Advanced Search (OLGA)

Gene: Atrn (attractin) Rattus norvegicus

Analyze

Symbol:

Atrn

Name:

attractin

RGD ID:

69063

Description:

Predicted to enable Notch binding activity and signaling receptor activity. Involved in pigmentation and response to oxidative stress. Predicted to be located in extracellular space. Orthologous to human ATRN (attractin); PARTICIPATES IN melanocortin system pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

membrane attractin; protein zitter

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATRN (attractin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atrn (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atrn (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATRN (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATRN (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATRN (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATRN (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atrn (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Atrn (attractin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ATRN (attractin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATRN (attractin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atrn (attractin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atrn (attractin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atrn (attractin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atrn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dsd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dsd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atrn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atrn	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Allele / Splice:

Atrn^zi ; Atrn^mv

Is Marker For:

Strains: SER/Kyo ; ZIMY/Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)22Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)41Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)104Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)3Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)20Kyo ; W-Tg(RNB1-116K03-EGFP-mRFP)21Kyo

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,563,271 - 138,697,360 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,563,312 - 138,697,360 (+)	Ensembl				GRCr8
mRatBN7.2	3	118,110,320 - 118,244,326 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,110,229 - 118,244,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	122,004,507 - 122,138,654 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,602,558 - 130,736,641 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,260,615 - 128,394,765 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,434,409 - 123,567,922 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,434,409 - 123,567,918 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,934,303 - 130,067,267 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,539,268 - 118,701,177 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	116,920,666 - 117,054,199 (+)	NCBI		Celera
RGSC_v3.1	3	118,444,840 - 118,606,746 (+)	NCBI
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Experimental Liver Cirrhosis (ISO)

Nerve Degeneration (ISO)

obesity (ISO)

Tremor (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

4,4'-diaminodiphenylmethane (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

asbestos (ISO)

atrazine (EXP)

benzene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

coumarin (EXP,ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dibutyl phthalate (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

lactacystin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

menadione (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (EXP)

N-nitrosodimethylamine (EXP)

nefazodone (EXP)

nickel sulfate (ISO)

nicotine (ISO)

nimesulide (EXP)

nitrates (ISO)

ozone (ISO)

p-toluidine (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (EXP,ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

trovafloxacin (EXP)

tungsten (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebellum development (ISO)

inflammatory response (IEA)

myelination (ISO)

pigmentation (IEA,IMP,ISO)

regulation of multicellular organism growth (ISO)

response to oxidative stress (IMP)

Cellular Component

extracellular region (IEA)

extracellular space (IEA,ISO,ISS)

plasma membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

Notch binding (IBA)

protein binding (ISO)

signaling receptor activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

melanocortin system pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

brain vacuoles (IAGP)

darkened coat color (IAGP)

tremors (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Melanocortin receptors and their accessory proteins.	Cooray SN and Clark AJ, Mol Cell Endocrinol. 2011 Jan 15;331(2):215-21. Epub 2010 Jul 21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Insertional mutation of the Attractin gene in the black tremor hamster.	Kuramoto T, etal., Mamm Genome 2002 Jan;13(1):36-40.
5.	Attractin/mahogany/zitter plays a critical role in myelination of the central nervous system.	Kuramoto T, etal., Proc Natl Acad Sci U S A 2001 Jan 16;98(2):559-64.
6.	The myelin vacuolation (mv) rat with a null mutation in the attractin gene.	Kuwamura M, etal., Lab Invest 2002 Oct;82(10):1279-86.
7.	Zhonghua nan ke xue = National journal of andrology	Liu J and Xiong C, Zhonghua Nan Ke Xue. 2004 Jul;10(7):515-7, 520.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Pivotal role of attractin in cell survival under oxidative stress in the zitter rat brain with genetic spongiform encephalopathy.	Muto Y and Sato K, Brain Res Mol Brain Res 2003 Mar 17;111(1-2):111-22.
10.	The mahogany protein is a receptor involved in suppression of obesity.	Nagle DL, etal., Nature 1999 Mar 11;398(6723):148-52.
11.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
12.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
14.	Comprehensive gene review and curation	RGD comprehensive gene curation
15.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:11137996	PMID:15682487	PMID:16502470	PMID:17261078	PMID:18064672	PMID:18206135	PMID:18302151	PMID:19056867	PMID:19931230	PMID:23376485	PMID:23533145	PMID:36621889

Genomics

Comparative Map Data

Atrn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	138,563,271 - 138,697,360 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	138,563,312 - 138,697,360 (+)	Ensembl				GRCr8
mRatBN7.2	3	118,110,320 - 118,244,326 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	118,110,229 - 118,244,322 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	122,004,507 - 122,138,654 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	130,602,558 - 130,736,641 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	128,260,615 - 128,394,765 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	123,434,409 - 123,567,922 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	123,434,409 - 123,567,918 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	129,934,303 - 130,067,267 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	118,539,268 - 118,701,177 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	116,920,666 - 117,054,199 (+)	NCBI		Celera
RGSC_v3.1	3	118,444,840 - 118,606,746 (+)	NCBI
Cytogenetic Map	3	q36	NCBI

