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Gene: Srcin1 (SRC kinase signaling inhibitor 1) Rattus norvegicus

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Symbol:

Srcin1

Name:

SRC kinase signaling inhibitor 1

RGD ID:

708439

Description:

Enables protein domain specific binding activity. Involved in several processes, including behavioral response to cocaine; conditioned place preference; and positive regulation of dendritic spine morphogenesis. Located in several cellular components, including filopodium; lamellipodium; and postsynaptic density. Is active in postsynapse and presynapse. Used to study cocaine dependence. Orthologous to human SRCIN1 (SRC kinase signaling inhibitor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

p130Cas-associated protein; P140; p140Cap; SNAP25-interacting protein; Snip

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SRCIN1 (SRC kinase signaling inhibitor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Srcin1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Srcin1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SRCIN1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SRCIN1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Srcin1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SRCIN1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SRCIN1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Srcin1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Srcin1 (SRC kinase signaling inhibitor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Srcin1 (SRC kinase signaling inhibitor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SRCIN1 (SRC kinase signaling inhibitor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-278a6.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y71H2AM.15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	Y71H2AM.15	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32809	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32809	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	srcin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	srcin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,999,295 - 83,066,359 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	82,991,033 - 83,067,419 (-)	Ensembl				GRCr8
mRatBN7.2	10	82,502,911 - 82,569,882 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	82,504,393 - 82,571,040 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	87,450,806 - 87,517,832 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,948,895 - 87,015,919 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	82,341,448 - 82,408,479 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	85,460,059 - 85,517,671 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	85,460,059 - 85,517,683 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	85,248,782 - 85,306,191 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	86,263,255 - 86,320,681 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	81,269,056 - 81,325,146 (-)	NCBI		Celera
RGSC_v3.1	10	86,277,624 - 86,335,044 (-)	NCBI
Cytogenetic Map	10	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cocaine dependence (IMP,ISO)

Cocaine-Related Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

buta-1,3-diene (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

clobetasol (ISO)

cocaine (ISO)

dimethylselenide (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lead(0) (ISO)

lithium atom (EXP)

lithium hydride (EXP)

mercury dibromide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

orphenadrine (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

propanal (ISO)

reactive oxygen species (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sinapic acid (ISO)

sodium arsenite (ISO)

tanespimycin (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

behavioral response to cocaine (IEP)

conditioned place preference (IMP)

exocytosis (IEA)

negative regulation of cell adhesion (ISO)

negative regulation of protein secretion (IMP)

negative regulation of protein tyrosine kinase activity (ISO,ISS)

positive regulation of dendritic spine morphogenesis (IDA)

positive regulation of protein tyrosine kinase activity (ISO,ISS)

postsynaptic actin cytoskeleton organization (ISO)

regulation of cell migration (ISO,ISS)

regulation of dendritic spine morphogenesis (IBA,ISO,ISS)

regulation of synapse assembly (ISO)

substrate adhesion-dependent cell spreading (ISO,ISS)

Cellular Component

actin cytoskeleton (IBA,IDA,ISO)

axon (IDA,IEA)

cytoplasm (IBA,IEA,ISO,ISS)

cytoskeleton (IEA)

dendrite (IDA,IEA)

filopodium (IDA)

focal adhesion (ISO)

glutamatergic synapse (ISO)

lamellipodium (IDA)

neuron to neuron synapse (IDA)

neuronal cell body (IDA)

postsynapse (IDA,IEA)

postsynaptic density (IBA,IDA,IEA,ISO)

presynapse (IDA,IEA,ISO)

synapse (IDA)

Molecular Function

protein binding (IPI,ISO)

protein domain specific binding (IDA)

protein kinase binding (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Synaptic Microtubule-Associated Protein EB3 and SRC Phosphorylation Mediate Structural and Behavioral Adaptations During Withdrawal From Cocaine Self-Administration.	Calipari ES, etal., J Neurosci. 2019 Jul 17;39(29):5634-5646. doi: 10.1523/JNEUROSCI.0024-19.2019. Epub 2019 May 15.
2.	SNIP, a novel SNAP-25-interacting protein implicated in regulated exocytosis.	Chin LS, etal., J Biol Chem 2000 Jan 14;275(2):1191-200.
3.	Histone arginine methylation in cocaine action in the nucleus accumbens.	Damez-Werno DM, etal., Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9623-8. doi: 10.1073/pnas.1605045113. Epub 2016 Aug 9.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Characterization of a multidomain adaptor protein, p140Cap, as part of a pre-synaptic complex.	Ito H, etal., J Neurochem. 2008 Oct;107(1):61-72. doi: 10.1111/j.1471-4159.2008.05585.x. Epub 2008 Jul 24.
6.	Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity.	Jaworski J, etal., Neuron. 2009 Jan 15;61(1):85-100. doi: 10.1016/j.neuron.2008.11.013.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14657239	PMID:14681019	PMID:17114649	PMID:17525734	PMID:21700703	PMID:21725361	PMID:22871113	PMID:23325552	PMID:24453341	PMID:28641114	PMID:29476059	PMID:30053369
PMID:30315850

