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Gene: Csnk1g3 (casein kinase 1, gamma 3) Rattus norvegicus

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Symbol:

Csnk1g3

Name:

casein kinase 1, gamma 3

RGD ID:

621408

Description:

Enables protein serine/threonine kinase activity. Predicted to be involved in endocytosis; positive regulation of canonical Wnt signaling pathway; and signal transduction. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Orthologous to human CSNK1G3 (casein kinase 1 gamma 3); PARTICIPATES IN Hedgehog signaling pathway; p53 signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

casein kinase 1 gamma 3 isoform; casein kinase I; casein kinase I isoform gamma-3; CKI-gamma 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CSNK1G3 (casein kinase 1 gamma 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Csnk1g3 (casein kinase 1, gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Csnk1g3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CSNK1G3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CSNK1G3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Csnk1g3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CSNK1G3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CSNK1G3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Csnk1g3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Csnk1g3 (casein kinase 1 gamma 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CSNK1G3 (casein kinase 1 gamma 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Csnk1g3 (casein kinase 1, gamma 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCK3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	csnk-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gish	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YCK2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	csnk1g1	Alliance	DIOPT (InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	csnk1g3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	49,497,839 - 49,584,828 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	49,497,839 - 49,584,828 (+)	Ensembl				GRCr8
mRatBN7.2	18	47,299,547 - 47,386,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	47,299,579 - 47,386,535 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	49,359,291 - 49,446,305 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	50,060,155 - 50,147,419 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	47,865,239 - 47,952,264 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	48,831,209 - 48,913,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	48,853,418 - 48,911,122 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	48,043,786 - 48,126,393 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	49,369,579 - 49,451,893 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	45,466,118 - 45,564,958 (+)	NCBI		Celera
RGSC_v3.1	18	49,428,864 - 49,487,465 (+)	NCBI
Cytogenetic Map	18	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-bromohexadecanoic acid (ISO)

2-ethoxyethanol (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

calcium atom (EXP)

calcium(0) (EXP)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

oxaliplatin (EXP)

ozone (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

topotecan (EXP)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (IBA)

positive regulation of canonical Wnt signaling pathway (IBA)

protein autophosphorylation (IDA)

protein phosphorylation (IDA)

signal transduction (IBA)

Wnt signaling pathway (IEA)

Cellular Component

cytoplasm (IBA,IEA)

nucleus (IBA)

plasma membrane (IBA)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

nucleotide binding (IEA)

protein kinase activity (IEA)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IDA,IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (IEA,ISO)

p53 signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Casein kinase I gamma subfamily. Molecular cloning, expression, and characterization of three mammalian isoforms and complementation of defects in the Saccharomyces cerevisiae YCK genes.	Zhai L, etal., J Biol Chem 1995 May 26;270(21):12717-24.

Additional References at PubMed

PMID:8889548	PMID:11744621	PMID:25500533

Genomics

Comparative Map Data

Csnk1g3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	49,497,839 - 49,584,828 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	18	49,497,839 - 49,584,828 (+)	Ensembl				GRCr8
mRatBN7.2	18	47,299,547 - 47,386,538 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	47,299,579 - 47,386,535 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	18	49,359,291 - 49,446,305 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	50,060,155 - 50,147,419 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	47,865,239 - 47,952,264 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	48,831,209 - 48,913,341 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	48,853,418 - 48,911,122 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	18	48,043,786 - 48,126,393 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	18	49,369,579 - 49,451,893 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	18	45,466,118 - 45,564,958 (+)	NCBI		Celera
RGSC_v3.1	18	49,428,864 - 49,487,465 (+)	NCBI
Cytogenetic Map	18	q11	NCBI

CSNK1G3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	123,512,177 - 123,617,049 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	123,512,067 - 123,617,049 (+)	Ensembl			hg38	GRCh38
GRCh37	5	122,847,871 - 122,952,743 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	122,875,692 - 122,980,364 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	122,909,226 - 122,979,039	NCBI
Celera	5	118,803,181 - 118,907,853 (+)	NCBI		Celera
Cytogenetic Map	5	q23.2	NCBI
HuRef	5	118,036,056 - 118,141,228 (+)	NCBI		HuRef
CHM1_1	5	122,280,390 - 122,385,357 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	124,028,409 - 124,133,283 (+)	NCBI		T2T-CHM13v2.0

