Gm42109 (predicted gene, 42109) - Rat Genome Database

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Gene: Gm42109 (predicted gene, 42109) Mus musculus
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Symbol: Gm42109
Name: predicted gene, 42109
RGD ID: 10006261
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: Gm43448
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,722,004 - 90,732,854 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl590,701,058 - 90,736,936 (-)EnsemblGRCm39 Ensembl
GRCm38590,574,145 - 90,584,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,553,199 - 90,589,077 (-)EnsemblGRCm38mm10GRCm38
Celera588,725,571 - 88,736,450 (-)NCBICelera
Cytogenetic Map5E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm42109
658 total Variants

1 to 10 of 57 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 57 rows





RefSeq Transcripts XR_880417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000200783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,718,958 - 90,736,936 (-)Ensembl
GRCm38.p6 Ensembl590,571,099 - 90,589,077 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,701,058 - 90,736,916 (-)Ensembl
GRCm38.p6 Ensembl590,553,199 - 90,589,057 (-)Ensembl
RefSeq Acc Id: XR_880417
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,722,004 - 90,732,854 (-)NCBI
GRCm38590,574,145 - 90,584,995 (-)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000106863 Ensembl
MGD MGI:5624994 ENTREZGENE
NCBI Gene Gm42109 ENTREZGENE
PhenoGen Gm42109 PhenoGen
RNAcentral URS0000EEE3B3 RNACentral
  URS0000EEEC67 RNACentral