RNU6-882P (RNA, U6 small nuclear 882, pseudogene) - Rat Genome Database

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Gene: RNU6-882P (RNA, U6 small nuclear 882, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-882P
Name: RNA, U6 small nuclear 882, pseudogene
RGD ID: 10413055
HGNC Page HGNC:47845
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,919,051 - 9,919,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,919,051 - 9,919,153 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,960,735 - 9,960,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.3NCBI
CHM1_139,910,883 - 9,910,985 (-)NCBICHM1_1
T2T-CHM13v2.039,911,074 - 9,911,176 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-882P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3839,919,051 - 9,919,153 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl39,919,051 - 9,919,153 (-)EnsemblGRCh38hg38GRCh38
GRCh3739,960,735 - 9,960,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p25.3NCBI
CHM1_139,910,883 - 9,910,985 (-)NCBICHM1_1
T2T-CHM13v2.039,911,074 - 9,911,176 (-)NCBIT2T-CHM13v2.0
Gm26485
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39316,877,381 - 16,877,472 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl316,877,413 - 16,877,476 (-)EnsemblGRCm39 Ensembl
GRCm38316,823,217 - 16,823,308 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl316,823,249 - 16,823,312 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3A1NCBI
LOC120094976
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8953,552,757 - 53,552,863 (-)NCBIGRCr8
mRatBN7.2946,060,656 - 46,060,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl946,060,656 - 46,060,762 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map9q22NCBI
LOC119864058
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha177,978,832 - 7,978,934 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0178,150,353 - 8,150,455 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl178,150,353 - 8,150,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1178,035,231 - 8,035,333 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0178,039,071 - 8,039,173 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0178,058,698 - 8,058,800 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:130
Interacting mature miRNAs:131
Transcripts:ENST00000391025
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
922 1903 2037 1439 2839 1460 1788 2 481 452 335 2031 4142 3784 13 1633 692 1290 1213 154

Sequence


Ensembl Acc Id: ENST00000391025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl39,919,051 - 9,919,153 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-882P COSMIC
Ensembl Genes ENSG00000212327 Ensembl, ENTREZGENE
GTEx ENSG00000212327 GTEx
HGNC ID HGNC:47845 ENTREZGENE
Human Proteome Map RNU6-882P Human Proteome Map
NCBI Gene RNU6-882P ENTREZGENE