ATRN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	3,471,018 - 3,651,118 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	3,471,018 - 3,651,118 (+)	Ensembl			hg38	GRCh38
GRCh37	20	3,451,665 - 3,631,765 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	3,399,676 - 3,579,765 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	3,399,675 - 3,544,704	NCBI
Celera	20	3,513,657 - 3,693,655 (+)	NCBI		Celera
Cytogenetic Map	20	p13	NCBI
HuRef	20	3,399,541 - 3,580,108 (+)	NCBI		HuRef
CHM1_1	20	3,451,974 - 3,632,086 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	3,501,888 - 3,682,059 (+)	NCBI		T2T-CHM13v2.0

Atrn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	130,734,363 - 130,872,249 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	130,748,415 - 130,872,253 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	130,906,430 - 131,030,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	130,906,495 - 131,030,333 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	130,732,232 - 130,856,065 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	130,597,937 - 130,721,770 (+)	NCBI		MGSCv36	mm8
Celera	2	132,131,227 - 132,255,065 (+)	NCBI		Celera
Cytogenetic Map	2	F1	NCBI
cM Map	2	63.26	NCBI

Atrn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	14,340,403 - 14,506,024 (+)	Ensembl
ChiLan1.0	NW_004955415	14,341,635 - 14,505,955 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATRN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	4,437,480 - 4,614,437 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	4,434,306 - 4,611,266 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	3,556,445 - 3,733,322 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	3,315,241 - 3,490,901 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	3,315,278 - 3,486,628 (+)	Ensembl			panPan2	panpan1.1

ATRN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	17,698,238 - 17,859,810 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	17,702,282 - 17,859,737 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	17,528,104 - 17,688,488 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	18,117,068 - 18,278,292 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	18,118,872 - 18,278,215 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	17,766,353 - 17,872,211 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	17,823,557 - 17,984,479 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	18,150,655 - 18,311,906 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

ATRN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	32,054,249 - 32,239,519 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	32,054,240 - 32,239,576 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	36,381,687 - 36,516,383 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATRN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	34,157,240 - 34,335,902 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	34,157,293 - 34,335,923 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	10,118,786 - 10,244,152 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atrn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	4,559,121 - 4,745,996 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	4,559,149 - 4,745,840 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atrn
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	110,634,515 - 110,759,295 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Atrn
1305 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	590
Count of miRNA genes:	270
Interacting mature miRNAs:	365
Transcripts:	ENSRNOT00000028847
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	136091420	155634702	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Markers in Region

D3Rat160

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	138,688,338 - 138,688,463 (+)	Marker Load Pipeline
mRatBN7.2	3	118,235,304 - 118,235,429 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,558,901 - 123,559,025	NCBI	Rnor6.0
Rnor_5.0	3	130,058,246 - 130,058,370	UniSTS	Rnor5.0
RGSC_v3.4	3	118,692,156 - 118,692,280	UniSTS	RGSC3.4
RGSC_v3.4	3	118,692,155 - 118,692,280	RGD	RGSC3.4
Celera	3	117,045,178 - 117,045,302	UniSTS
RGSC_v3.1	3	118,597,433 - 118,597,950	RGD
RH 2.0 Map	3	689.5	RGD
SHRSP x BN Map	3	57.4399	RGD
Cytogenetic Map	3	q36	UniSTS

RH131001

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,243,899 - 118,244,086 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,567,496 - 123,567,682	NCBI	Rnor6.0
Rnor_5.0	3	130,066,841 - 130,067,027	UniSTS	Rnor5.0
RGSC_v3.4	3	118,700,751 - 118,700,937	UniSTS	RGSC3.4
Celera	3	117,053,773 - 117,053,959	UniSTS
RH 3.4 Map	3	1013.0	UniSTS
Cytogenetic Map	3	q36	UniSTS

RH131613

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,190,135 - 118,190,320 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,513,347 - 123,513,531	NCBI	Rnor6.0
Rnor_5.0	3	130,013,468 - 130,013,652	UniSTS	Rnor5.0
RGSC_v3.4	3	118,646,591 - 118,646,775	UniSTS	RGSC3.4
Celera	3	116,999,898 - 117,000,082	UniSTS
RH 3.4 Map	3	1019.5	UniSTS
Cytogenetic Map	3	q36	UniSTS

BF392025

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,205,695 - 118,205,800 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,528,839 - 123,528,943	NCBI	Rnor6.0
Rnor_5.0	3	130,028,329 - 130,028,433	UniSTS	Rnor5.0
RGSC_v3.4	3	118,662,114 - 118,662,218	UniSTS	RGSC3.4
Celera	3	117,015,515 - 117,015,619	UniSTS
RH 3.4 Map	3	1019.5	UniSTS
Cytogenetic Map	3	q36	UniSTS

PMC14626P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,180,561 - 118,180,696 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,503,772 - 123,503,906	NCBI	Rnor6.0
Rnor_5.0	3	130,003,893 - 130,004,027	UniSTS	Rnor5.0
RGSC_v3.4	3	118,637,016 - 118,637,150	UniSTS	RGSC3.4
Celera	3	116,990,349 - 116,990,483	UniSTS
Cytogenetic Map	3	q36	UniSTS