Csnk1g3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	53,995,154 - 54,088,756 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	53,995,194 - 54,088,620 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	18	53,862,082 - 53,955,684 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	53,862,122 - 53,955,548 (+)	Ensembl			mm10	GRCm38
MGSCv37	18	54,021,767 - 54,115,338 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	18	54,032,013 - 54,080,917 (+)	NCBI		MGSCv36	mm8
Celera	18	55,159,385 - 55,248,672 (+)	NCBI		Celera
Cytogenetic Map	18	D1- D2	NCBI
cM Map	18	29.1	NCBI

Csnk1g3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955521	1,660,090 - 1,721,874 (+)	Ensembl
ChiLan1.0	NW_004955521	1,660,090 - 1,721,811 (+)	NCBI	ChiLan1.0	ChiLan1.0

CSNK1G3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	118,796,019 - 118,903,270 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	116,949,663 - 117,056,936 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	118,903,016 - 119,008,030 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	124,683,567 - 124,786,916 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	124,683,566 - 124,786,916 (+)	Ensembl			panPan2	panpan1.1

CSNK1G3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	13,357,816 - 13,465,708 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	13,357,894 - 13,464,138 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	12,138,614 - 12,246,367 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	14,062,805 - 14,170,567 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	14,062,781 - 14,170,558 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	12,804,383 - 12,912,563 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	12,651,006 - 12,759,159 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	13,253,204 - 13,361,087 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Csnk1g3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	135,797,432 - 135,888,149 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936575	3,878,604 - 3,965,758 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936575	3,858,996 - 3,965,758 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSNK1G3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	127,017,026 - 127,129,543 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	127,013,736 - 127,129,547 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	132,404,785 - 132,482,848 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSNK1G3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	26,555,606 - 26,659,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	26,588,776 - 26,657,048 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666034	51,464,061 - 51,568,783 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csnk1g3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	18,384,941 - 18,494,964 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624774	18,383,645 - 18,495,013 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Csnk1g3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	15	77,824,532 - 77,911,435 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Csnk1g3
583 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1066
Count of miRNA genes:	325
Interacting mature miRNAs:	453
Transcripts:	ENSRNOT00000022792
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25071126	83910656	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	22015562	61600538	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	23494057	85487725	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
1331736	Bp227	Blood pressure QTL 227	2.791		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	48917054	60064728	Rat
631834	Sach3	Saccharin preference QTL 3	3.9	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	18	38575919	83575919	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26822186	71822186	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26822186	71822186	Rat
6893683	Bw110	Body weight QTL 110	2.7	0.002	body mass (VT:0001259)	body weight (CMO:0000012)	18	45620306	86134022	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26822186	71822186	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	63968306	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26822186	71822186	Rat
9589041	Epfw12	Epididymal fat weight QTL 12	17.08	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	18	48915737	86134022	Rat
8694432	Bw165	Body weight QTL 165	3.81	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	48915737	86134022	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26822186	71822186	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26822186	71822186	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31990891	76990891	Rat
1331770	Bp234	Blood pressure QTL 234	3.807		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	45620306	86134022	Rat
61360	Eaey	Experimental allergic encephalomyelitis QTL y	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	18	49187226	62647720	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	31610505	85493247	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	12066482	85493247	Rat
12880368	Bw187	Body weight QTL 187		0.045	body mass (VT:0001259)	body weight (CMO:0000012)	18	33379158	78379158	Rat
61367	Iddm4	Insulin dependent diabetes mellitus QTL 4	2.33	0.0074	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	40462383	85462383	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31990891	76990891	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	54490981	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	12066482	85493247	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15642280	86134022	Rat
11565454	Kidm59	Kidney mass QTL 59		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	7065728	52065728	Rat
12904069	Cm123	Cardiac mass QTL 123		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	33379158	78379158	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31610505	77371277	Rat
2301409	Cm70	Cardiac mass QTL 70		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	18	7065728	52065728	Rat
12904070	Cm124	Cardiac mass QTL 124		0.01	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	33379158	78379158	Rat
12904071	Am18	Aortic mass QTL 18		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	33379158	78379158	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26822186	71822186	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31522783	76522783	Rat
12904067	Cm122	Cardiac mass QTL 122		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	33379158	78379158	Rat
12904716	Am21	Aortic mass QTL 21		0.005	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	7065728	52065728	Rat
1331806	Bp229	Blood pressure QTL 229	4.36484		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
2301417	Bp319	Blood pressure QTL 319		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	33379158	78379158	Rat
12904073	Kidm71	Kidney mass QTL 71		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	33379158	78379158	Rat
12904714	Cm131	Cardiac mass QTL 131		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	7065728	52065728	Rat
12904715	Cm132	Cardiac mass QTL 132		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	7065728	52065728	Rat
1331780	Bp238	Blood pressure QTL 238	3.269		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	48917054	60064728	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	31610505	77371277	Rat
631518	Bw11	Body weight QTL 11	2.8		body mass (VT:0001259)	body weight (CMO:0000012)	18	36121626	81121626	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	31990891	76990891	Rat
8694366	Abfw8	Abdominal fat weight QTL 8	6.38	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	18	48915737	86134022	Rat
631509	Sald2	Serum aldosterone level QTL 2	2.9		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	18	26415821	71415821	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	31644508	79484311	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19553532	85493247	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	12066482	57066482	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31990891	76990891	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	31610505	72538878	Rat