Genomics

Comparative Map Data

Srcin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,999,295 - 83,066,359 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	82,991,033 - 83,067,419 (-)	Ensembl				GRCr8
mRatBN7.2	10	82,502,911 - 82,569,882 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	82,504,393 - 82,571,040 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	87,450,806 - 87,517,832 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,948,895 - 87,015,919 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	82,341,448 - 82,408,479 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	85,460,059 - 85,517,671 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	85,460,059 - 85,517,683 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	85,248,782 - 85,306,191 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	86,263,255 - 86,320,681 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	81,269,056 - 81,325,146 (-)	NCBI		Celera
RGSC_v3.1	10	86,277,624 - 86,335,044 (-)	NCBI
Cytogenetic Map	10	q31	NCBI

SRCIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	38,530,031 - 38,607,025 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	38,530,031 - 38,605,952 (-)	Ensembl			hg38	GRCh38
GRCh37	17	36,686,266 - 36,762,205 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	33,939,785 - 34,015,709 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	33,347,180 - 33,423,105 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	32,482,606 - 32,558,515 (-)	NCBI		HuRef
CHM1_1	17	36,921,587 - 36,997,493 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	39,393,085 - 39,470,208 (-)	NCBI		T2T-CHM13v2.0

Srcin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	97,400,166 - 97,466,059 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	97,400,166 - 97,467,012 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	97,509,340 - 97,575,246 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	97,509,340 - 97,576,186 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	97,370,654 - 97,436,440 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	97,327,759 - 97,391,216 (-)	NCBI		MGSCv36	mm8
Celera	11	107,161,827 - 107,228,200 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	61.0	NCBI

Srcin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,676,667 - 13,731,936 (-)	Ensembl
ChiLan1.0	NW_004955451	13,673,613 - 13,734,639 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRCIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	26,343,010 - 26,418,881 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	28,226,559 - 28,302,458 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	18,666,094 - 18,742,015 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	18,942,084 - 19,015,753 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	18,942,084 - 19,015,744 (+)	Ensembl			panPan2	panpan1.1

SRCIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	23,597,561 - 23,667,846 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	23,597,734 - 23,667,851 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	23,068,049 - 23,137,611 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	24,393,637 - 24,463,203 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	24,394,360 - 24,461,549 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	23,164,781 - 23,234,322 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	23,425,852 - 23,495,385 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	23,552,336 - 23,621,944 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Srcin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	23,035,921 - 23,096,728 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	13,977,011 - 14,039,109 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	13,977,342 - 14,039,155 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRCIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	23,495,669 - 23,570,762 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	23,494,487 - 23,571,560 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	63,358,407 - 63,430,801 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRCIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	67,585,505 - 67,662,865 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	67,587,582 - 67,659,599 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	38,612,714 - 38,688,431 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Srcin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	4,031,748 - 4,085,984 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624795	4,031,596 - 4,088,999 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Srcin1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	56,810,422 - 56,872,647 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Srcin1
446 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	261
Count of miRNA genes:	159
Interacting mature miRNAs:	191
Transcripts:	ENSRNOT00000016070
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	81012077	91729860	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	83061236	92869129	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95464802	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
724516	Uae17	Urinary albumin excretion QTL 17	3.6		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	78707585	85720738	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	73695339	83061459	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	73695339	83061459	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
2325836	Bp346	Blood pressure QTL 346		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	84503487	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73950209	83959619	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Mgh5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	83,061,236 - 83,061,459 (+)	Marker Load Pipeline
mRatBN7.2	10	82,564,856 - 82,565,079 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	85,513,822 - 85,514,044	NCBI	Rnor6.0
Rnor_5.0	10	85,302,342 - 85,302,564	UniSTS	Rnor5.0
RGSC_v3.4	10	86,316,831 - 86,317,054	RGD	RGSC3.4
RGSC_v3.4	10	86,316,832 - 86,317,054	UniSTS	RGSC3.4
Celera	10	81,321,296 - 81,321,518	UniSTS
RGSC_v3.1	10	86,331,202 - 86,331,424	RGD
RH 3.4 Map	10	793.19	UniSTS
RH 3.4 Map	10	793.19	RGD
RH 2.0 Map	10	954.1	RGD
Cytogenetic Map	10	q31	UniSTS

D10Rat144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	83,035,172 - 83,035,320 (+)	Marker Load Pipeline
mRatBN7.2	10	82,538,790 - 82,538,938 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	85,487,741 - 85,487,900	NCBI	Rnor6.0
Rnor_5.0	10	85,276,455 - 85,276,614	UniSTS	Rnor5.0
RGSC_v3.4	10	86,290,714 - 86,290,861	UniSTS	RGSC3.4
RGSC_v3.4	10	86,290,650 - 86,291,123	RGD	RGSC3.4
Celera	10	81,295,669 - 81,295,816	UniSTS
RGSC_v3.1	10	86,305,084 - 86,305,231	RGD
RH 3.4 Map	10	792.9	RGD
RH 3.4 Map	10	792.9	UniSTS
RH 2.0 Map	10	936.3	RGD
SHRSP x BN Map	10	60.89	RGD
Cytogenetic Map	10	q31	UniSTS

