IGHV3OR16-16 (immunoglobulin heavy variable 3/OR16-16 (pseudogene)) - Rat Genome Database

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Gene: IGHV3OR16-16 (immunoglobulin heavy variable 3/OR16-16 (pseudogene)) Homo sapiens
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Symbol: IGHV3OR16-16 (Ensembl: IGHV3OR16-15)
Name: immunoglobulin heavy variable 3/OR16-16 (pseudogene) (Ensembl:immunoglobulin heavy variable 3/OR16-15 (pseudogene))
RGD ID: 1349167
HGNC Page HGNC:5640
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: INFERRED
Previously known as: IGHV3OR1616
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381633,949,898 - 33,950,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,903,442 - 32,903,894 (+)Ensemblhg38GRCh38
GRCh371633,752,365 - 33,752,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.2NCBI
T2T-CHM13v2.01635,522,293 - 35,522,857 (-)NCBIT2T-CHM13v2.0
JBrowse:




References
Additional References at PubMed
PMID:7959766   PMID:8419161  


Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:254
Interacting mature miRNAs:273
Transcripts:ENST00000565463
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
140 730 113 174 167 238 651 189 755 49 149 1352 1036 68 140 292 560 141

Sequence


Ensembl Acc Id: ENST00000565463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,903,442 - 32,903,894 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGHV3OR16-16 COSMIC
GTEx IGHV3OR16-16 GTEx
HGNC ID HGNC:5640 ENTREZGENE
Human Proteome Map IGHV3OR16-16 Human Proteome Map
NCBI Gene 28301 ENTREZGENE
PharmGKB PA35237 PharmGKB