RNA5SP206 (RNA, 5S ribosomal pseudogene 206) - Rat Genome Database

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Gene: RNA5SP206 (RNA, 5S ribosomal pseudogene 206) Homo sapiens
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Symbol: RNA5SP206
Name: RNA, 5S ribosomal pseudogene 206
RGD ID: 10413195
HGNC Page HGNC:43106
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S206
Related Functional Gene: RNA5S1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,078,508 - 32,078,628 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,078,508 - 32,078,628 (-)EnsemblGRCh38hg38GRCh38
GRCh37632,046,285 - 32,046,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map6p21.33NCBI
CHM1_1632,048,492 - 32,048,612 (-)NCBICHM1_1
T2T-CHM13v2.0631,931,711 - 31,931,831 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:146
Count of miRNA genes:125
Interacting mature miRNAs:127
Transcripts:ENST00000516703
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
331 390 378 267 610 162 307 28 183 17 491 658 921 12 470 70 240 270 12

Sequence


Ensembl Acc Id: ENST00000516703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl632,078,508 - 32,078,628 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP206 COSMIC
Ensembl Genes ENSG00000252512 Ensembl, ENTREZGENE
GTEx ENSG00000252512 GTEx
HGNC ID HGNC:43106 ENTREZGENE
Human Proteome Map RNA5SP206 Human Proteome Map
NCBI Gene RNA5SP206 ENTREZGENE