D10Mco32

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	82,563,058 - 82,563,249 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	85,512,024 - 85,512,214	NCBI	Rnor6.0
Rnor_5.0	10	85,300,544 - 85,300,734	UniSTS	Rnor5.0
RGSC_v3.4	10	86,315,034 - 86,315,224	UniSTS	RGSC3.4
RGSC_v3.4	10	86,315,033 - 86,315,224	RGD	RGSC3.4
Celera	10	81,319,498 - 81,319,688	UniSTS
RGSC_v3.1	10	86,329,403 - 86,329,594	RGD
Cytogenetic Map	10	q31	UniSTS

D10Mco33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	82,565,800 - 82,565,989 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	85,514,766 - 85,514,954	NCBI	Rnor6.0
Rnor_5.0	10	85,303,286 - 85,303,474	UniSTS	Rnor5.0
RGSC_v3.4	10	86,317,776 - 86,317,964	UniSTS	RGSC3.4
Celera	10	81,322,240 - 81,322,428	UniSTS
Cytogenetic Map	10	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	67	165	77	76	45	92	45	6	340	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001393740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_019378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF156981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF156982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016070 ⟹ ENSRNOP00000016070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	83,008,702 - 83,067,419 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,513,205 - 82,570,112 (-)	Ensembl
Rnor_6.0 Ensembl	10	85,460,059 - 85,517,683 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095707 ⟹ ENSRNOP00000090918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,066,417 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,504,393 - 82,570,112 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099263 ⟹ ENSRNOP00000080321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,065,086 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,504,393 - 82,571,040 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108672 ⟹ ENSRNOP00000083677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,066,262 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,506,485 - 82,571,040 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109362 ⟹ ENSRNOP00000095793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,065,086 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,504,393 - 82,568,699 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112987 ⟹ ENSRNOP00000097620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,991,033 - 83,065,086 (-)	Ensembl
mRatBN7.2 Ensembl	10	82,506,485 - 82,571,040 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121767 ⟹ ENSRNOP00000102162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,065,086 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127145 ⟹ ENSRNOP00000104199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,038,439 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153078 ⟹ ENSRNOP00000099638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,065,252 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166888 ⟹ ENSRNOP00000105332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	82,999,295 - 83,065,086 (-)	Ensembl

RefSeq Acc Id:

NM_001393740 ⟹ NP_001380669

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,066,262 (-)	NCBI
mRatBN7.2	10	82,502,911 - 82,569,882 (-)	NCBI

RefSeq Acc Id:

NM_001393741 ⟹ NP_001380670

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,086 (-)	NCBI
mRatBN7.2	10	82,502,911 - 82,568,706 (-)	NCBI

RefSeq Acc Id:

NM_019378 ⟹ NP_062251

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	83,006,588 - 83,065,086 (-)	NCBI
mRatBN7.2	10	82,510,205 - 82,568,706 (-)	NCBI
Rnor_6.0	10	85,460,059 - 85,517,671 (-)	NCBI
Rnor_5.0	10	85,248,782 - 85,306,191 (-)	NCBI
RGSC_v3.4	10	86,263,255 - 86,320,681 (-)	RGD
Celera	10	81,269,056 - 81,325,146 (-)	RGD

Sequence:

show sequence

GGGTGTAATGCAGGAGAGAAGGCTTGCTCTGGGAAGGCATCTGCTGGTTTGCTTGATCTGAGTT
AAAATGAAACAAAGGCTTGGTGTTGCCATGCCGGCGCGCCCCCAGCCCCACGCCTCCCCATGCA
GCCCTGGCAGTGCCTCCGGCGCTTTGCCCTGGCCTGGTGGGAGAGGACCGCCGAGGGTCGCGCC
CGTTCTCCCAGGGAGGAGGTTGGACCGAGGGACCCTGGGGGCCGAGGGGAGCCAGATCCGGAGC
GGAGCAGCCCCCCCATGCTGTCTGCCGACGATGCCGAATATCCTCGGGAGTACCGGACCCTGGG
GGGTGGGGGCAGCGGGGGCAGCGGGGGCCGGCGCTTCTCCAACGTGGGGCTGGTGCACACCTCC
GAGCGGCGGCACACGGTGATCGCTGCCCAGAGCCTGGAGGCCCTCAGCGGGCTCCAGAAGGCCG
ATGCTGACCGCAAGCGAGATGCGTTTATGGACCACCTGAAGAGCAAGTACCCCCAGCATGCCCT
GGCCCTTCGAGGTCAGCAGGACAGGATGAGAGAGCAGCAACCAAACTACTGGAGTTTCAAGACC
CGCAGCTCGCGCCATACTCAGGGAGCCCAGCCAGGGCTGGCAGACCAGGCAGCCAAGCTGTCCT
ACGCCTCGGCTGAGTCGCTGGAGACAATGTCCGAGGCCGAGCTGCCCCTGGGCTTCAGCAGGAT
GAATCGCTTCCGACAGAGCTTGCCTCTCTCCCGCTCTGCCAGCCAGACCAAGCTGCGCTCACCA
GGAGTCCTGTTCCTGCAGTTCGGGGAGGAGACGCGACGTGTACACATCACGCATGAGGTCAGCA
GCCTGGACACGCTGCACGCACTCATCGCGCACATGTTCCCGCAGAAGCTCACCATGGGCATGCT
TAAGTCGCCCAACACCGCCATCCTCATCAAGGACGAGGCTCGCAACGTCTTCTACGAGCTGGAA
GACGTCCGGGATATCCAGGACCGGAGTATCATCAAGATCTATAGGAAGGAGCCACTGTATGCCG
CTTTTCCTGGCTCGCACCTCACCAACGGTGACCTCCGGAGAGAGATGGTTTACGCATCGCGGGA
GTCGTCGCCCACGCGGCGCCTCAACAACCTGTCGCCCGCATCGCACCTAGCATCTAGCTCCCCG
CCTCCAGGGCTGCCATCCGGGCTGCCTTCGGGACTGCCATCGGGCTCGCCCTCGCGTTCACGCC
TCTCGTATGCTGGGGGCCGGCCGCCCTCTTACGCCGGCAGCCCGGTACACCACGCGGCTGAGCG
ACTGGGAGGCGCCCCGACCAGCCAGGGCGTGAGCCCCAGCCCCAGCGCCATCCTGGAGCGGCGC
GACGTGAAGCCAGATGAGGATCTGGCGGGCAAGGCGGGCGGCATGGTGCTGGTGAAGGGCGAGG
GCCTCTATGCCGATCCCTACGGGCTGCTGCACGAGGGCCGCTTGAGCCTGGCCGCCGCAGCAGG
AGACCCGTTCGCATACCCGGGCGCGGGCGGCTTGTACAAGCGGGGTTCTGTGCGCTCGCTCAGC
ACCTACTCGGCCGCTGCGCTGCAGTCCGACCTGGAGGACTCGCTGTACAAGGCGGGCGCCGGCG
GCCCGCTCTACGGAGACGGCTATGGCTTCCGTCTGCCGCCTTCGTCCCCGCAGAAACTAGCCGA
CGTCTCAGCGCCCTCCGGGGGACCTCCGCCACCGCACAGCCCCTACTCTGGGCCGCCCAGCCGC
GGCTCGCCGGTGCGCCAGTCGTTCCGTAAAGATTCTGGTTCCTCGTCGGTCTTTGCTGAGAGTC
CTGGAGGCAAAGCCCGCAGCACCGGGGCTTCCACGGCCGGAGCACCACCTTCTGAACTCTTCCC
TGGACCTGGAGAGCGCTCCCTCGTAGGGTTCGGGCCGCCGGTGCCAGCCAAGGACACAGAGACC
AGGGAGCGTATGGAGGCCATGGAGAAGCAGATTGCCAGCCTCACTGGGCTAGTACAGAGTGCTT
TACTGCGAGGCTCGGAGCCGGAGACCCCAAGTGAGAAGATTGAAGGCTCCAATGGAGCAGCCAC
CCCCTCAGCACCAGTGTGTGGGTCAGGCAGTAGGAGTAGCGGGGCCACTCCAGTGTCGGGCCCT
CCCCCACCCGCGGTCAGCAGCACCCCTGCAGGGCAGCCCACTGCTGTCAGCCGGCTGCAAATGC
AGATGCATCTGCGTGGCCTACAGAACAGCGCTAGCGACCTGCGTGGCCAGCTTCAGCAGTTGCG
GAAGCTCCAGCTCCAGAACCAGGAGTCGGTGCGCGCGCTGCTGAAGCGCACCGAGGCGGAGCTG
AGCATGCGCGTGTCGGAGGCGGCGCGGCGGCAGGAGGACCCGCTGCAGCGGCAGCGCACCCTGG
TGGAAGAGGAGCGTTTGCGTTACCTCAACGACGAGGAGCTCATTACACAGCAGCTCAATGACCT
