GSCAR (glioma stem cell associated long noncoding RNA) - Rat Genome Database

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Gene: GSCAR (glioma stem cell associated long noncoding RNA) Homo sapiens
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Symbol: GSCAR
Name: glioma stem cell associated long noncoding RNA
RGD ID: 151669283
HGNC Page HGNC:56879
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: glioma stem cell association long noncoding RNA; LOC124901024; uncharacterized LOC124901024
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38588,691,757 - 88,697,144 (-)NCBIGRCh38GRCh38hg38GRCh38
Cytogenetic Map5q14.3NCBI
T2T-CHM13v2.0589,172,885 - 89,178,275 (-)NCBIT2T-CHM13v2.0
JBrowse:




References
Additional References at PubMed
PMID:37063420  


Genomics

Variants

.
Variants in GSCAR
1 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
626452948GWAS2266881_Hbody mass index QTL GWAS2266881 (human)1e-22body mass index58869311788693118Human
629044732GWAS2938907_Hbody mass index QTL GWAS2938907 (human)9e-36body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)58869311788693118Human
407264448GWAS913424_Hbody mass index QTL GWAS913424 (human)1e-34body mass index58869311788693118Human
616553529GWAS1950112_Hbody weight QTL GWAS1950112 (human)3e-24body weight58869311788693118Human
597375004GWAS1471078_Hbody mass index QTL GWAS1471078 (human)1e-34body mass index58869311788693118Human
626448721GWAS2262654_Hfat pad mass QTL GWAS2262654 (human)2e-19fat pad mass58869311788693118Human
617093199GWAS2110698_Hhip circumference QTL GWAS2110698 (human)2e-22hip circumference58869311788693118Human
616556340GWAS1952923_Hbody fat percentage QTL GWAS1952923 (human)3e-22body fat percentage58869311788693118Human
626466396GWAS2280329_Hbody weight QTL GWAS2280329 (human)3e-24body weight58869311788693118Human
629027312GWAS2921487_Hbody height QTL GWAS2921487 (human)4e-23body height58869311788693118Human
617096026GWAS2113525_Hbody mass index QTL GWAS2113525 (human)1e-30body mass index58869311788693118Human
597462153GWAS1558227_Hbody mass index QTL GWAS1558227 (human)9e-36body mass index58869311788693118Human
407301584GWAS950560_Hbody mass index QTL GWAS950560 (human)1e-22body mass index58869311788693118Human
598085808GWAS1805107_Hobsolete_fat body mass QTL GWAS1805107 (human)2e-19obsolete_fat body mass58869311788693118Human
407252689GWAS901665_Hbody height QTL GWAS901665 (human)4e-23body height58869311788693118Human
616994257GWAS2011756_Hbody mass index QTL GWAS2011756 (human)9e-36body mass index58869311788693118Human
626466510GWAS2280443_Hbody mass index QTL GWAS2280443 (human)1e-30body mass index58869311788693118Human
407136606GWAS785582_Hneuroticism measurement, cognitive function measurement QTL GWAS785582 (human)4e-19neuroticism measurement, cognitive function measurement58869689888696900Human
407309019GWAS957995_Hfat body mass QTL GWAS957995 (human)2e-19fat body mass58869311788693118Human
597521727GWAS1617801_Hfat body mass QTL GWAS1617801 (human)2e-19fat body mass58869311788693118Human
617125612GWAS2143111_Hbody weight QTL GWAS2143111 (human)3e-24body weight58869311788693118Human
617048547GWAS2066046_Hbody mass index QTL GWAS2066046 (human)1e-34body mass index58869311788693118Human
407156193GWAS805169_Hbody mass index QTL GWAS805169 (human)9e-36body mass index58869311788693118Human
626465521GWAS2279454_Hbody weight QTL GWAS2279454 (human)9e-38body weight58869311788693118Human
628440671GWAS2348900_Hmajor depressive disorder QTL GWAS2348900 (human)1e-09depression-related behavior trait (VT:0015015)58869291688692917Human
629090004GWAS2984179_Hbody weight QTL GWAS2984179 (human)9e-38body mass (VT:0001259)body weight (CMO:0000012)58869311788693118Human
617021929GWAS2039428_Hbody height QTL GWAS2039428 (human)4e-23body height58869311788693118Human
626466278GWAS2280211_Hbody fat percentage QTL GWAS2280211 (human)3e-22body fat percentage58869311788693118Human
