Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

GENE - TERM ANNOTATION REPORT

5 Annotations Found.

An association has been curated linking Prph2 and vitelliform macular dystrophy in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Yang Z, etal., Am J Ophthalmol. 2003 Feb;135(2):213-8.
  • The annotation has been inferred from sequence orthology with PRPH2 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 2 additional annotations were made from Yang Z, etal., Am J Ophthalmol. 2003 Feb;135(2):213-8.
  • 8 RGD objects have been annotated to vitelliform macular dystrophy  (DOID:0050661)
  • 43 papers in RGD have been used to annotate Prph2
  • Curation Notes: DNA:deletion:cds:112del(human)


    • An association has been curated linking Prph2 and vitelliform macular dystrophy in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Felbor U, etal., Hum Mutat. 1997;10(4):301-9.
  • The annotation has been inferred from sequence orthology with PRPH2 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 2 additional annotations were made from Felbor U, etal., Hum Mutat. 1997;10(4):301-9.
  • 8 RGD objects have been annotated to vitelliform macular dystrophy  (DOID:0050661)
  • 43 papers in RGD have been used to annotate Prph2
  • Curation Notes: DNA:polymorphisms,haplotype:cds:p.E304Q,G338D(human)


    • An association has been curated linking Prph2 and vitelliform macular dystrophy in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD automated import pipeline for CTD gene-to-disease annotations
  • The annotation has been inferred from sequence orthology with PRPH2 (Homo sapiens) [(EXP) inferred from experiment]
  • 8 RGD objects have been annotated to vitelliform macular dystrophy  (DOID:0050661)
  • 43 papers in RGD have been used to annotate Prph2
  • Curation Notes: CTD Direct Evidence: marker/mechanism


    • An association has been curated linking Prph2 and vitelliform macular dystrophy in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Yang Z, etal., Ophthalmic Genet. 2004 Jun;25(2):133-45.
  • The annotation has been inferred from sequence orthology with PRPH2 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 5 additional annotations were made from Yang Z, etal., Ophthalmic Genet. 2004 Jun;25(2):133-45.
  • 8 RGD objects have been annotated to vitelliform macular dystrophy  (DOID:0050661)
  • 43 papers in RGD have been used to annotate Prph2
  • Curation Notes: DNA:polymorphism:cds:p.Y141C(human)


    • An association has been curated linking Prph2 and vitelliform macular dystrophy in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred from sequence orthology with PRPH2 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 8 RGD objects have been annotated to vitelliform macular dystrophy  (DOID:0050661)
  • 43 papers in RGD have been used to annotate Prph2
  • Curation Notes: ClinVar Annotator: match by term: Vitelliform macular dystrophy
  • Original References(s): PMID:25741868 PMID:28492532 PMID:32531846


    • Go Back to source page   Continue to Ontology report