Markers in Region

RH133872

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	47,385,035 - 47,385,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	48,911,839 - 48,912,035	NCBI	Rnor6.0
Rnor_5.0	18	48,124,891 - 48,125,087	UniSTS	Rnor5.0
RGSC_v3.4	18	49,450,391 - 49,450,587	UniSTS	RGSC3.4
Celera	18	45,563,456 - 45,563,652	UniSTS
Cytogenetic Map	18	q11	UniSTS

BE110749

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	47,334,582 - 47,334,796 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	48,862,446 - 48,862,659	NCBI	Rnor6.0
Rnor_5.0	18	48,075,023 - 48,075,236	UniSTS	Rnor5.0
RGSC_v3.4	18	49,400,519 - 49,400,732	UniSTS	RGSC3.4
Celera	18	45,513,223 - 45,513,436	UniSTS
Cytogenetic Map	18	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001393749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AW920563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA505526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV078589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN931624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022792 ⟹ ENSRNOP00000022792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	49,497,962 - 49,576,723 (+)	Ensembl
mRatBN7.2 Ensembl	18	47,299,579 - 47,378,433 (+)	Ensembl
Rnor_6.0 Ensembl	18	48,853,418 - 48,911,122 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098391 ⟹ ENSRNOP00000079920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	49,497,962 - 49,584,824 (+)	Ensembl
mRatBN7.2 Ensembl	18	47,299,579 - 47,385,299 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101548 ⟹ ENSRNOP00000096330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	49,497,993 - 49,559,321 (+)	Ensembl
mRatBN7.2 Ensembl	18	47,299,579 - 47,361,030 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103210 ⟹ ENSRNOP00000093418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	49,497,839 - 49,584,828 (+)	Ensembl
mRatBN7.2 Ensembl	18	47,299,579 - 47,386,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111040 ⟹ ENSRNOP00000097230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	18	49,497,848 - 49,584,825 (+)	Ensembl
mRatBN7.2 Ensembl	18	47,299,579 - 47,386,535 (+)	Ensembl

RefSeq Acc Id:

NM_001393749 ⟹ NP_001380678

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,497,839 - 49,584,828 (+)	NCBI
mRatBN7.2	18	47,299,547 - 47,386,538 (+)	NCBI

RefSeq Acc Id:

NM_001393750 ⟹ NP_001380679

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,497,839 - 49,584,828 (+)	NCBI
mRatBN7.2	18	47,299,547 - 47,386,538 (+)	NCBI

RefSeq Acc Id:

NM_022855 ⟹ NP_074046

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,497,839 - 49,584,828 (+)	NCBI
mRatBN7.2	18	47,299,547 - 47,386,538 (+)	NCBI
Rnor_6.0	18	48,831,209 - 48,913,341 (+)	NCBI
Rnor_5.0	18	48,043,786 - 48,126,393 (+)	NCBI
RGSC_v3.4	18	49,369,579 - 49,451,893 (+)	RGD
Celera	18	45,466,118 - 45,564,958 (+)	NCBI

