RNU6-1076P (RNA, U6 small nuclear 1076, pseudogene) - Rat Genome Database

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Gene: RNU6-1076P (RNA, U6 small nuclear 1076, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: RNU6-1076P
Name: RNA, U6 small nuclear 1076, pseudogene
RGD ID: 10399358
HGNC Page HGNC:48039
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819223,158 - 223,261 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19223,158 - 223,261 (-)EnsemblGRCh38hg38GRCh38
GRCh3719223,158 - 223,261 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.3NCBI
CHM1_119222,873 - 222,976 (-)NCBICHM1_1
T2T-CHM13v2.019174,416 - 174,519 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENST00000410397
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
4 14 10 9 21 9 17 1 8 1 9 31 25 15 4 7 12

Sequence


Ensembl Acc Id: ENST00000410397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl19223,158 - 223,261 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1076P COSMIC
Ensembl Genes ENSG00000222329 Ensembl, ENTREZGENE
GTEx ENSG00000222329 GTEx
HGNC ID HGNC:48039 ENTREZGENE
Human Proteome Map RNU6-1076P Human Proteome Map
NCBI Gene RNU6-1076P ENTREZGENE