Gm12909 (predicted gene 12909) - Rat Genome Database

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Gene: Gm12909 (predicted gene 12909) Mus musculus
Analyze
Symbol: Gm12909
Name: predicted gene 12909
RGD ID: 10000706
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,006,495 - 62,016,482 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,006,485 - 62,020,758 (+)EnsemblGRCm39 Ensembl
GRCm38462,088,283 - 62,098,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,088,288 - 62,090,524 (+)EnsemblGRCm38mm10GRCm38
Celera460,760,561 - 60,770,756 (+)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:24316575  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:88
Interacting mature miRNAs:91
Transcripts:ENSMUST00000134190
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46014527794145424Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46014527794145424Mouse
1357443Lhyp_mlung hyperpermeability (mouse)Not determined46045401166764818Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45904725193047251Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000134190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,519 - 62,008,987 (+)Ensembl
GRCm38.p6 Ensembl462,088,288 - 62,090,524 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,485 - 62,020,755 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,495 - 62,020,758 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,495 - 62,020,756 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267772
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,491 - 62,020,752 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,020,748 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,488 - 62,016,482 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,016,482 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,015,471 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,014,864 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,513 - 62,014,864 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,485 - 62,008,993 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,008,993 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,499 - 62,008,991 (+)Ensembl
Ensembl Acc Id: ENSMUST00000267782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl462,006,485 - 62,008,299 (+)Ensembl
RefSeq Acc Id: NR_176020
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,006,495 - 62,016,482 (+)NCBI
RefSeq Acc Id: NR_176021
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,006,495 - 62,016,482 (+)NCBI
RefSeq Acc Id: NR_176022
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,006,495 - 62,016,482 (+)NCBI
RefSeq Acc Id: NR_176023
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39462,006,495 - 62,016,482 (+)NCBI
Promoters
RGD ID:15092697
Promoter ID:EPDNEWNC_M615
Type:multiple initiation site
Name:Gm12909_1
Description:predicted gene 12909 [Source:MGI Symbol;Acc:MGI:3651135]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38462,088,280 - 62,088,340EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085404 Ensembl
MGD MGI:3651135 ENTREZGENE
NCBI Gene Gm12909 ENTREZGENE
PhenoGen Gm12909 PhenoGen
RNAcentral URS00025E3423 RNACentral
  URS00025E344B RNACentral
  URS00025E356F RNACentral
  URS00025E35B0 RNACentral