Sequence:

show sequence

CGGTCTTGCCTTAAGAATAAATAGATAAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGC
CTCGTAAGCGCAAGGCCCTGGGTTCAGTCCTCAGCTCCGCGCCGGCCGGAGAGACTAGACGCTT
TCCTTTCTTTTTCACCCCCTCTTTTCTTTCGTTCTTTTTTTTTTTTTTCCCCCTCCTCTCATGT
ATTCACTTCCGGGTCCGGTGCCGCTTCCGGATGCTCGAGGCCGAAGGATGTTTGACCTCCGGAT
AAGCGAGGCGCCGCCGTGCATTCATTCCCGGTTGCATCGGTGGCCACAGCCGCGGCCCGGACGG
CGACTCCGCTCTCAGCGGCGGCAGTAAGGAGGAGCCGGCGGCGGCGCGCTGAGCCAGTAGACGC
GGGCCCGTCCTTCCCTCGCTCGCGCCTTCCTTCCTCGGCCTCGTTCATCTTCAGCGGCCGGCGG
CGGGGATGTGCCGGCGCTGACGGGCGGACGCGCGCCGGGCCGAGCCGCTGCCCGCGGCCGCGCC
TCTGAGCTCTCTATCGGCACCAGCTTATATCACCGAGAAGATAATTGTAAAGGCATACCTTGTT
GAGAACATAACTGAGAGGTTGTACGGATGGGATGAACACGCGTCAGTTGCCTGCCTGTCTGCTG
GAGTTTGGATGCTAGCGTTGCTCATAGGGAACTGCTGCCTAGGGATGCACCTGCTCTACAGTAC
CCCATTTCATCGTGCTTGTCTCGATTAAAGAATTCAAAGTGGAGTACCGCAAACTTGATATGGA
TAATAAAAAGAAAGACAAGGACAAATCAGATGACAGAATGGCACGGCCCAGTGGTCGGTCAGGG
CACAGCACTCGAGGAACTGGGTCTTCTTCATCTGGAGTTTTAATGGTTGGACCTAACTTTAGAG
TTGGGAAAAAAATTGGATGTGGCAATTTTGGAGAATTACGATTAGGGAAAAATTTATATACAAA
TGAATATGTGGCGATTAAACTGGAGCCCATGAAATCCAGAGCACCACAGCTGCATTTGGAATAC
AGATTCTATAAGCAGTTAGGATCTGGAGATGGTATACCTCAAGTTTACTATTTTGGCCCTTGTG
GTAAATACAACGCTATGGTGCTGGAACTGCTGGGACCTAGTTTGGAAGATTTGTTTGACCTCTG
TGATAGAACATTTTCTCTTAAAACCGTTCTCATGATAGCTATACAGCTGATTTCTCGCATGGAG
TATGTCCACTCAAAGAACTTGATATACAGAGATGTGAAGCCCGAGAATTTCTTAATAGGACGGC
CAGGAAACAAAGCCCAGCAAGTCATTCACATCATAGATTTTGGTTTGGCAAAGGAATATATTGA
TCCAGAGACAAAGAAACATATACCATACAGAGAACACAAAAGCCTTACTGGAACAGCCAGATAC
ATGAGCATAAACACACATCTAGGAAAAGAACAGAGCAGAAGAGACGATTTAGAAGCTTTAGGAC
ATATGTTCATGTATTTCCTGAGAGGCAGTCTTCCTTGGCAAGGCCTAAAGGCAGATACATTAAA
AGAGAGATATCAGAAAATTGGAGACACAAAACGAGCCACACCGATAGAAGTGCTGTGTGAAAAC
TTCCCAGAAGAAATGGCAACATATCTTCGTTACGTACGAAGGCTAGATTTTTTTGAAAAGCCAG
ACTATGATTACTTAAGAAAGCTTTTTACTGACTTGTTTGATCGCAAAGGGTATATGTTTGATTA
TGAATATGACTGGATTGGTAAACAGTTGCCTACTCCTGTAGGTGCAGTTCAGCAAGACCCGGCT
CTGTCATCGAACAGAGAAGCACACCAACACAGAGACAAGATACAGCAGTCTAAAAACCAGTCGG
CAGACCACAGGGCAGCTTGGGACTCCCAGCAGGCAAATCCCCACCATTTGAGAGCTCACCTTGC
AGCAGACAGACATGGTGGCTCGGTACAGGTTGTAAGTTCTACAAATGGAGAGCTAAACACGGAT
GACCCCACGGCGGGACGGTCAAATGCACCCATTACAGCCCCTACGGAAGTAGAAGTGATGGATG
AAACCAAGTGCTGCTGCTTTTTCAAACGAAGGAAAAGGAAAACCATACAACGTCACAAGTGACT
GGACACAGACAGAGCCTGGGGAGTTACTTACATGTTTATATGCTGTCTCGTGATTAAAATCATC
TCTAGAGTGACCACATATATTTTCAAGGACTCACTCTTGAAACAAAAAAGTCATACTTTCATAT
TTCATTTTGTGGTTGTCTTATATTCATTCCCCCACCCCTAATTTAACTTTATGGAAGCTTTAAA
ATCTTGTCAGAACATGAGTGCTTTGCCCATCCTTGAATGGAATGGACCAATGAAGTGTATTGAT
GAACACAGTTCCATAGGAAAACAATACAGGTGTCCAAATGTCAATTAATTGTACCTAATTTGAT
TTCTTTATGTCTTCTATAAAAGCATAATCAAACAGGAATTTTCCTCCCACTGGATACTGAAGCA
GAGAAAACAGTTGCCCAAATATTAAAAACAACTTTTTTGAACAGTTCCTGTTTTGTGACATCTG
CATTGATTTCAGTATGACCGATGGTACTGTTATTCATGAATCATATTGGCCTTCTCTTTGTGAA
ATCATGGTACAGTCACTGCCCAGAGGTACTGAGGAAAAAGTACTATGGGATTGGCAAACTGTGG
CGGTCAATAAGTCGGCAGTGTTGGAAATATGAGCTCGGCTTCTGTGGCGCCACTGTGTGAGGTG
CAGCTGCAGACGAAGAAGCGCCAGGAGCATTTGCTTAATGTCACTCTGCTTCCAGATGATAATA
CATGATAGATGGCGAGAACTGAGTACTGGAGAAGTAATGTGTGTTAGAGTTTAAAAACACACTG
AGGAAAGGATGACAATGTGAACTTCTTTTCAGTGTGTAAGGCTGGAGCCCCTTAAGAGCCTACT
TACTGCTCATGGCCACATTTCTCTCAGAAGCAGAAACCCGAGGACGTGCCATACAGTGGTGGCT
