RNU6-638P (RNA, U6 small nuclear 638, pseudogene) - Rat Genome Database

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Gene: RNU6-638P (RNA, U6 small nuclear 638, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-638P
Name: RNA, U6 small nuclear 638, pseudogene
RGD ID: 10413475
HGNC Page HGNC:47601
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,696,694 - 78,696,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,696,694 - 78,696,797 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,692,776 - 76,692,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q25.3NCBI
CHM1_11776,756,689 - 76,756,792 (-)NCBICHM1_1
T2T-CHM13v2.01779,591,616 - 79,591,719 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
RNU6-638P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381778,696,694 - 78,696,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1778,696,694 - 78,696,797 (-)EnsemblGRCh38hg38GRCh38
GRCh371776,692,776 - 76,692,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q25.3NCBI
CHM1_11776,756,689 - 76,756,792 (-)NCBICHM1_1
T2T-CHM13v2.01779,591,616 - 79,591,719 (-)NCBIT2T-CHM13v2.0
LOC119874386
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1222,181,022 - 22,181,129 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01222,788,664 - 22,788,771 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1222,788,664 - 22,788,771 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11222,279,048 - 22,279,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01222,396,221 - 22,396,328 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01222,521,076 - 22,521,183 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:107
Interacting mature miRNAs:114
Transcripts:ENST00000516582
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
668 780 934 532 1515 704 1223 4 229 1185 152 1156 2691 2696 45 985 370 544 977 86

Sequence


Ensembl Acc Id: ENST00000516582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1778,696,694 - 78,696,797 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-638P COSMIC
Ensembl Genes ENSG00000252391 Ensembl, ENTREZGENE
GTEx ENSG00000252391 GTEx
HGNC ID HGNC:47601 ENTREZGENE
Human Proteome Map RNU6-638P Human Proteome Map
NCBI Gene RNU6-638P ENTREZGENE