1,616,595 (-)EnsemblGRCh38hg38GRCh38
GRCh37191,616,491 - 1,616,594 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.3NCBI
CHM1_1191,616,325 - 1,616,428 (-)NCBICHM1_1
T2T-CHM13v2.0191,587,317 - 1,587,420 (-)NCBIT2T-CHM13v2.0
Gm22212
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39663,177,027 - 63,177,130 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl663,177,025 - 63,177,130 (-)EnsemblGRCm39 Ensembl
GRCm38663,200,043 - 63,200,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl663,200,041 - 63,200,146 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6C1NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:258
Count of miRNA genes:247
Interacting mature miRNAs:254
Transcripts:ENST00000517124
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
668 1280 1365 965 2084 982 1516 4 299 1038 189 1455 3439 3185 51 1314 536 1165 1138 123

Sequence


Ensembl Acc Id: ENST00000517124
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl191,616,492 - 1,616,595 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1223P COSMIC
Ensembl Genes ENSG00000252933 Ensembl, ENTREZGENE
GTEx ENSG00000252933 GTEx
HGNC ID HGNC:48186 ENTREZGENE
Human Proteome Map RNU6-1223P Human Proteome Map
NCBI Gene RNU6-1223P ENTREZGENE