AI101364

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	118,213,888 - 118,213,981 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	123,537,024 - 123,537,116	NCBI	Rnor6.0
Rnor_5.0	3	130,036,514 - 130,036,606	UniSTS	Rnor5.0
RGSC_v3.4	3	118,670,299 - 118,670,391	UniSTS	RGSC3.4
Celera	3	117,023,696 - 117,023,788	UniSTS
RH 3.4 Map	3	1019.5	UniSTS
Cytogenetic Map	3	q36	UniSTS

Related Rat Strains

The following Strains have been annotated to Atrn

SER/Kyo W-Tg(RNB1-116K03-EGFP-mRFP)104Kyo W-Tg(RNB1-116K03-EGFP-mRFP)20Kyo W-Tg(RNB1-116K03-EGFP-mRFP)21Kyo W-Tg(RNB1-116K03-EGFP-mRFP)22Kyo W-Tg(RNB1-116K03-EGFP-mRFP)3Kyo W-Tg(RNB1-116K03-EGFP-mRFP)41Kyo ZIMY/Kyo

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB038387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB038388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB049248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028847 ⟹ ENSRNOP00000028847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,563,312 - 138,697,355 (+)	Ensembl
mRatBN7.2 Ensembl	3	118,110,229 - 118,244,322 (+)	Ensembl
Rnor_6.0 Ensembl	3	123,434,409 - 123,567,918 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104219 ⟹ ENSRNOP00000097783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	138,563,439 - 138,697,360 (+)	Ensembl
mRatBN7.2 Ensembl	3	118,110,380 - 118,244,322 (+)	Ensembl

RefSeq Acc Id:

NM_031351 ⟹ NP_112641

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,563,379 - 138,697,360 (+)	NCBI
mRatBN7.2	3	118,110,320 - 118,244,326 (+)	NCBI
Rnor_6.0	3	123,434,409 - 123,567,922 (+)	NCBI
Rnor_5.0	3	129,934,303 - 130,067,267 (+)	NCBI
RGSC_v3.4	3	118,539,268 - 118,701,177 (+)	RGD
Celera	3	116,920,666 - 117,054,199 (+)	RGD

Sequence:

show sequence

AGGGTAGCCGGCGTGCGGGGTGTGTATGTGTTCGCTGGGCGCCGGCTCAGCCCCAGGAAGATGG
TGGCGGCGGCGGCGGCGGCGGAGGCGACTGAGGCGCGGTTGAGGGGGTACACGACGGCGACAGC
AGCGCCCGCGGGCTGGAAGGAGAGGCAGCACCGACCCTGCGCCGCGACAGGGGCCTGGAGGCCG
TGGCCGCGCGCCGGGCTGTGTCTCCCGCGGGTGCTGTCGCGGGCGCTATCCCCGCCGCCGCTGC
TGCCGCTGCTGCCGCTGCTCTTTTCGCTATTGCTGCTGCCACTGCCCCGGGAGGCCGAGGCCGC
TGCGGTGGCGGCGGCTGTGTCAGGCTCGGCCGCAGCTGAGGCCAAGGAATGTGACCGGCCGTGT
GTCAACGGCGGCCGCTGCAACCCTGGCACCGGCCAGTGCGTCTGCCCCACGGGCTGGGTGGGCG
AGCAATGCCAGCACTGCGGGGGCCGCTTCAGACTAACTGGATCTTCTGGATTTGTAACAGATGG
ACCTGGGAATTATAAATATAAAACGAAATGCACATGGCTCATTGAAGGACAGCCAAATAAGATA
ATGAGACTTCGATTCAACCATTTTGCTACTGAATGTAGCTGGGACCATTTATATGTTTATGATG
GGGACTCAATTTACGCACCTCTGATTGCTGCCTTTAGTGGCCTCATTGTTCCTGAAAGAGATGG
CAATGAGACGGCCCCTGAAGTCACTGTCACTTCAGGTTATGCACTACTGCATTTTTTCAGTGAT
GCTGCTTATAATCTGACTGGATTTAATATCACTTACAATTTTGACATGTGCCCGAATAATTGCT
CAGGCCGAGGAGAATGTAAGAGCAGTAACAGCAGCAGCACTGTTGAGTGTGAATGTTCTGAAAA
CTGGAAAGGGGAGTCCTGTGACATTCCTCACTGTACAGACAACTGTGGCTTTCCTCACCGAGGC
ATCTGTAACGCAAGTGACACCAGAGGGTGCTCCTGCTTCCCTCACTGGCAGGGTCCTGGATGTT
CAATTCCTGTGCCAGCTAACCAGTCTTTTTGGACTCGAGAAGAATATTCTGACTTAAAGCTTCC
CAGAGCCTCTCATAAAGCTGTGGTCAATGGAAATATAATGTGGGTTGTTGGCGGGTATATGTTC
AACCATTCAGATTACAGCATGGTTTTAGCGTATGACCTGGCTTCTAGGGAATGGCTTTCACTAA
ACCATTCTGTGAACAGTGTGGTTGTAAGATATGGTCATTCTTTGGCATTACATAAGGATAAAAT
CTACATGTATGGAGGAAAAATTGATTCAACAGGGAATGTGACCAACGAGCTGAGAGTATTTCAT
ATTCATAATGAATCATGGGTATTGTTAACCCCCAAAGCTAAGGATCAGTATGCAGTGGTTGGAC
ACTCAGCACACATTGTTACACTGTCATCTGGCCGTGTGGTCATGTTGGTCATCTTCGGTCATTG
TCCGCTCTACGGATATATAAGTGTTGTGCAGGAATATGACTTGGAAAAGAACACATGGAGTATA
TTACAAACTCAAGGTGCTCTAGTGCAAGGGGGTTATGGCCACAGCAGTGTTTATGATCACAGGA
CCAAGGCTCTGTATGTTCATGGTGGCTACAAGGCTTTCAGCGCCAACAAGTACCGGCTTGCAGA
TGACCTCTACAGATACCATGTGGACACTCAGATGTGGACCATTCTTAAGGACAGCCGATTTTTC
CGTTACTTGCATACAGCTGTGATAGTGAGTGGAACCATGCTGGTGTTCGGAGGGAACACACACA
ATGACACTTCCATGAGCCACGGTGCCAAATGCTTCTCCTCAGACTTCATGGCTTATGACATTGC
TTGTGACCGATGGTCAGTTCTCCCCAGACCTGAGCTCCATCACGATGTCAACCGATTTGGCCAC
TCAGCAGTCTTGCACAACAGCACCATGTATGTGTTCGGCGGCTTCAACAGCCTCCTCCTCAGTG
ACGTCTTAGTCTTCACCTCGGAGCAGTGTGATGCACACCGCAGCGAAGCTGCTTGTGTGGCAGC
AGGACCTGGCATCCGGTGTCTGTGGGACACACAGTCGTCTCGATGTACCTCCTGGGAGTTGGCA
ACTGAAGAACAAGCAGAAAAGTTAAAATCAGAATGTTTCTCTAAAAGAACCCTTGACCATGACA
GATGTGACCAGCACACAGATTGTTACAGCTGCACAGCCAATACCAATGACTGCCACTGGTGCAA
TGATCACTGTGTCCCTGTGAACCACAGCTGCACAGAAGGCCAGATCTCCATTGCCAAGTATGAC
AATTGCCCCAAGGATAACCCCATGTACTACTGCAATAAGAAAACCAGCTGCAGGAGCTGTGCCC
TAGATCAGAATTGCCAGTGGGAACCTCGAAATCAAGAGTGCATCGCCCTGCCCGAAAACATCTG
TGGCATTGGCTGGCATTTGGTCGGAAACTCGTGTCTGAAAATCACTACTGCTAAGGAAAATTAT
GACAATGCTAAATTGTCCTGTAGAAACCACAATGCCTTTTTGGCTTCGCTTACGTCCCAGAAGA
AGGTGGAGTTTGTCCTTAAGCAGCTTCGATTAATGCAATCATCTCAGAGCACGTCCAAGCTCAC
TCTGACTCCATGGGTTGGTCTTCGGAAGATCAATGTATCTTACTGGTGCTGGGAGGATATGTCT
CCATTCACAAATAGTTTGCTGCAGTGGATGCCATCTGAGCCCAGTGATGCCGGCTTCTGTGGGA
TCTTGTCAGAGCCTAGTACTCGGGGACTGAAGGCTGCAACCTGCATCAACCCACTCAATGGAAG
TGTTTGTGAAAGGCCTGCAAACCACAGTGCCAAGCAGTGCCGGACACCCTGTGCCCTGCGGACA
GCATGTGGTGAGTGCACCAGCAGCAGCTCCGAATGCATGTGGTGCAGCAACATGAAGCAGTGCG
TAGACTCCAATGCCTACGTAGCCTCCTTTCCTTTCGGCCAGTGTATGGAGTGGTATACAATGAG
CAGCTGCCCACCTGAAAATTGCTCTGGCTACTGTACCTGCAGCCATTGCTTGGAGCAGCCAGGC
TGTGGTTGGTGTACTGATCCTAGCAATACTGGGAAAGGCAAATGTATTGAGGGAAGCTATAAAG
GACCCGTGAAGATGCCTTCACATGCCTCTACAGGAAATGTGTACCCACAGCCCCTTCTGAACTC
CAGCATGTGTCTAGAGGACAGCAGATACAACTGGTCTTTTATTCACTGTCCAGCTTGCCAGTGC
AATGGACACAGCAAGTGCATCAACCAGAGCATCTGTGAGAAGTGTGAGGACCTGACCACAGGCA
AGCACTGCGAGACCTGCATATCTGGCTTCTATGGTGACCCGACTAATGGAGGCAAATGTCAGCC
ATGCAAGTGCAACGGGCACGCATCACTGTGCAACACCAACACTGGCAAGTGCTTCTGTACCACC
AAGGGCGTCAAGGGAGAGGAGTGCCAGCTATGTGAGGTAGAAAATCGATACCAGGGAAACCCTC
TCAAAGGAACATGTTACTATACCCTTCTCATTGACTATCAGTTCACTTTTAGCCTGTCCCAGGA
AGACGACCGCTATTACACAGCCATCAATTTTGTGGCTACTCCTGATGAACAAAACAGGGATTTG
GACATGTTCATCAATGCCTCCAAAAACTTCAACCTCAACATCACCTGGGCCACCAGTTTCCCAG
CTGGAACCCAGACTGGAGAAGAGGTGCCTGTTGTTTCAAAAACCAACATCAAGGAATACAAAGA
TAGCTTCTCTAATGAGAAATTTGATTTTCGCAACCATCCAAACATTACTTTCTTTGTTTATGTC
AGTAATTTCACTTGGCCCATCAAAATTCAAATTGCCTTCTCCCAGCACAGCAATTTTATGGACC
TGGTGCAGTTCTTCGTGACTTTCTTCAGCTGTTTCCTCTCTCTGCTTCTGGTGGCGGCAGTGGT
CTGGAAGATCAAGCAGAGCTGTTGGGCATCCAGGAGGAGAGAGCAACTTCTTCGGGAGATGCAA
CAGATGGCCAGCCGCCCTTTTGCTTCTGTAAATGTTGCCTTGGAAACAGATGAAGAACCTCCTG
ATCTCATTGGGGGAAGTATAAAGACTGTTCCTAAGCCCATTGCCCTGGAGCCCTGCTTTGGTAA
CAAAGCTGCTGTCCTCTCTGTGTTTGTGAGGCTCCCTCGAGGACTGGGAGGAATCCCTCCTCCT
GGTCAGTCAGGTCTTGCTGTGGCCAGTGCCCTGGTGGACATTTCTCAGCAGATGCCAATAGTGT
ACAAGGAGAAGTCAGGAGCTGTAAGGAACCGGAAGCAGCAGCCCCCTGCACAGCCTGGAACCTG
CATTTGATACTGGGGCAGGAACTCTCCCTCACAGAGGGGCATGTGGTCCACTAAGCTGTCTACA
GGGGAGGCTGCAGGCAGGAAGCTGGTGTGGGGCAGAAGACTGGAAACCCTTGAAGCATCCAACT
CACGTGCATGATCATACAAGCTGTTTTGATGGTTCATCCCTTCTGTGTCCAGCATCTAACCTTT
TACTTCTGTGTAGGAAATAATTTAATTACAAGTCCAGGAGTGATCTGCTCTACTCATGGGTGGA
GGAGACCAGTGTAGACCCAGTGAGAGCTAAAAGTGATGCAGAGGTCCCTGTGGAAGCTCAACTG
CAAAAGTGATGCCCTCCGTCAGCAGCTCTCCAGCATGTCCTCTCGATTGATCCTCAGATGAATT
GTTCTCATCTGAAGCTTGCTGTCTTTTTACAAGATGTGCTTTTACTCTCTTCCAGGAAGTAGGT
TTTTTCAGCTGAGAATTAATAATGATCTTTCTCTTTGGAAGTCATATCAAAGTATAATTGATGG
GGGCCTTGTTTTGTTTTGTTTTGGAGACAGGGTCTCACTGTGTGGTCCTAGCTGGCCTGGAACT
CACCATGTAGATCAGGCTGGACTGAACTCTTAAAAGTTGACCTGCCTCTGCCTCATAAATTCTG
GGATAGAAAGCGTGTACCACCAGGCCCAGCAAAGAGGGCTATTCTAAATGTCACGGTCAATGGA
GTTAGAATATAGACAAATGCAGTTGATAATTCCCTATAGAAACTTGATCAATTTAATTTTAATC
CATTCTTTCCTTCTCTTTTTTCTCACTCTGTCTTACACACATACACACGTGCACACACACACAC
ACACTAAGTGCCTAGACTTTAATTAGATCTAGCAATTGGAACGTTAGTAAGCCTGAGTTTTTAC
ATGATTGCATTCCTACATCCTTGTAAACTTTAAGTAACCACCATTGCAGTTGGTTCCTTTGTTA
AAGTCTAATTTGCAGCCAAGAAAGAATAATTCTCATCCCAAGAAACACTTAATAGGGACTACTA
GCAATAGGAACTAAATGACCCTCCCCCCCAGCCTAGTGTCACTTGGCTCCTTCTGCCAAGGCAC
CACAGAGTGCACTTGCTCATGTCATGTGCCTCTCTGAGCAGACGCCTGGGACACCTGGCTCTGT
CTTCCTACAGCTGCTCGCACTGACCTGTGGGAACCTGTGGGTCATCCCCAGGCTGGATGGAGTA
CACACTAGAAGAGGGATAGTGCCTGGCATTGGGGCAGCATCTGCTCAGCACACGGAAAGGGGCC
TGGTTCCCTCTCCCCTGGTAGGAGTTGGTCCAGCCTCCTCCCAGACCCAGCTGGAGGCTGAGAG
GAGGTGGTGAATGCTAATGAGGATGAAAAGACATGGGGTGAAAGGAAGGGACAAGACCCACTTC
CAAAGAAGATTACCATGTTAAGAGGGGTGAGCAGTCCTCTGCTCTGCCCAGGACCCTGCCTGGA
CACTGCATTCCCATTTATGGTGCTCAGTATTCTGGCATTATGCAGCAGCCTCACACCTTTCCTC
