Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

GENE - TERM ANNOTATION REPORT

3 Annotations Found.

An association has been curated linking HOXC5 and DNA-binding transcription factor activity, RNA polymerase II-specific in Homo sapiens.        

  • The association was inferred from sequence alignment (ISA)
    		•  
  • The annotation was made from RGD pipelines: automated import of non-rat, non-mouse GO annotations
  • The annotation has been inferred from sequence alignment with tfclass:3.1.1
  • 1362 RGD objects have been annotated to DNA-binding transcription factor activity, RNA polymerase II-specific  (GO:0000981)
  • 2 papers in RGD have been used to annotate HOXC5
  • Qualifier: enables
  • Original References(s): GO_REF:0000113


    • An association has been curated linking HOXC5 and DNA-binding transcription factor activity, RNA polymerase II-specific in Homo sapiens.        

  • The association was inferred from electronic annotation (IEA)
    		•  
  • The annotation was made from RGD pipelines: automated import of non-rat, non-mouse GO annotations
  • The annotation has been inferred from electronic annotation with InterPro:IPR017970
  • 1362 RGD objects have been annotated to DNA-binding transcription factor activity, RNA polymerase II-specific  (GO:0000981)
  • 2 papers in RGD have been used to annotate HOXC5
  • Qualifier: enables
  • Original References(s): GO_REF:0000002


    • An association has been curated linking HOXC5 and DNA-binding transcription factor activity, RNA polymerase II-specific in Homo sapiens.        

  • The association was inferred from biological aspect of ancestor (IBA)
    		•  
  • The annotation was made from RGD pipelines: automated import of non-rat, non-mouse GO annotations
  • The annotation has been inferred from biological aspect of ancestor with FB:FBgn0000014 & FB:FBgn0001077 & FB:FBgn0260642 & MGI:96186 & PANTHER:PTN002388214 & UniProtKB:P09629 & UniProtKB:P20719 & UniProtKB:P31268
  • 1362 RGD objects have been annotated to DNA-binding transcription factor activity, RNA polymerase II-specific  (GO:0000981)
  • 2 papers in RGD have been used to annotate HOXC5
  • Qualifier: enables
  • Original References(s): GO_REF:0000033


    • Go Back to source page   Continue to Ontology report