Gm39336 (predicted gene, 39336) - Rat Genome Database

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Gene: Gm39336 (predicted gene, 39336) Mus musculus
Analyze
Symbol: Gm39336
Name: predicted gene, 39336
RGD ID: 10012583
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,209,633 - 50,213,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,209,621 - 50,213,196 (-)EnsemblGRCm39 Ensembl
GRCm38950,298,333 - 50,301,879 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,300,784 - 50,301,817 (-)EnsemblGRCm38mm10GRCm38
Celera947,589,769 - 47,593,315 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm39336
151 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11080993Tglq7_mtriglyceride level QTL 7 (mouse)95011130051511300Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13524527Bodwtq8_mbody wweight QTL 8 (mouse)94796321550293195Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
13515057Adip20b_madiposity 20b (mouse)94870090853791702Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000214933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,212,083 - 50,213,196 (-)Ensembl
GRCm38.p6 Ensembl950,300,784 - 50,301,817 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,209,621 - 50,213,196 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,209,626 - 50,213,127 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,209,626 - 50,213,123 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,212,084 - 50,213,138 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl950,212,084 - 50,213,129 (-)Ensembl
RefSeq Acc Id: XR_870729
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39950,212,084 - 50,213,179 (-)NCBI
GRCm38950,300,784 - 50,301,879 (-)NCBI
Sequence:
RefSeq Acc Id: XR_870730
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39950,209,633 - 50,213,179 (-)NCBI
GRCm38950,298,333 - 50,301,879 (-)NCBI
Sequence:
RefSeq Acc Id: XR_870731
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39950,212,084 - 50,213,179 (-)NCBI
GRCm38950,300,784 - 50,301,879 (-)NCBI
Sequence:
Promoters
RGD ID:15093592
Promoter ID:EPDNEWNC_M1499
Type:single initiation site
Name:Gm39336_1
Description:predicted gene, 39336 [Source:MGI Symbol;Acc:MGI:5622221]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38950,301,825 - 50,301,885EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000111359 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000214933 ENTREZGENE
  ENSMUST00000265245 ENTREZGENE
  ENSMUST00000265249 ENTREZGENE
MGD MGI:5622221 ENTREZGENE
NCBI Gene Gm39336 ENTREZGENE
PhenoGen Gm39336 PhenoGen