TCCTGCTTCATACCCTGCAGTTCTCCTATTATCTGACTAGAACAGCCCTCTAGGCAACAGTGAT
CAATTTATGAGTTTGGAGAAGCTAATAATCAGAAGGATAAAAGCTGTAGCATTTCACCTTTAAT
ACAGTGCTGAAGAGGGAGCCTTTCTCTGAGCCCCGCACTAACCTCATTCCACACAAGACTTCTG
CAAGTGACGTCTCCACGCTGAACCCTAAGTCACTGATGCACAACACTGCTGTAAGACTCACCTC
TCAAAACACGACTTTTTCGTCACTATTAAGGAGCAGAAAGTTCTAGAAATGATCCCAACCTCGT
CCCCTGTGCAGCTAGGATCTCCCCACATCCCTAACAAAGCCGAGCACATAAGTGTCTGTGGTCT
AGCGTTTCATCTCCATAGCAACCCAAGGGACTCTTGGCCAGAAGAAAGAGAGAGGGAAGCCTCA
CTAGGGGTTGGCCTTATGGAAGGAAATCCCCCCTCTGCTTTGCTTTAAGGACCAAATTTCTTTG
GCCAAAGAAGTTGTTTCCGTGTTAGTCCCATACCTTGAAATAATACGTACCATGGCTCCCACCT
ACCTGTTTATGTCCCCCCAATCACCTTTAGGGATACTGTTTATTCTTTAAAAAGAAGCAGATGG
CATTTGTTTCTGCTCCTGTAATGGAGAAACAGCCAGCTTCACCTGCATCCCCTTTACAGCCAGC
AGCTCCCTTCAGACGTAAAGCAGAGGGGATGGCAGAGAAGAGCTCAGCTCAGAGCCAGTGACCC
AGTGATTCTGTCACGAGAGAACTTGTATATAAAGTAGTCATGAAGACACTGACCTTGCACTTGT
ACATAACTATACTATAGTGTCCAGAATGTTCAGACATTCAGGGTGTACATAAACAGAAAAGTAT
CATAATGTATTTTTATTAAACAGTAACATCTTGAGTTTCACCTAATCTGTTTCTGTGCCATAGA
CTGGGTATCCGAGCTCTGGGAGATCATCTTCCCAGACCCCAGTCCGTCGATAAGGCATTGTACA
CCATGCTGGTGTGTTCGGTAGCCTCGTGCCCATTAGGTAACTAAACAATGATTCAGCTCTTAGA
ATACAGGAAGAGAGCAAGCCTGGTGACACACAGCTGTGATCCAAGCATTCAGAAGACAGAGGCA
GGAAGAAAAAATTCAAAGATGGGGCTGGAGAGATGCCTCAGTGGTTAAGGCTGCTCTTGGACAG
GACACTGGTTCAGTTCCCAGCACTCACATGGTGGCTCACAACCTTCTATGACTACAACCCCAGG
TAACCCAACACCCTCTTCTGTCCTCCTCGGGTGCCTGTGGCGGTGTACATGGTGCACAGCACGA
ACAGGCAAAACACCCAATACACACAGAAATAAAGAATTCAAGAATACCCTGGGCTACATAGCAA
TACCCTGTCTCAGAACAAACCAACCCATGAAGAGCCAGGCAGTGTGTCTATTTCCATGACCGTA
CACAAGCGAACTCAGGAAGCAAGAGTGTCCATCACTGCTGTAACGTCAATGCTCCTTGTGATTT
CGGCATCTCTGTGGGGCGAGGTGTTCTATCACTCTAAAGTCAAGGACTATGTCACCTGTGAACG
TCTAGACTTTGCAAAGGGGCTCTCTAGGCTGCATTGTTGTGGCTTTGTCTAAAATTTTAATGAC
ATTTCTGAGAACCATGTTCTTTTTATACTAAAAACTGGGGATGGGAGGGCTCATTTGTTGATAA
ATAGCACTATTTTCCCACACCTCAGCCTCCTGTCCCCGTCCTGGTCTTCCCTACACAGTCTGGA
GAGGGCTCTGAAAGGTCCAAATCGGTGTGGCACAAAAGCAACCCATTGCCTCCTGAGCTAACCT
GGAAGATGACTGTCAGCAAAAGGAAAATACCAGAATATCTTGAAGGCTAGAAGCGTAAGATGGG
ATCTCATTAGGGAACTGGATGAACAAGAGCAGAGAGCCTCTGGTGGGTAACGCTGCAGCCTGCC
AGCGCCCGCCCTCTCTCAACATAGCAGAGTGTGCATGGTAAGGAAGTGAATCACCTCCTTGGGG
GATGGTGCTGTTTTTATGAAAACCTTTGATCCTTGGTGTCCTTTAATTGATCTGTTCAACAAAT
ATTTACTAAACACTTGTAAGCTAAGCTAACATTAGGGCAGTGACTGAGGTGAAAACCCAGCTCT
TTAGACAGCTATCATCCTAGGAGAGCTTCCTAGAAGCAGAACCAAGAAGCCAGAGGTTCTTCCT
AGGATGAGCTTTGGCTTCCTAAGGAAATCTGAAATGTTGACCCTGGTCACAACCTCCCAGCACA
GCTTTGGAATGAGACATCAGCATGGCCTCCTCTGGCTGAGCAGAGCCTCTGGAGCTCCACACCC
TGCCTGCAGGGAGCCCTCAGGGTGCCCTCCAGAGTGCAGGGAGAAACTGGCACCTTCTTTCCTA
AAGGCAATAACAGAAGCTGCTCTCAGAACTTGACTCTGCACAAAACACTAGTGAAGCCTGCTGA
ACTAATTCTGCCTCTGGAAATCTTTTCTGGTTATTTACAGTTTGTTGTTTTGTTTTGATCCAAG
CTTAGTTTGTTAATATGTGTAACTTGGCATCTGTTGCACTTGTGTAAATATGGAGTAAGTATTG
TAAACTATTTAATTGCTGGGATTGGTGGTGTTATACATACATTTAGGACTGCAATTTTTGGTAT
TTTTTGTATTGTAAAATAACAGCTAATTTAATCAGGAACAAGAGAATTAATGGGGGGGTCTGCA
TTTTAAATGCAAATGTGAAGCACTTGTATATAAACAGAAGTAAATACTATAATACAAAATTCCT
TCTGAAATAAAAGTAGATCTGGTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063284645 ⟹ XP_063140715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,563,271 - 138,667,226 (+)	NCBI