GCCTGTTATGTTGTTCTTCAATTAAAGAAAAGAATCATACTCCCAGCAATAAACACTGGGCCAC
TCTGCTGCCCTCTGTGCACACGAGTCTCTTGTATTCAGCTTGGCTAGGTCTCTGGAATTCCCTG
TCTTGAGCACAATGTCCATGATTGGAGAATATTCTGGAGAGAGGGTGGGCAGGGTGCTTTGCCT
CCATAGCTTTCACAGTGCCTGCATATGAACAGCGTAACAGTTCTGTTGTTAGCCAAGTCCATTC
CACTTCGCAAGCCTGCTTTGTAAGGACGTAAGGACACAGGCATACTTCTTGTCTCATGCTGTCA
GCCGGGTTGTCGGGAGCTACAGACTGGCTAGAAAGATGCTGTGACCATGTCACACACTCATCTT
TACTTAGGAAGTTGTCGCTCCTGCCACGCTCTCTCCTCTGTCCTACTTGTGAGCCTTCAGGTGT
GCTTATTTATTTTTTTGTTTGTCTCAAGGTAACATTTAAAATATGTATTAAAGGAAAGGAATCC
ACATTTTTTTACTTCATTATTGAATTTACAGGTATTTAATTGTATTTTGTAATTTATTTTTCTT
ATTAGCCAAAAGTTCAATGTGTTGCTTTGATAAATTGGGCACCCACATGAACACCCCAGATCAG
GACGTTGTTCATCTTTCTTCTTGATTTCGAAGACCTACACTCAACTGAGAAAACCTTCGCTGTA
TAATCTGATCAACAGTTTCCATTCATTTGTACACTGTCATGATATCTGAACTGCAGGAGTTAAA
TACTGAGTTTTATTTTGTTTGCTTTGAGCAAGGTAGATGGATATTCTGGCCATTTATAATGTGA
AACCACTTCTTTACAGTATTTGACCAAATTTGTGTGTCTATGATATTTGTAAATACATGCGATA
TCTGTATTTCTTATCATAAACCTATTTAGTTTTATTCTCAGTAGGGTTTTTTGGACTGTACAGT
GTTTATATGATCTGAACTCCTTATACATAAGAAGGTGTGTATATTAATCCAATTATGGACTTAA
ATATTTTAAAGTATGAATACCCTTATTTGCTGCAAAGGCCAGTGTGTAGACATTTGCTTTTTAG
CAATATTTTTAAGTGCTCCATTTTAGTGCCAGAGAATAAGTCTTTGGCACAGACTGGTCAGTAA
TAGGTAATGCAGGTATGTTCAGGTTAAGCCAACGATGTTTTGCATTTTTATGCTTCTTTTCTGT
CAACACTAATGAAATCAACATTGCCTGAATGTCTGAATACTGAAACACAGCCCTGTTTAAAAGT
ATGTAACTGAAAAAGAAATAAATAAAGGTAGTTTTTTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063277547 ⟹ XP_063133617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277548 ⟹ XP_063133618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,367 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277549 ⟹ XP_063133619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,151 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277550 ⟹ XP_063133620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,372 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277551 ⟹ XP_063133621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,518,687 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277552 ⟹ XP_063133622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277553 ⟹ XP_063133623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277555 ⟹ XP_063133625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277556 ⟹ XP_063133626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277557 ⟹ XP_063133627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277558 ⟹ XP_063133628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277559 ⟹ XP_063133629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277560 ⟹ XP_063133630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,151 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277561 ⟹ XP_063133631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,367 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277562 ⟹ XP_063133632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277563 ⟹ XP_063133633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277564 ⟹ XP_063133634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,151 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277565 ⟹ XP_063133635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,351 - 49,584,828 (+)	NCBI