GGAGAAGTCAGTGGAGAAGATCCAGAGGGATGTGGCCCATAACCACCGGCTGGTGCCTGGTCCT
GAGTTGGAAGAGAAGGCTCTGGTGCTGAAACAGCTTGGGGAGACGCTGACGGAACTCAAGGCTC
ATTTCCCAGGCCTGCAGAGTAAGATGCGGGTAGTGCTGCGTGTAGAGGTGGAGGCAGTCAAGTT
TCTGAAGGAGGAACCTCAACGCCTCGACGGGCTTCTCAAGCGCTGCCGGGTGGTCACTGACACG
CTGGCCCAGATCCGAAGGCAAGTGGATGAGGGTGTGTGGCCTCCCCCCAACAATCTCCTGAACC
AGTCCCCCAAGAAGGTGGCAGCCGAAACAGACTTCAGCAAAGGCCTGGATTTTGAGATACCACC
CCCGAGTCCTCCACTGAATCTCCACGAGCTGAGCGGGCCTGCGGAAGGCACCCCGCTTACCCCA
AAAAGCGGCAACCCTACCAAAGGCCTGGATGCTCCGAGCAAGAGAAACATGGACAAAGCTGTGT
CTGTCGAGGCTGCAGAGAGAGACTGGGAAGAGAAGCGGGCCGCCCTGACCCAGTACAGCGCCAA
GGACATCAACCGGCTGCTGGAGGAAACCCAAGCTGAGCTGCTCAAGGCTATCCCCGACCTGGAC
TGTGCCAGCAAGACCCACCCAGGCCCTACTCCCACTCCAGACCACAAGCCCCCTAAGGCACCCC
ATGGTCAGAAGGCTGCTCCCCGGACAGAGCCCAGTGGGAGAAGAGGATCAGATGAGCTCACAGT
GCCCCGATACCGCACAGAGAAGCCCTCCAAGTCGCCCCCGCCACCCCCTCCCCGCCGGAGCTTC
CCTTCCTCGCACGGCCTGACCACCACTCGCACCGGAGAAGTGGTGGTCACCAGTAAGAAAGACT
CAGTCTTCATCAAGAAGGCTGAATCTGAGGAGCTGGAGATCCAGAAGCCTCAGGTGAAGCTGCG
TCGCGCTGTGTCTGAGGTGGTCCGCCCCGCGTCCACACCGCCCATTATGGCCTCGGCCATCAAG
GATGAAGACGATGAGGAACGCATCATTGCTGAGCTGGAGAGTGGTGGTGGCAGTGTGCCACCCA
TGAAGGTGGTGACTCCCGGAGCCTCTCGGCTGAAGGCGGCCCAGGGTCCAGCAGGCAGCCCTGA
TAAAGGCAAACACGGCAAGCAACGAACGGAATACATGAGGATCCAGGCCCAGCAGCAGGTGAGG
GTGGGATACCAGGCACCCAGGCCCCTGGAGGGCTGTACACCAAGGCTCTGCTATATGCCGCTGT
CTTAAGATAGTTCTGATCTTCTGATTCCCTCCATTTCTTTCCTCATCGCGGGCCTAGTGCTTTG
GATCTGGTATATAGACACGAGTCTCTGGACTCACAGCCAGTCTCCTGCTCAGCGTTAGAGGAGC
CTCACCCCCTTCCTTGCACAGGGCCTGTCCCTATACAGATTCACTTCCTGCCCCAGTGGTTGGG
TCCCTTCTAAAGCCTGCCACACAGCCATCTTACCTCTGCCCCTGTGCAGCGCCCCCCCCCCCCC
CCCCGCTTTGCACAGTTTTTTCAACTCTCAGTTCAGGAAGAAGCTTTCAGCAGGCACATTTCGG
TGACGGGTCGGGGCGCACAGCCTACAACGCCCATCCGGTGTGCTCAGAATCCCGCAGACGTAAC
AACCCGCTTGGATTTGTAGGTTTGGAGTTGACAGAATTCACCCATGCTACTTAGAGCCCTGGAG
CCTGCTCGTGAGATCTGCCGGGTCAGAGTAAAGGAGGGCCCTGGTGGTAACAGCTATTGAGAGC
CCCTCAGTGCTCATGCTCAGTTCAAAACCTCTCCTGAGGAGCTCTTAGTGCCAGGCCCGCTTGG
GGTCCCAGGTAGGCCTTGTTCTGTCCAGATAGAAATCCAAAGTTCTGGCGTATAAGGCTAGGGA
TGGCCCGGGATGGCCATGAGGGTCAGCTCATAGCAGGAGAGAGACTCCCCAGTCCTGTAGAGCG
AATGACGTTAGAGCTAAGACGGAGACTTAGCTTCCTTAAAACCCCTTCCACCGTAGGCCACAGA
TAGCCCTGGGCAAGACCTTGTCTACTTTCTGGCTGCTAGGGAGACAAGCATTCAATTGCCCCCC
AGCTTTTCTTCCTCAGCCCCCACTTGTTCGTGGTCCCCAGACTCACCCAGTGAGACCCATTCCC
CCAGTTCTTTTCTGTGACTGAAATGGGTAAGGACTTCTTGTCTGGGATGCTGGTGGTGGGGGTC
CCCTCATTTCACGCCCAGAAAACCAGCTGATAGCCAATGGGGTATTTACTCGTGTCAGGCACAT
CCGGTGCCTGTTTCACAGCAGTCTGAGGTAGAACAGGTGAAGAGGCTGAGATGGGATGGGAATC
TGACACCTGACAGACCTCTATCATGCATATGTCTGCTTCTGCCCAGGCAGGACCCCTTCCTATC