RefSeq Acc Id:

XR_010064702

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	138,563,271 - 138,680,206 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_112641	(Get FASTA)	NCBI Sequence Viewer
	XP_063140715	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB21017	(Get FASTA)	NCBI Sequence Viewer
	BAB21018	(Get FASTA)	NCBI Sequence Viewer
	BAB21058	(Get FASTA)	NCBI Sequence Viewer
	EDL80213	(Get FASTA)	NCBI Sequence Viewer
	EDL80214	(Get FASTA)	NCBI Sequence Viewer
	EDL80215	(Get FASTA)	NCBI Sequence Viewer
	EDL80216	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028847
GenBank Protein	Q99J86	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_112641 ⟸ NM_031351
- Peptide Label:	precursor
- UniProtKB:	Q99PW0 (UniProtKB/Swiss-Prot), Q99J86 (UniProtKB/Swiss-Prot), A6HQB3 (UniProtKB/TrEMBL), A0A8I6AUX0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVAAAAAAEATEARLRGYTTATAAPAGWKERQHRPCAATGAWRPWPRAGLCLPRVLSRALSPPP LLPLLPLLFSLLLLPLPREAEAAAVAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPTGWV GEQCQHCGGRFRLTGSSGFVTDGPGNYKYKTKCTWLIEGQPNKIMRLRFNHFATECSWDHLYVY DGDSIYAPLIAAFSGLIVPERDGNETAPEVTVTSGYALLHFFSDAAYNLTGFNITYNFDMCPNN CSGRGECKSSNSSSTVECECSENWKGESCDIPHCTDNCGFPHRGICNASDTRGCSCFPHWQGPG CSIPVPANQSFWTREEYSDLKLPRASHKAVVNGNIMWVVGGYMFNHSDYSMVLAYDLASREWLS LNHSVNSVVVRYGHSLALHKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKDQYAVV GHSAHIVTLSSGRVVMLVIFGHCPLYGYISVVQEYDLEKNTWSILQTQGALVQGGYGHSSVYDH RTKALYVHGGYKAFSANKYRLADDLYRYHVDTQMWTILKDSRFFRYLHTAVIVSGTMLVFGGNT HNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPELHHDVNRFGHSAVLHNSTMYVFGGFNSLLL SDVLVFTSEQCDAHRSEAACVAAGPGIRCLWDTQSSRCTSWELATEEQAEKLKSECFSKRTLDH DRCDQHTDCYSCTANTNDCHWCNDHCVPVNHSCTEGQISIAKYDNCPKDNPMYYCNKKTSCRSC ALDQNCQWEPRNQECIALPENICGIGWHLVGNSCLKITTAKENYDNAKLSCRNHNAFLASLTSQ KKVEFVLKQLRLMQSSQSTSKLTLTPWVGLRKINVSYWCWEDMSPFTNSLLQWMPSEPSDAGFC GILSEPSTRGLKAATCINPLNGSVCERPANHSAKQCRTPCALRTACGECTSSSSECMWCSNMKQ CVDSNAYVASFPFGQCMEWYTMSSCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSY KGPVKMPSHASTGNVYPQPLLNSSMCLEDSRYNWSFIHCPACQCNGHSKCINQSICEKCEDLTT GKHCETCISGFYGDPTNGGKCQPCKCNGHASLCNTNTGKCFCTTKGVKGEECQLCEVENRYQGN PLKGTCYYTLLIDYQFTFSLSQEDDRYYTAINFVATPDEQNRDLDMFINASKNFNLNITWATSF PAGTQTGEEVPVVSKTNIKEYKDSFSNEKFDFRNHPNITFFVYVSNFTWPIKIQIAFSQHSNFM DLVQFFVTFFSCFLSLLLVAAVVWKIKQSCWASRRREQLLREMQQMASRPFASVNVALETDEEP PDLIGGSIKTVPKPIALEPCFGNKAAVLSVFVRLPRGLGGIPPPGQSGLAVASALVDISQQMPI VYKEKSGAVRNRKQQPPAQPGTCI hide sequence

