RNU6-336P (RNA, U6 small nuclear 336, pseudogene) - Rat Genome Database

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Gene: RNU6-336P (RNA, U6 small nuclear 336, pseudogene) Homo sapiens
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Symbol: RNU6-336P
Name: RNA, U6 small nuclear 336, pseudogene
RGD ID: 10400020
HGNC Page HGNC:47299
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,434,391 - 22,434,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,434,391 - 22,434,497 (+)EnsemblGRCh38hg38GRCh38
GRCh37822,291,904 - 22,292,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8p21.3NCBI
CHM1_1822,494,000 - 22,494,106 (+)NCBICHM1_1
T2T-CHM13v2.0822,708,221 - 22,708,327 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model




RNU6-336P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,434,391 - 22,434,497 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,434,391 - 22,434,497 (+)EnsemblGRCh38hg38GRCh38
GRCh37822,291,904 - 22,292,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8p21.3NCBI
CHM1_1822,494,000 - 22,494,106 (+)NCBICHM1_1
T2T-CHM13v2.0822,708,221 - 22,708,327 (+)NCBIT2T-CHM13v2.0
LOC120097649
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81638,190,582 - 38,190,688 (-)NCBIGRCr8
mRatBN7.21633,179,893 - 33,179,999 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1633,179,893 - 33,179,999 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1636,628,221 - 36,628,327 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p11NCBI

.

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:128
Interacting mature miRNAs:128
Transcripts:ENST00000364891
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
35 61 36 39 81 125 134 1 81 31 80 35 214 119 9 65 26 73 53 1



Ensembl Acc Id: ENST00000364891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl822,434,391 - 22,434,497 (+)Ensembl


Database
Acc Id
Source(s)
COSMIC RNU6-336P COSMIC
Ensembl Genes ENSG00000201761 Ensembl, ENTREZGENE
GTEx ENSG00000201761 GTEx
HGNC ID HGNC:47299 ENTREZGENE
Human Proteome Map RNU6-336P Human Proteome Map
NCBI Gene RNU6-336P ENTREZGENE