B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) - Rat Genome Database

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Advanced Search (OLGA)
Gene: B3gnt5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5) Rattus norvegicus
Analyze
Symbol: B3gnt5
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
RGD ID: 70955
Description: Predicted to enable lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity. Predicted to be involved in central nervous system development and protein O-linked glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GNT5 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-1,3-Gn-T5; beta-1,3-N-acetylglucosaminyltransferase 5; beta-1,3-N-acetylglucosaminyltransferase-5; beta3Gn-T5; BGnT-5; lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase; lactotriaosylceramide synthase; lc(3)Cer synthase; lc3 synthase; UDP-GlcNAc:beta-Gal beta-1,3-N-acetylglucosaminyltransferase 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,645,480 - 94,657,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,645,480 - 94,660,514 (-)EnsemblGRCr8
mRatBN7.21181,141,102 - 81,153,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,140,599 - 81,156,166 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1189,878,457 - 89,890,574 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,531,822 - 82,543,939 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,592,958 - 81,605,075 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,919,055 - 84,931,160 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,919,066 - 84,931,160 (-)Ensemblrn6Rnor6.0
Rnor_5.01187,978,737 - 87,990,865 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,396,028 - 83,408,584 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,975,786 - 79,987,947 (-)NCBICelera
RGSC_v3.11183,456,455 - 83,457,193 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-butoxyethanol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buta-1,3-diene  (ISO)
Butylbenzyl phthalate  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
fenvalerate  (EXP)
formaldehyde  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylisothiazolinone  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
toluene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IBA,IEA)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Gene Data Set MGD Curation, June 12, 2002
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Molecular cloning and characterization of UDP-GlcNAc:lactosylceramide beta 1,3-N-acetylglucosaminyltransferase (beta 3Gn-T5), an essential enzyme for the expression of HNK-1 and Lewis X epitopes on glycolipids. Togayachi A, etal., J Biol Chem 2001 Jun 22;276(25):22032-40.
Additional References at PubMed
PMID:11384981  


Genomics

Comparative Map Data
B3gnt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,645,480 - 94,657,584 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,645,480 - 94,660,514 (-)EnsemblGRCr8
mRatBN7.21181,141,102 - 81,153,206 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,140,599 - 81,156,166 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1189,878,457 - 89,890,574 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,531,822 - 82,543,939 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,592,958 - 81,605,075 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,919,055 - 84,931,160 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,919,066 - 84,931,160 (-)Ensemblrn6Rnor6.0
Rnor_5.01187,978,737 - 87,990,865 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,396,028 - 83,408,584 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,975,786 - 79,987,947 (-)NCBICelera
RGSC_v3.11183,456,455 - 83,457,193 (-)NCBI
Cytogenetic Map11q23NCBI
B3GNT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,253,253 - 183,273,385 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,249,324 - 183,298,504 (+)Ensemblhg38GRCh38
GRCh373182,971,041 - 182,991,173 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,453,726 - 184,473,873 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343184,453,746 - 184,473,880NCBI
Celera3181,406,353 - 181,426,501 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3180,376,825 - 180,396,839 (+)NCBIHuRef
CHM1_13182,934,723 - 182,954,870 (+)NCBICHM1_1
T2T-CHM13v2.03186,060,144 - 186,080,277 (+)NCBIT2T-CHM13v2.0
B3gnt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,578,943 - 19,591,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1619,578,958 - 19,591,503 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381619,760,192 - 19,772,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,760,208 - 19,772,753 (+)Ensemblmm10GRCm38
MGSCv371619,760,327 - 19,772,846 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361619,673,797 - 19,685,863 (+)NCBIMGSCv36mm8
Celera1620,328,624 - 20,341,086 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.23NCBI
B3gnt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,046,485 - 24,047,624 (-)Ensembl
ChiLan1.0NW_00495542024,029,867 - 24,061,801 (-)NCBIChiLan1.0ChiLan1.0
B3GNT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22181,119,574 - 181,143,675 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13181,124,288 - 181,148,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03180,283,491 - 180,307,583 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13188,458,434 - 188,477,816 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,474,226 - 188,475,362 (+)EnsemblpanPan2panpan1.1
B3GNT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,208,518 - 16,228,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3416,225,002 - 16,226,147 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3420,297,025 - 20,317,113 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03416,116,036 - 16,136,260 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13416,157,034 - 16,177,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03416,140,415 - 16,161,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03416,380,447 - 16,400,540 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B3gnt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,931,177 - 112,949,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936566273,714 - 274,847 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936566271,807 - 289,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13121,206,550 - 121,223,922 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113121,205,070 - 121,222,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,477,285 - 130,494,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap13q23-q41NCBI
B3GNT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,131,905 - 6,151,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl156,134,356 - 6,135,489 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606314,936,081 - 14,959,281 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,152,728 - 73,153,867 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473073,122,977 - 73,167,713 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
B3gnt5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v144,631,797 - 4,635,628 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:805
Count of miRNA genes:306
Interacting mature miRNAs:393
Transcripts:ENSRNOT00000071848
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
RH134772  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21181,141,385 - 81,141,593 (+)MAPPERmRatBN7.2
Rnor_6.01184,919,339 - 84,919,546NCBIRnor6.0
Rnor_5.01187,979,021 - 87,979,228UniSTSRnor5.0
RGSC_v3.41183,396,312 - 83,396,519UniSTSRGSC3.4
Celera1179,976,070 - 79,976,277UniSTS
RH 3.4 Map11689.5UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 61 146 90 90 59 91 59 6 328 183 11 126 62 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000071848   ⟹   ENSRNOP00000067153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,645,480 - 94,657,872 (-)Ensembl
mRatBN7.2 Ensembl1181,141,114 - 81,156,166 (-)Ensembl
Rnor_6.0 Ensembl1184,919,066 - 84,931,160 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093901   ⟹   ENSRNOP00000085318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,645,480 - 94,657,134 (-)Ensembl
mRatBN7.2 Ensembl1181,140,599 - 81,153,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103393   ⟹   ENSRNOP00000079466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,140,599 - 81,153,361 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106647   ⟹   ENSRNOP00000086439
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,646,329 - 94,660,514 (-)Ensembl
mRatBN7.2 Ensembl1181,140,599 - 81,149,930 (-)Ensembl
RefSeq Acc Id: NM_053932   ⟹   NP_446384
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,645,480 - 94,657,584 (-)NCBI
mRatBN7.21181,141,102 - 81,153,206 (-)NCBI
Rnor_6.01184,919,055 - 84,931,160 (-)NCBI
Rnor_5.01187,978,737 - 87,990,865 (-)NCBI
RGSC_v3.41183,396,028 - 83,408,584 (-)RGD
Celera1179,975,786 - 79,987,947 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446384 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB40941 (Get FASTA)   NCBI Sequence Viewer  
  EDL77982 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067153
  ENSRNOP00000067153.1
  ENSRNOP00000079466.1
  ENSRNOP00000085318.1
  ENSRNOP00000086439.1
GenBank Protein Q99NB2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446384   ⟸   NM_053932
- UniProtKB: Q99NB2 (UniProtKB/Swiss-Prot),   A6JSC5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067153   ⟸   ENSRNOT00000071848
Ensembl Acc Id: ENSRNOP00000085318   ⟸   ENSRNOT00000093901
Ensembl Acc Id: ENSRNOP00000079466   ⟸   ENSRNOT00000103393
Ensembl Acc Id: ENSRNOP00000086439   ⟸   ENSRNOT00000106647

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99NB2-F1-model_v2 AlphaFold Q99NB2 1-377 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698286
Promoter ID:EPDNEW_R8811
Type:initiation region
Name:B3gnt5_1
Description:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01184,931,244 - 84,931,304EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70955 AgrOrtholog
BioCyc Gene G2FUF-20699 BioCyc
BioCyc Pathway PWY-7839 [lacto-series glycosphingolipids biosynthesis] BioCyc
  PWY-7841 [neolacto-series glycosphingolipids biosynthesis] BioCyc
BioCyc Pathway Image PWY-7839 BioCyc
  PWY-7841 BioCyc
Ensembl Genes ENSRNOG00000046258 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000071848 ENTREZGENE
  ENSRNOT00000071848.3 UniProtKB/Swiss-Prot
  ENSRNOT00000093901.1 UniProtKB/Swiss-Prot
  ENSRNOT00000103393.1 UniProtKB/Swiss-Prot
  ENSRNOT00000106647.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.550.50 UniProtKB/Swiss-Prot
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot
KEGG Report rno:116740 UniProtKB/Swiss-Prot
NCBI Gene 116740 ENTREZGENE
PANTHER LACTOSYLCERAMIDE 1,3-N-ACETYL-BETA-D-GLUCOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot
  PTHR11214 UniProtKB/Swiss-Prot
Pfam Galactosyl_T UniProtKB/Swiss-Prot
PhenoGen B3gnt5 PhenoGen
RatGTEx ENSRNOG00000046258 RatGTEx
UniProt A6JSC5 ENTREZGENE, UniProtKB/TrEMBL
  B3GN5_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-07-09 B3gnt5  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in fetal/neonatal rat cerebral cortex with a peak around embryonic day 19 decreasing through postnatal day 14, and in fetal cerebellum in a biphasic manner with peaks on days E19 and P8 70806
gene_expression not expressed in the adult cerebral cortex, but comparatively high expression in adult cerebellum 70806
gene_regulation n HL-60 cells, expression is up-regulated by retinoic acid and down-regulated by 12-O-tetradecanoylphorbol-13-acetate 70806