Ensembl Acc Id:

ENSRNOP00000028847 ⟸ ENSRNOT00000028847

Ensembl Acc Id:

ENSRNOP00000097783 ⟸ ENSRNOT00000104219

RefSeq Acc Id:	XP_063140715 ⟸ XM_063284645
- Peptide Label:	isoform X1
- UniProtKB:	A6HQB4 (UniProtKB/TrEMBL)

Protein Domains

C-type lectin CUB EGF-like Laminin EGF-like PSI

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q99J86-F1-model_v2	AlphaFold	Q99J86	1-1432	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692442

Promoter ID:

EPDNEW_R2966

Type:

initiation region

Name:

Atrn_1

Description:

attractin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	123,434,436 - 123,434,496	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69063	AgrOrtholog
BioCyc Gene	G2FUF-47833	BioCyc
Ensembl Genes	ENSRNOG00000021240	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000028847	ENTREZGENE
Gene3D-CATH	2.120.10.80	UniProtKB/Swiss-Prot
	2.60.120.290	UniProtKB/Swiss-Prot
	3.10.100.10	UniProtKB/Swiss-Prot
	Laminin	UniProtKB/Swiss-Prot
InterPro	Beta-prop_ATRN-MKLN-like	UniProtKB/Swiss-Prot
	C-type_lectin-like	UniProtKB/Swiss-Prot
	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot
	CTDL_fold	UniProtKB/Swiss-Prot
	CUB_dom	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	GBD_ATRN	UniProtKB/Swiss-Prot
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot
	Laminin_EGF	UniProtKB/Swiss-Prot
	LMN_ATRN_NET-like_EGF	UniProtKB/Swiss-Prot
	LZTR1/Attractin	UniProtKB/Swiss-Prot
	Plexin_repeat	UniProtKB/Swiss-Prot
	PSI	UniProtKB/Swiss-Prot
	Sperma_CUB_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:83526	UniProtKB/Swiss-Prot
NCBI Gene	83526	ENTREZGENE
PANTHER	ATTRACTIN	UniProtKB/Swiss-Prot
	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	UniProtKB/Swiss-Prot
Pfam	Beta-prop_ATRN-LZTR1	UniProtKB/Swiss-Prot
	CUB	UniProtKB/Swiss-Prot
	EGF_LMN_ATRN	UniProtKB/Swiss-Prot
	EGF_Teneurin	UniProtKB/Swiss-Prot
	GBD_ATRN	UniProtKB/Swiss-Prot
	Lectin_C	UniProtKB/Swiss-Prot
	PSI	UniProtKB/Swiss-Prot
PharmGKB	ATRN	RGD
PhenoGen	Atrn	PhenoGen
PROSITE	C_TYPE_LECTIN_2	UniProtKB/Swiss-Prot
	CUB	UniProtKB/Swiss-Prot
	EGF_1	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	EGF_3	UniProtKB/Swiss-Prot
	EGF_LAM_1	UniProtKB/Swiss-Prot
	EGF_LAM_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000021240	RatGTEx
SMART	CLECT	UniProtKB/Swiss-Prot
	CUB	UniProtKB/Swiss-Prot
	EGF	UniProtKB/Swiss-Prot
	EGF_Lam	UniProtKB/Swiss-Prot
	PSI	UniProtKB/Swiss-Prot
Superfamily-SCOP	EGF/Laminin	UniProtKB/Swiss-Prot
	SSF117281	UniProtKB/Swiss-Prot
	SSF49854	UniProtKB/Swiss-Prot
	SSF56436	UniProtKB/Swiss-Prot
TIGR	TC205110
	TC205111
UniProt	A0A8I6AUX0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QFH6_RAT	UniProtKB/TrEMBL
	A6HQB3	ENTREZGENE, UniProtKB/TrEMBL
	A6HQB4	ENTREZGENE, UniProtKB/TrEMBL
	A6HQB5_RAT	UniProtKB/TrEMBL
	ATRN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q99PW0	ENTREZGENE
UniProt Secondary	Q99PW0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Atrn	attractin			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_disease	responsible for dark coat color and nuerological defects	70520
gene_disease	8-bp deletion at a splice donor site responsible for the zitter (zi) mutation which induces hypomyelination and vacuolation in the central nervous system	67998
gene_disease	genomic deletion including exon 1 is responsible for the myelin vacuolation (mv) rat	1299186
gene_process	regulates monocyte-T cell interaction, energy homeostasis, and agouti-related hair pigmentation	67998
gene_process	involved in monocyte-T cell interaction, agouti-related hair pigmentation, and control of energy homeostasis	67998
gene_process	increases cell survival against oxidative stress	1299185

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Mammalian Phenotype