RefSeq Acc Id:

XM_063277566 ⟹ XP_063133636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	49,498,147 - 49,584,828 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001380678	(Get FASTA)	NCBI Sequence Viewer
	NP_001380679	(Get FASTA)	NCBI Sequence Viewer
	NP_074046	(Get FASTA)	NCBI Sequence Viewer
	XP_063133617	(Get FASTA)	NCBI Sequence Viewer
	XP_063133618	(Get FASTA)	NCBI Sequence Viewer
	XP_063133619	(Get FASTA)	NCBI Sequence Viewer
	XP_063133620	(Get FASTA)	NCBI Sequence Viewer
	XP_063133621	(Get FASTA)	NCBI Sequence Viewer
	XP_063133622	(Get FASTA)	NCBI Sequence Viewer
	XP_063133623	(Get FASTA)	NCBI Sequence Viewer
	XP_063133625	(Get FASTA)	NCBI Sequence Viewer
	XP_063133626	(Get FASTA)	NCBI Sequence Viewer
	XP_063133627	(Get FASTA)	NCBI Sequence Viewer
	XP_063133628	(Get FASTA)	NCBI Sequence Viewer
	XP_063133629	(Get FASTA)	NCBI Sequence Viewer
	XP_063133630	(Get FASTA)	NCBI Sequence Viewer
	XP_063133631	(Get FASTA)	NCBI Sequence Viewer
	XP_063133632	(Get FASTA)	NCBI Sequence Viewer
	XP_063133633	(Get FASTA)	NCBI Sequence Viewer
	XP_063133634	(Get FASTA)	NCBI Sequence Viewer
	XP_063133635	(Get FASTA)	NCBI Sequence Viewer
	XP_063133636	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM14470	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022792
	ENSRNOP00000079920
	ENSRNOP00000093418
	ENSRNOP00000093418.1
	ENSRNOP00000097230
GenBank Protein	Q62763	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_074046 ⟸ NM_022855
- Peptide Label:	isoform 1
- UniProtKB:	Q62763 (UniProtKB/Swiss-Prot), A6IX39 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDNKKKDKDKSDDRMARPSGRSGHSTRGTGSSSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLY TNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFD LCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKAQQVIHIIDFGLAKEY IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT LKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMF DYEYDWIGKQLPTPVGAVQQDPALSSNREAHQHRDKIQQSKNQSADHRAAWDSQQANPHHLRAH LAADRHGGSVQVVSSTNGELNTDDPTAGRSNAPITAPTEVEVMDETKCCCFFKRRKRKTIQRHK hide sequence

Ensembl Acc Id:

ENSRNOP00000022792 ⟸ ENSRNOT00000022792

Ensembl Acc Id:

ENSRNOP00000097230 ⟸ ENSRNOT00000111040

Ensembl Acc Id:

ENSRNOP00000093418 ⟸ ENSRNOT00000103210

Ensembl Acc Id:

ENSRNOP00000079920 ⟸ ENSRNOT00000098391

Ensembl Acc Id:

ENSRNOP00000096330 ⟸ ENSRNOT00000101548

RefSeq Acc Id:	NP_001380679 ⟸ NM_001393750
- Peptide Label:	isoform 2
- UniProtKB:	A6IX40 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001380678 ⟸ NM_001393749
- Peptide Label:	isoform 3
- UniProtKB:	A0A8I6AUP7 (UniProtKB/TrEMBL), A6IX41 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133626 ⟸ XM_063277556
- Peptide Label:	isoform X5
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133617 ⟸ XM_063277547
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3W6 (UniProtKB/TrEMBL), A6IX38 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133627 ⟸ XM_063277557
- Peptide Label:	isoform X6
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133623 ⟸ XM_063277553
- Peptide Label:	isoform X3
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133629 ⟸ XM_063277559
- Peptide Label:	isoform X8
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133633 ⟸ XM_063277563
- Peptide Label:	isoform X11
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133622 ⟸ XM_063277552
- Peptide Label:	isoform X2
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133628 ⟸ XM_063277558
- Peptide Label:	isoform X7
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133625 ⟸ XM_063277555
- Peptide Label:	isoform X4
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133632 ⟸ XM_063277562
- Peptide Label:	isoform X10
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133636 ⟸ XM_063277566
- Peptide Label:	isoform X13
- UniProtKB:	A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133619 ⟸ XM_063277549
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3W6 (UniProtKB/TrEMBL), A6IX38 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133630 ⟸ XM_063277560
- Peptide Label:	isoform X9
- UniProtKB:	A6IX40 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133634 ⟸ XM_063277564
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6AUP7 (UniProtKB/TrEMBL), A6IX41 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133635 ⟸ XM_063277565
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6AUP7 (UniProtKB/TrEMBL), A6IX41 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133618 ⟸ XM_063277548
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3W6 (UniProtKB/TrEMBL), A6IX38 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133631 ⟸ XM_063277561
- Peptide Label:	isoform X9
- UniProtKB:	A6IX40 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133620 ⟸ XM_063277550
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3W6 (UniProtKB/TrEMBL), A6IX38 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133621 ⟸ XM_063277551
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6G3W6 (UniProtKB/TrEMBL), A6IX38 (UniProtKB/TrEMBL), A0A0A0MXY3 (UniProtKB/TrEMBL)

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62763-F1-model_v2	AlphaFold	Q62763	1-448	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621408	AgrOrtholog
BioCyc Gene	G2FUF-7499	BioCyc
Ensembl Genes	ENSRNOG00000016677	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022792	ENTREZGENE
	ENSRNOT00000098391	ENTREZGENE
	ENSRNOT00000103210	ENTREZGENE
	ENSRNOT00000103210.1	UniProtKB/Swiss-Prot
	ENSRNOT00000111040	ENTREZGENE
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/Swiss-Prot
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot
InterPro	Casein_kinase-1_gamma_C	UniProtKB/Swiss-Prot
	CK1_Ser-Thr_kinase	UniProtKB/Swiss-Prot
	Kinase-like_dom_sf	UniProtKB/Swiss-Prot
	Prot_kinase_dom	UniProtKB/Swiss-Prot
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot
	Ser/Thr_kinase_AS	UniProtKB/Swiss-Prot
KEGG Report	rno:64823	UniProtKB/Swiss-Prot
NCBI Gene	64823	ENTREZGENE
PANTHER	CASEIN KINASE-RELATED	UniProtKB/Swiss-Prot
Pfam	CK1gamma_C	UniProtKB/Swiss-Prot
	Pkinase	UniProtKB/Swiss-Prot
PhenoGen	Csnk1g3	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot
	PROTEIN_KINASE_ST	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016677	RatGTEx
SMART	S_TKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56112	UniProtKB/Swiss-Prot
UniProt	A0A0A0MXY3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6APG1_RAT	UniProtKB/TrEMBL
	A0A8I6AUP7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3W6	ENTREZGENE, UniProtKB/TrEMBL
	A6IX38	ENTREZGENE, UniProtKB/TrEMBL
	A6IX39	ENTREZGENE, UniProtKB/TrEMBL
	A6IX40	ENTREZGENE, UniProtKB/TrEMBL
	A6IX41	ENTREZGENE, UniProtKB/TrEMBL
	KC1G3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Csnk1g3	casein kinase 1, gamma 3		casein kinase 1 gamma 3 isoform	Name updated	1299863	APPROVED
2002-08-07	Csnk1g3	casein kinase 1 gamma 3 isoform			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_protein	448 amino acids; 51.4 kDa	727981

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)