RNU4-85P (RNA, U4 small nuclear 85, pseudogene) - Rat Genome Database

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Gene: RNU4-85P (RNA, U4 small nuclear 85, pseudogene) Homo sapiens
Analyze
Symbol: RNU4-85P
Name: RNA, U4 small nuclear 85, pseudogene
RGD ID: 10400085
HGNC Page HGNC:47021
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU4-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38319,996,803 - 19,996,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl319,996,803 - 19,996,925 (+)EnsemblGRCh38hg38GRCh38
GRCh37320,038,295 - 20,038,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p24.3NCBI
CHM1_1319,990,379 - 19,990,501 (+)NCBICHM1_1
T2T-CHM13v2.0320,000,870 - 20,000,992 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU4-85P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38319,996,803 - 19,996,925 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl319,996,803 - 19,996,925 (+)EnsemblGRCh38hg38GRCh38
GRCh37320,038,295 - 20,038,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3p24.3NCBI
CHM1_1319,990,379 - 19,990,501 (+)NCBICHM1_1
T2T-CHM13v2.0320,000,870 - 20,000,992 (+)NCBIT2T-CHM13v2.0
LOC119868698
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_TashaX61,927,268 - 61,927,421 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X72,462,813 - 72,462,966 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX72,462,813 - 72,462,966 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X70,137,314 - 70,137,467 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X71,743,158 - 71,743,311 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X71,374,779 - 71,374,932 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENST00000364675
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
85 173 157 106 311 153 267 2 52 226 43 180 538 469 34 236 65 282 206 14

Sequence


Ensembl Acc Id: ENST00000364675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl319,996,803 - 19,996,925 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU4-85P COSMIC
Ensembl Genes ENSG00000201545 Ensembl, ENTREZGENE
GTEx ENSG00000201545 GTEx
HGNC ID HGNC:47021 ENTREZGENE
Human Proteome Map RNU4-85P Human Proteome Map
NCBI Gene RNU4-85P ENTREZGENE