629062986GWAS2957161_Hbody weight QTL GWAS2957161 (human)3e-24body mass (VT:0001259)body weight (CMO:0000012)58869311788693118Human
597492395GWAS1588469_Hneuroticism measurement, cognitive function measurement QTL GWAS1588469 (human)4e-19neuroticism measurement, cognitive function measurement58869689888696900Human
629057990GWAS2952165_Hbody mass index QTL GWAS2952165 (human)1e-30body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)58869311788693118Human
597433823GWAS1529897_Hbody height QTL GWAS1529897 (human)4e-23body height58869311788693118Human
597517144GWAS1613218_Hbody mass index QTL GWAS1613218 (human)1e-22body mass index58869311788693118Human
597376476GWAS1472550_Hdepressive symptom measurement QTL GWAS1472550 (human)1e-09depressive symptom measurement58869291688692917Human
617031948GWAS2049447_Hfat pad mass QTL GWAS2049447 (human)2e-19fat pad mass58869311788693118Human
629037365GWAS2931540_Hfat pad mass QTL GWAS2931540 (human)2e-19fat pad mass58869311788693118Human
616962195GWAS1979694_Hdepressive symptom measurement QTL GWAS1979694 (human)1e-09major depressive disorder58869291688692917Human
617117712GWAS2135211_Hbody fat percentage QTL GWAS2135211 (human)3e-22body fat percentage58869311788693118Human
406977692GWAS626668_Hdepressive symptom measurement QTL GWAS626668 (human)1e-09unipolar depression58869291688692917Human
626445835GWAS2259768_Hbody height QTL GWAS2259768 (human)4e-23body height58869311788693118Human
617069465GWAS2086964_Hbody mass index QTL GWAS2086964 (human)1e-22body mass index58869311788693118Human
629037086GWAS2931261_Hbody mass index QTL GWAS2931261 (human)1e-22body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)58869311788693118Human
596950518GWAS1070037_Hmajor depressive disorder QTL GWAS1070037 (human)1e-09depressive symptom measurement58869291688692917Human
629037207GWAS2931382_Hbody fat percentage QTL GWAS2931382 (human)3e-22body fat mass (VT:0010482)body fat percentage (CMO:0000302)58869311788693118Human
616549971GWAS1946554_Hhip circumference QTL GWAS1946554 (human)2e-22hip circumference58869311788693118Human
598099019GWAS1816412_Hfat pad mass QTL GWAS1816412 (human)2e-19fat pad mass58869311788693118Human
598025803GWAS1745102_Hbody height QTL GWAS1745102 (human)4e-23body height58869311788693118Human
626446758GWAS2260691_Hbody mass index QTL GWAS2260691 (human)9e-36body mass index58869311788693118Human
626442023GWAS2255956_Hbody mass index QTL GWAS2255956 (human)1e-34body mass index58869311788693118Human
629037194GWAS2931369_Hhip circumference QTL GWAS2931369 (human)2e-22hip circumference58869311788693118Human
629041803GWAS2935978_Hbody mass index QTL GWAS2935978 (human)1e-34body size trait (VT:0100005)body mass index (BMI) (CMO:0000105)58869311788693118Human
616553161GWAS1949744_Hbody mass index QTL GWAS1949744 (human)1e-30body mass index58869311788693118Human
617085629GWAS2103128_Hneuroticism measurement, cognitive function measurement QTL GWAS2103128 (human)4e-19cognitive behavior trait (VT:0010450)58869689888696900Human
626467753GWAS2281686_Hhip circumference QTL GWAS2281686 (human)2e-22hip circumference58869311788693118Human


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_007058863
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38588,691,757 - 88,697,144 (-)NCBI
RefSeq Acc Id: XR_007075769
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0589,172,885 - 89,178,275 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC GSCAR COSMIC
GTEx GSCAR GTEx
HGNC ID HGNC:56879 ENTREZGENE
Human Proteome Map GSCAR Human Proteome Map
NCBI Gene LOC124901024 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-10 GSCAR  glioma stem cell associated long noncoding RNA  GSCAR  glioma stem cell association long noncoding RNA  Symbol and/or name change 19259463 PROVISIONAL
2023-08-21 GSCAR  glioma stem cell association long noncoding RNA  LOC124901024  uncharacterized LOC124901024  Symbol and/or name change 19259463 PROVISIONAL