hide sequence

RefSeq Acc Id:

XM_063269707 ⟹ XP_063125777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269708 ⟹ XP_063125778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,193 (-)	NCBI

RefSeq Acc Id:

XM_063269709 ⟹ XP_063125779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269710 ⟹ XP_063125780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269711 ⟹ XP_063125781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269712 ⟹ XP_063125782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269713 ⟹ XP_063125783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269714 ⟹ XP_063125784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,192 (-)	NCBI

RefSeq Acc Id:

XM_063269715 ⟹ XP_063125785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,038,656 (-)	NCBI

RefSeq Acc Id:

XM_063269716 ⟹ XP_063125786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,193 (-)	NCBI

RefSeq Acc Id:

XM_063269717 ⟹ XP_063125787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,038,656 (-)	NCBI

RefSeq Acc Id:

XM_063269718 ⟹ XP_063125788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,038,655 (-)	NCBI

RefSeq Acc Id:

XM_063269719 ⟹ XP_063125789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,066,359 (-)	NCBI

RefSeq Acc Id:

XM_063269720 ⟹ XP_063125790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,066,359 (-)	NCBI

RefSeq Acc Id:

XM_063269721 ⟹ XP_063125791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,039,124 (-)	NCBI

RefSeq Acc Id:

XM_063269722 ⟹ XP_063125792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,190 (-)	NCBI

RefSeq Acc Id:

XM_063269723 ⟹ XP_063125793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,190 (-)	NCBI

RefSeq Acc Id:

XM_063269724 ⟹ XP_063125794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,031 (-)	NCBI

RefSeq Acc Id:

XM_063269725 ⟹ XP_063125795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,032 (-)	NCBI

RefSeq Acc Id:

XM_063269726 ⟹ XP_063125796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,189 (-)	NCBI

RefSeq Acc Id:

XM_063269727 ⟹ XP_063125797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,189 (-)	NCBI

RefSeq Acc Id:

XM_063269728 ⟹ XP_063125798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	83,010,117 - 83,065,191 (-)	NCBI

RefSeq Acc Id:

XM_063269729 ⟹ XP_063125799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,189 (-)	NCBI

RefSeq Acc Id:

XM_063269730 ⟹ XP_063125800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,190 (-)	NCBI

RefSeq Acc Id:

XM_063269731 ⟹ XP_063125801

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,065,188 (-)	NCBI

RefSeq Acc Id:

XM_063269732 ⟹ XP_063125802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,031 (-)	NCBI

RefSeq Acc Id:

XM_063269734 ⟹ XP_063125804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,031 (-)	NCBI

RefSeq Acc Id:

XM_063269735 ⟹ XP_063125805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,031 (-)	NCBI

RefSeq Acc Id:

XM_063269736 ⟹ XP_063125806

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,999,295 - 83,030,031 (-)	NCBI

RefSeq Acc Id:

XR_010055230

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	83,010,123 - 83,065,191 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380669	(Get FASTA)	NCBI Sequence Viewer
	NP_001380670	(Get FASTA)	NCBI Sequence Viewer
	NP_062251	(Get FASTA)	NCBI Sequence Viewer
	XP_063125777	(Get FASTA)	NCBI Sequence Viewer
	XP_063125778	(Get FASTA)	NCBI Sequence Viewer
	XP_063125779	(Get FASTA)	NCBI Sequence Viewer
	XP_063125780	(Get FASTA)	NCBI Sequence Viewer
	XP_063125781	(Get FASTA)	NCBI Sequence Viewer
	XP_063125782	(Get FASTA)	NCBI Sequence Viewer
	XP_063125783	(Get FASTA)	NCBI Sequence Viewer
	XP_063125784	(Get FASTA)	NCBI Sequence Viewer
	XP_063125785	(Get FASTA)	NCBI Sequence Viewer
	XP_063125786	(Get FASTA)	NCBI Sequence Viewer
	XP_063125787	(Get FASTA)	NCBI Sequence Viewer
	XP_063125788	(Get FASTA)	NCBI Sequence Viewer
	XP_063125789	(Get FASTA)	NCBI Sequence Viewer
	XP_063125790	(Get FASTA)	NCBI Sequence Viewer
	XP_063125791	(Get FASTA)	NCBI Sequence Viewer
	XP_063125792	(Get FASTA)	NCBI Sequence Viewer
	XP_063125793	(Get FASTA)	NCBI Sequence Viewer
	XP_063125794	(Get FASTA)	NCBI Sequence Viewer
	XP_063125795	(Get FASTA)	NCBI Sequence Viewer
	XP_063125796	(Get FASTA)	NCBI Sequence Viewer
	XP_063125797	(Get FASTA)	NCBI Sequence Viewer
	XP_063125798	(Get FASTA)	NCBI Sequence Viewer
	XP_063125799	(Get FASTA)	NCBI Sequence Viewer
	XP_063125800	(Get FASTA)	NCBI Sequence Viewer
	XP_063125801	(Get FASTA)	NCBI Sequence Viewer
	XP_063125802	(Get FASTA)	NCBI Sequence Viewer
	XP_063125804	(Get FASTA)	NCBI Sequence Viewer
	XP_063125805	(Get FASTA)	NCBI Sequence Viewer
	XP_063125806	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF25003	(Get FASTA)	NCBI Sequence Viewer
	AAF25004	(Get FASTA)	NCBI Sequence Viewer
	EDM05860	(Get FASTA)	NCBI Sequence Viewer
	EDM05861	(Get FASTA)	NCBI Sequence Viewer
	EDM05862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016070
	ENSRNOP00000080321
	ENSRNOP00000083677
	ENSRNOP00000095793
	ENSRNOP00000099638
	ENSRNOP00000102162
	ENSRNOP00000104199
	ENSRNOP00000105332
GenBank Protein	Q9QXY2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062251 ⟸ NM_019378
- Peptide Label:	isoform 2
- UniProtKB:	Q9QXY3 (UniProtKB/Swiss-Prot), Q9QXY2 (UniProtKB/Swiss-Prot), A6HIK6 (UniProtKB/TrEMBL), A0A8I6AEP4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPWQCLRRFALAWWERTAEGRARSPREEVGPRDPGGRGEPDPERSSPPMLSADDAEYPREYRT LGGGGSGGSGGRRFSNVGLVHTSERRHTVIAAQSLEALSGLQKADADRKRDAFMDHLKSKYPQH ALALRGQQDRMREQQPNYWSFKTRSSRHTQGAQPGLADQAAKLSYASAESLETMSEAELPLGFS RMNRFRQSLPLSRSASQTKLRSPGVLFLQFGEETRRVHITHEVSSLDTLHALIAHMFPQKLTMG MLKSPNTAILIKDEARNVFYELEDVRDIQDRSIIKIYRKEPLYAAFPGSHLTNGDLRREMVYAS RESSPTRRLNNLSPASHLASSSPPPGLPSGLPSGLPSGSPSRSRLSYAGGRPPSYAGSPVHHAA ERLGGAPTSQGVSPSPSAILERRDVKPDEDLAGKAGGMVLVKGEGLYADPYGLLHEGRLSLAAA AGDPFAYPGAGGLYKRGSVRSLSTYSAAALQSDLEDSLYKAGAGGPLYGDGYGFRLPPSSPQKL ADVSAPSGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKARSTGASTAGAPPSEL FPGPGERSLVGFGPPVPAKDTETRERMEAMEKQIASLTGLVQSALLRGSEPETPSEKIEGSNGA ATPSAPVCGSGSRSSGATPVSGPPPPAVSSTPAGQPTAVSRLQMQMHLRGLQNSASDLRGQLQQ LRKLQLQNQESVRALLKRTEAELSMRVSEAARRQEDPLQRQRTLVEEERLRYLNDEELITQQLN DLEKSVEKIQRDVAHNHRLVPGPELEEKALVLKQLGETLTELKAHFPGLQSKMRVVLRVEVEAV KFLKEEPQRLDGLLKRCRVVTDTLAQIRRQVDEGVWPPPNNLLNQSPKKVAAETDFSKGLDFEI PPPSPPLNLHELSGPAEGTPLTPKSGNPTKGLDAPSKRNMDKAVSVEAAERDWEEKRAALTQYS AKDINRLLEETQAELLKAIPDLDCASKTHPGPTPTPDHKPPKAPHGQKAAPRTEPSGRRGSDEL TVPRYRTEKPSKSPPPPPPRRSFPSSHGLTTTRTGEVVVTSKKDSVFIKKAESEELEIQKPQVK LRRAVSEVVRPASTPPIMASAIKDEDDEERIIAELESGGGSVPPMKVVTPGASRLKAAQGPAGS PDKGKHGKQRTEYMRIQAQQQVRVGYQAPRPLEGCTPRLCYMPLS hide sequence

Ensembl Acc Id:

ENSRNOP00000016070 ⟸ ENSRNOT00000016070

Ensembl Acc Id:

ENSRNOP00000097620 ⟸ ENSRNOT00000112987

Ensembl Acc Id:

ENSRNOP00000083677 ⟸ ENSRNOT00000108672

Ensembl Acc Id:

ENSRNOP00000090918 ⟸ ENSRNOT00000095707

Ensembl Acc Id:

ENSRNOP00000095793 ⟸ ENSRNOT00000109362

Ensembl Acc Id:

ENSRNOP00000080321 ⟸ ENSRNOT00000099263

RefSeq Acc Id:	NP_001380669 ⟸ NM_001393740
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380670 ⟸ NM_001393741
- Peptide Label:	isoform 3
- UniProtKB:	A6HIK5 (UniProtKB/TrEMBL), A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125789 ⟸ XM_063269719
- Peptide Label:	isoform X13
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125790 ⟸ XM_063269720
- Peptide Label:	isoform X14
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125778 ⟸ XM_063269708
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125786 ⟸ XM_063269716
- Peptide Label:	isoform X10
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125781 ⟸ XM_063269711
- Peptide Label:	isoform X5
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125784 ⟸ XM_063269714
- Peptide Label:	isoform X8
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125782 ⟸ XM_063269712
- Peptide Label:	isoform X6
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125779 ⟸ XM_063269709
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125780 ⟸ XM_063269710
- Peptide Label:	isoform X4
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125783 ⟸ XM_063269713
- Peptide Label:	isoform X7
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125777 ⟸ XM_063269707
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125793 ⟸ XM_063269723
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125800 ⟸ XM_063269730
- Peptide Label:	isoform X24
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125792 ⟸ XM_063269722
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125799 ⟸ XM_063269729
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125797 ⟸ XM_063269727
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125796 ⟸ XM_063269726
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125801 ⟸ XM_063269731
- Peptide Label:	isoform X25
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125791 ⟸ XM_063269721
- Peptide Label:	isoform X15
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125787 ⟸ XM_063269717
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZQE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125785 ⟸ XM_063269715
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZQE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125788 ⟸ XM_063269718
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5ZQE0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125795 ⟸ XM_063269725
- Peptide Label:	isoform X19
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125806 ⟸ XM_063269736
- Peptide Label:	isoform X29
- UniProtKB:	A0A8I6AKG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125804 ⟸ XM_063269734
- Peptide Label:	isoform X27
- UniProtKB:	A0A8I6AKG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125805 ⟸ XM_063269735
- Peptide Label:	isoform X28
- UniProtKB:	A0A8I6AKG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125802 ⟸ XM_063269732
- Peptide Label:	isoform X26
- UniProtKB:	A0A8I6AKG9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125794 ⟸ XM_063269724
- Peptide Label:	isoform X18
- UniProtKB:	A0A8L2Q7U5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125798 ⟸ XM_063269728
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I6AEP4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104199 ⟸ ENSRNOT00000127145

Ensembl Acc Id:

ENSRNOP00000099638 ⟸ ENSRNOT00000153078

Ensembl Acc Id:

ENSRNOP00000105332 ⟸ ENSRNOT00000166888

Ensembl Acc Id:

ENSRNOP00000102162 ⟸ ENSRNOT00000121767

Protein Domains

Actin interacting protein 3-like C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QXY2-F1-model_v2	AlphaFold	Q9QXY2	1-1197	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708439	AgrOrtholog
BioCyc Gene	G2FUF-23420	BioCyc
Ensembl Genes	ENSRNOG00000011475	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000016070	ENTREZGENE
	ENSRNOT00000099263	ENTREZGENE
	ENSRNOT00000108672	ENTREZGENE
	ENSRNOT00000109362	ENTREZGENE
	ENSRNOT00000121767	ENTREZGENE
	ENSRNOT00000127145	ENTREZGENE
	ENSRNOT00000153078	ENTREZGENE
	ENSRNOT00000166888	ENTREZGENE
Gene3D-CATH	Actin interacting protein 3, C-terminal domain	UniProtKB/Swiss-Prot
InterPro	AIP3_C	UniProtKB/Swiss-Prot
	SRCIN1	UniProtKB/Swiss-Prot
KEGG Report	rno:56029	UniProtKB/Swiss-Prot
NCBI Gene	56029	ENTREZGENE
PANTHER	P140CAP/SNIP-RELATED	UniProtKB/Swiss-Prot
	PTHR22741:SF5	UniProtKB/Swiss-Prot
Pfam	AIP3	UniProtKB/Swiss-Prot
PhenoGen	Srcin1	PhenoGen
RatGTEx	ENSRNOG00000011475	RatGTEx
UniProt	A0A8I5ZQE0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXP7_RAT	UniProtKB/TrEMBL
	A0A8I6AEP4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKG9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATB3_RAT	UniProtKB/TrEMBL
	A0A8L2Q7U5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L5Z7_RAT	UniProtKB/TrEMBL
	A0ABK0LBK2_RAT	UniProtKB/TrEMBL
	A0ABK0LET3_RAT	UniProtKB/TrEMBL
	A0ABK0LIJ4_RAT	UniProtKB/TrEMBL
	A6HIK5	ENTREZGENE, UniProtKB/TrEMBL
	A6HIK6	ENTREZGENE, UniProtKB/TrEMBL
	Q9QXY2	ENTREZGENE
	Q9QXY3	ENTREZGENE
	SNIP_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q9QXY3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-01	Srcin1	SRC kinase signaling inhibitor 1	Snip	SNAP25-interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-30	Snip				Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD