Pdzk1 (PDZ domain containing 1) - Rat Genome Database

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Gene: Pdzk1 (PDZ domain containing 1) Rattus norvegicus
Analyze
Symbol: Pdzk1
Name: PDZ domain containing 1
RGD ID: 70924
Description: Enables scavenger receptor binding activity. Predicted to be involved in several processes, including carnitine transmembrane transport; positive regulation of protein targeting to membrane; and protein localization to plasma membrane. Predicted to act upstream of or within in utero embryonic development. Located in apical plasma membrane and microvillus membrane. Orthologous to several human genes including PDZK1 (PDZ domain containing 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-terminal linking and modulating protein; C-terminal-linking and modulating protein; Clamp; dietary Pi-regulated RNA-1; diphor-1; na(+)/H(+) exchange regulatory cofactor NHE-RF3; na(+)/H(+) exchanger regulatory factor 3; na/Pi cotransporter C-terminal-associated protein 1; naPi-Cap1; NHERF-3; PDZ domain-containing protein 1; sodium-hydrogen exchanger regulatory factor 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,064,995 - 187,096,348 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2187,065,013 - 187,096,806 (+)EnsemblGRCr8
mRatBN7.22184,376,161 - 184,407,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,376,161 - 184,407,514 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2192,046,710 - 192,077,941 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,846,505 - 189,877,666 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,679,274 - 184,710,509 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,965,685 - 198,999,323 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)Ensemblrn6Rnor6.0
Rnor_5.02218,452,670 - 218,484,881 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42191,643,593 - 191,675,995 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2176,900,642 - 176,931,947 (+)NCBICelera
RGSC_v3.12191,606,346 - 191,638,749 (+)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,3,4,4,5,5,6,6,7,7,8,8,9,9,10,10,10-heptadecafluoro-1-decanol  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nonylphenol  (ISO)
4-octylphenol  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
ciglitazone  (ISO)
clofibric acid  (EXP)
Clofop  (ISO)
clomiphene  (ISO)
cocaine  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
deoxynivalenol  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dimethyl sulfoxide  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
estriol  (ISO)
estrone  (ISO)
flurbiprofen  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gefitinib  (ISO)
genistein  (ISO)
glafenine  (EXP)
GW 501516  (ISO)
hexestrol  (ISO)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
isotretinoin  (ISO)
menadione  (ISO)
mestranol  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Muraglitazar  (EXP)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
tamoxifen  (ISO)
Tesaglitazar  (EXP)
Tetrachlorobisphenol A  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
urethane  (ISO)
valproic acid  (ISO)
wortmannin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Interactions between CAP70 and actinfilin are important for integrity of actin cytoskeleton structures in neurons. Chen Y and Li M, Neuropharmacology. 2005 Dec;49(7):1026-41. Epub 2005 Jul 28.
2. Identification of a new gene product (diphor-1) regulated by dietary phosphate. Custer M, etal., Am J Physiol 1997 Nov;273(5 Pt 2):F801-6.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. NHE3 regulatory factor 1 (NHERF1) modulates intestinal sodium-dependent phosphate transporter (NaPi-2b) expression in apical microvilli. Giral H, etal., J Biol Chem. 2012 Oct 12;287(42):35047-56. doi: 10.1074/jbc.M112.392415. Epub 2012 Aug 17.
5. Identification of a PDZ-domain-containing protein that interacts with the scavenger receptor class B type I. Ikemoto M, etal., Proc Natl Acad Sci U S A 2000 Jun 6;97(12):6538-43.
6. Gene Data Set MGD Curation, June 12, 2002
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Analysis of different complexes of type IIa sodium-dependent phosphate transporter in rat renal cortex using blue-native polyacrylamide gel electrophoresis. Tanimura A, etal., J Med Invest. 2011 Feb;58(1-2):140-7.
Additional References at PubMed
PMID:9461128   PMID:15489334   PMID:15523054   PMID:15994332   PMID:16141316   PMID:16236806   PMID:16738539   PMID:17990980   PMID:19056867   PMID:23376485   PMID:27996060   PMID:29752999  
PMID:37696999  


Genomics

Comparative Map Data
Pdzk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,064,995 - 187,096,348 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2187,065,013 - 187,096,806 (+)EnsemblGRCr8
mRatBN7.22184,376,161 - 184,407,514 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,376,161 - 184,407,514 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2192,046,710 - 192,077,941 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,846,505 - 189,877,666 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,679,274 - 184,710,509 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,965,685 - 198,999,323 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)Ensemblrn6Rnor6.0
Rnor_5.02218,452,670 - 218,484,881 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42191,643,593 - 191,675,995 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2176,900,642 - 176,931,947 (+)NCBICelera
RGSC_v3.12191,606,346 - 191,638,749 (+)NCBI
Cytogenetic Map2q34NCBI
PDZK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,670,852 - 145,707,400 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,670,848 - 145,708,148 (-)Ensemblhg38GRCh38
GRCh371145,727,666 - 145,764,207 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,439,083 - 144,475,430 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341143,216,769 - 143,253,117NCBI
Celera1119,930,736 - 119,957,156 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,691,465 - 119,728,015 (+)NCBIHuRef
CHM1_11147,038,978 - 147,075,526 (-)NCBICHM1_1
T2T-CHM13v2.01144,787,642 - 144,824,930 (-)NCBIT2T-CHM13v2.0
Pdzk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,736,772 - 96,778,242 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,736,600 - 96,778,242 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38396,829,456 - 96,870,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,829,284 - 96,870,926 (+)Ensemblmm10GRCm38
MGSCv37396,633,988 - 96,674,849 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36396,915,531 - 96,956,331 (+)NCBIMGSCv36mm8
Celera398,239,046 - 98,278,106 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map342.0NCBI
Pdzk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568386,904 - 436,346 (+)Ensembl
ChiLan1.0NW_004955568405,697 - 436,346 (+)NCBIChiLan1.0ChiLan1.0
PDZK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,060,229 - 103,125,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,647,669 - 102,708,517 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,034,097 - 122,091,823 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,579,273 - 113,615,526 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,579,273 - 113,615,390 (-)EnsemblpanPan2panpan1.1
PDZK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,496,977 - 58,536,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,964,905 - 58,005,087 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01759,493,230 - 59,533,453 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,493,651 - 59,532,902 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,366,239 - 58,406,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,427,299 - 58,467,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,153,604 - 59,193,832 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdzk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,550,890 - 20,577,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936867426,648 - 439,512 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDZK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,625,080 - 99,657,161 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1499,625,085 - 99,657,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,286,291 - 109,324,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDZK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12013,026,422 - 13,076,094 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2013,040,475 - 13,079,241 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603815,720,272 - 15,756,120 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdzk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,022,967 - 17,057,447 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477217,023,837 - 17,057,160 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pdzk1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1360,441,236 - 60,472,295 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pdzk1
188 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:185
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000000107
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2184856304229856304Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2184856304229856304Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2184856304229856304Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2182024327227024327Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2184482291229482291Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2182635347227635347Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2184856304229856304Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat

Markers in Region
RH134273  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22184,401,617 - 184,401,811 (+)MAPPERmRatBN7.2
Rnor_6.02198,993,427 - 198,993,620NCBIRnor6.0
Rnor_5.02218,478,985 - 218,479,178UniSTSRnor5.0
RGSC_v3.42191,670,099 - 191,670,292UniSTSRGSC3.4
Celera2176,926,070 - 176,926,263UniSTS
RH 3.4 Map21245.6UniSTS
Cytogenetic Map2q34UniSTS
BF387011  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22184,394,675 - 184,394,839 (+)MAPPERmRatBN7.2
Rnor_6.02198,986,223 - 198,986,386NCBIRnor6.0
Rnor_5.02218,471,781 - 218,471,944UniSTSRnor5.0
RGSC_v3.42191,662,708 - 191,662,871UniSTSRGSC3.4
Celera2176,919,129 - 176,919,292UniSTS
RH 3.4 Map21245.6UniSTS
Cytogenetic Map2q34UniSTS
AI267131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22184,405,507 - 184,406,048 (+)MAPPERmRatBN7.2
Rnor_6.02198,997,317 - 198,997,857NCBIRnor6.0
Rnor_5.02218,482,875 - 218,483,415UniSTSRnor5.0
RGSC_v3.42191,673,989 - 191,674,529UniSTSRGSC3.4
Celera2176,929,940 - 176,930,481UniSTS
Cytogenetic Map2q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 58 120 91 90 59 82 59 6 336 172 11 99 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000107   ⟹   ENSRNOP00000000107
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2187,065,013 - 187,096,806 (+)Ensembl
mRatBN7.2 Ensembl2184,376,161 - 184,407,514 (+)Ensembl
Rnor_6.0 Ensembl2198,965,685 - 198,999,323 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091578   ⟹   ENSRNOP00000074757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2198,965,711 - 198,999,318 (+)Ensembl
RefSeq Acc Id: NM_031712   ⟹   NP_113900
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82187,064,995 - 187,096,348 (+)NCBI
mRatBN7.22184,376,161 - 184,407,514 (+)NCBI
Rnor_6.02198,965,685 - 198,999,323 (+)NCBI
Rnor_5.02218,452,670 - 218,484,881 (+)NCBI
RGSC_v3.42191,643,593 - 191,675,995 (+)RGD
Celera2176,900,642 - 176,931,947 (+)RGD
Sequence:
RefSeq Acc Id: NP_113900   ⟸   NM_031712
- UniProtKB: Q6AZ21 (UniProtKB/Swiss-Prot),   O35234 (UniProtKB/Swiss-Prot),   Q9JJ40 (UniProtKB/Swiss-Prot),   A6K399 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000107   ⟸   ENSRNOT00000000107
Ensembl Acc Id: ENSRNOP00000074757   ⟸   ENSRNOT00000091578
Protein Domains
PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJ40-F1-model_v2 AlphaFold Q9JJ40 1-523 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691591
Promoter ID:EPDNEW_R2115
Type:initiation region
Name:Pdzk1_1
Description:PDZ domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02198,965,703 - 198,965,763EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:70924 AgrOrtholog
BioCyc Gene G2FUF-51957 BioCyc
Ensembl Genes ENSRNOG00000000096 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000000107 ENTREZGENE
  ENSRNOT00000000107.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7109724 IMAGE-MGC_LOAD
InterPro NHER UniProtKB/Swiss-Prot
  PDZ UniProtKB/Swiss-Prot
  PDZ_sf UniProtKB/Swiss-Prot
KEGG Report rno:65144 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93341 IMAGE-MGC_LOAD
NCBI Gene 65144 ENTREZGENE
PANTHER NA(+)_H(+) EXCHANGE REGULATORY COFACTOR NHE-RF3-RELATED UniProtKB/Swiss-Prot
  PDZ DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam PDZ UniProtKB/Swiss-Prot
PhenoGen Pdzk1 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000096 RatGTEx
SMART PDZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot
UniProt A6K399 ENTREZGENE, UniProtKB/TrEMBL
  NHRF3_RAT UniProtKB/Swiss-Prot
  O35234 ENTREZGENE
  Q6AZ21 ENTREZGENE
  Q9JJ40 ENTREZGENE
UniProt Secondary O35234 UniProtKB/Swiss-Prot
  Q6AZ21 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-07-09 Pdzk1  PDZ domain containing 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference