Advanced Search (OLGA)

Gene: Gm39213 (predicted gene, 39213) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Gm39213

Name:

predicted gene, 39213

RGD ID:

10037093

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,620,637 - 85,626,780 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	85,618,547 - 85,626,949 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	84,894,008 - 84,900,151 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
Celera	8	89,193,366 - 89,199,541 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

PMID:14610273

Variants in Gm39213
519 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80793404	89740987	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	52334843	86334843	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NR_168729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_168730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC161765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000240952

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,512 - 85,626,949 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000241283

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,612 - 85,626,786 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000242409

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,619,999 - 85,621,567 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335490

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,618,547 - 85,626,755 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335491

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,619,994 - 85,626,786 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335492

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,006 - 85,626,783 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335493

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,009 - 85,626,783 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335494

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,626,782 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335495

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,626,780 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335496

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,626,780 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335497

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,626,763 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335498

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,626,755 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335499

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,614 - 85,626,786 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335500

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,614 - 85,626,786 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335501

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,623 - 85,626,784 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335502

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,614 - 85,626,758 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335503

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,637 - 85,626,780 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335504

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,621,561 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335505

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,011 - 85,621,557 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000335506

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	85,620,013 - 85,621,052 (+)	Ensembl

RefSeq Acc Id:

NR_168729

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,620,637 - 85,626,780 (+)	NCBI
GRCm38	8	84,894,008 - 84,900,151 (+)	NCBI

Sequence:

show sequence

AGTTGCCCAGAGCCTGAGAAGCGGGATCCCAAGTTCAATAAGAACGCCTGGAGGCCAGACCTTGCGAAATCCGCAAATGGGGTGCCTGCAGAGAGAAAGGATGTTTCTCTCAGTTATTGGACCAGCTC
CTGCCTTCATGCCACCATGCTCCCCACTATGATAATGGACTACACCTATGAAAATGTGAGCAAGCCCCAGTAAAATGTCTTCTTTGGTTGTGGCTCATAATCATCTGTAATGGGATATGATGGACTCT
TCTGGTGTGTCTGGGGACAGCAACAGTGTACTCATACAATCAATCAATCAATCAATCAATAAATAAATGCAGATTCAGTGGGCAATGTAGCACCACAGTGTCCTGTGACAAACA

hide sequence

RefSeq Acc Id:

NR_168730

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,620,637 - 85,626,780 (+)	NCBI
GRCm38	8	84,894,008 - 84,900,151 (+)	NCBI

Sequence:

show sequence

AGTTGCCCAGAGCCTGAGAAGCGGGATCCCAAGTTCAATAAGAACGCCTGGAGGCCAGACCTTGCGAAATCCGCAAATGGGGTGCCTGCAGAGAGAAAGGCAGACACCACGCATGAACCAGCAGCTGT
AGTCCAATCCTGAGGAAGCCGAAAGGCTTGCCAACTGGCCACGGCTGCTTCAGTGGCAAGCTGCCACAGGAACCTCATAAGTTCTTGGGATGTTTCTCTCAGTTATTGGACCAGCTCCTGCCTTCATG
CCACCATGCTCCCCACTATGATAATGGACTACACCTATGAAAATGTGAGCAAGCCCCAGTAAAATGTCTTCTTTGGTTGTGGCTCATAATCATCTGTAATGGGATATGATGGACTCTTCTGGTGTGTC
TGGGGACAGCAACAGTGTACTCATACAATCAATCAATCAATCAATCAATAAATAAATGCAGATTCAGTGGGCAATGTAGCACCACAGTGTCCTGTGACAAACA

hide sequence

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000119989	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000335499	ENTREZGENE
	ENSMUST00000335501	ENTREZGENE
MGD	MGI:5622098	ENTREZGENE
NCBI Gene	Gm39213	ENTREZGENE
PhenoGen	Gm39213	PhenoGen
RNAcentral	URS0001BBE442	RNACentral
	URS0001BBE5D1	RNACentral
	URS00025E4628	RNACentral
	URS00025E6FFD	RNACentral
	URS00025F6604	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message