Rpl30 (ribosomal protein L30) - Rat Genome Database

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Gene: Rpl30 (ribosomal protein L30) Rattus norvegicus
Analyze
Symbol: Rpl30
Name: ribosomal protein L30
RGD ID: 621201
Description: Enables selenocysteine insertion sequence binding activity. Involved in liver regeneration and positive regulation of selenocysteine incorporation. Located in ribosome. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L30; large ribosomal subunit protein eL30
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,533,420 - 67,536,555 (-)NCBIGRCr8
mRatBN7.2765,648,266 - 65,651,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1036,831,500 - 36,831,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,537,449 - 67,540,584 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,739,181 - 69,742,316 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,604,985 - 69,608,128 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,213,538 - 73,216,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,381,072 - 73,383,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,886,763 - 69,889,656 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,907,492 - 69,910,386 (-)NCBI
Celera762,749,491 - 62,752,384 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
ampicillin  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beryllium sulfate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP,ISO)
haloperidol  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
metronidazole  (EXP)
neomycin  (EXP)
nickel subsulfide  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
testosterone enanthate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Ribosomal protein L30 is a component of the UGA-selenocysteine recoding machinery in eukaryotes. Chavatte L, etal., Nat Struct Mol Biol. 2005 May;12(5):408-16. Epub 2005 Apr 10.
3. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Combined genealogical, mapping, and expression approaches to identify spontaneously hypertensive rat hypertension candidate genes. Hinojos CA, etal., Hypertension 2005 Apr;45(4):698-704. Epub 2005 Feb 14.
6. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
7. Molecular cloning and nucleotide sequences of cDNAs specific for rat liver ribosomal proteins S17 and L30. Nakanishi O, etal., Gene 1985;35(3):289-96.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Phosphorylation of ribosomal protein L30 after herpes simplex virus type 1 infection. Simonin D, etal., Electrophoresis. 1995 May;16(5):854-9.
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:12962325   PMID:15019208   PMID:15489334   PMID:16854843   PMID:19946888   PMID:20458337   PMID:21170055   PMID:21423176   PMID:21700703   PMID:22658674   PMID:22681889   PMID:22720776  
PMID:22871113   PMID:23376485   PMID:23777426   PMID:23979707   PMID:24625528   PMID:25211037   PMID:25957688   PMID:30053369   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Rpl30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,533,420 - 67,536,555 (-)NCBIGRCr8
mRatBN7.2765,648,266 - 65,651,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1036,831,500 - 36,831,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx767,537,449 - 67,540,584 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,739,181 - 69,742,316 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,604,985 - 69,608,128 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,213,538 - 73,216,431 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,381,072 - 73,383,965 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,886,763 - 69,889,656 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1769,907,492 - 69,910,386 (-)NCBI
Celera762,749,491 - 62,752,384 (-)NCBICelera
Cytogenetic Map7q22NCBI
RPL30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38898,041,721 - 98,045,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl898,024,851 - 98,046,469 (-)EnsemblGRCh38hg38GRCh38
GRCh37899,053,949 - 99,057,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,123,118 - 99,126,949 (-)NCBINCBI36Build 36hg18NCBI36
Build 34899,123,118 - 99,126,949NCBI
Celera895,239,859 - 95,243,700 (-)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef894,257,678 - 94,261,492 (-)NCBIHuRef
CHM1_1899,094,763 - 99,098,650 (-)NCBICHM1_1
T2T-CHM13v2.0899,167,205 - 99,171,037 (-)NCBIT2T-CHM13v2.0
Rpl30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,440,649 - 34,443,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,440,651 - 34,443,786 (-)EnsemblGRCm39 Ensembl
GRCm381534,440,505 - 34,443,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,440,505 - 34,443,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv371534,370,260 - 34,373,031 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361534,385,099 - 34,387,811 (-)NCBIMGSCv36mm8
Celera1535,068,334 - 35,071,105 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.33NCBI
Rpl30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,764,814 - 13,767,698 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,764,814 - 13,767,698 (-)NCBIChiLan1.0ChiLan1.0
RPL30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27115,383,567 - 115,388,886 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1890,925,079 - 90,929,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,678,823 - 94,682,726 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1896,863,859 - 96,867,732 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,863,944 - 96,867,526 (-)Ensemblpanpan1.1panPan2
RPL30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113301,263 - 304,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13294,878 - 298,456 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.013449,652 - 453,252 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13449,675 - 453,202 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113293,399 - 296,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013400,918 - 404,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013407,182 - 410,785 (-)NCBIUU_Cfam_GSD_1.0
LOC101963795
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,896,430 - 62,896,892 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364937,942,669 - 7,943,133 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,701,720 - 38,720,780 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1438,702,220 - 38,720,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,705,621 - 41,709,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1892,958,214 - 92,962,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl892,957,814 - 92,962,242 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603947,779,946 - 47,783,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rpl30
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000057587
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)72940968374409683Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73111283276112832Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73429328279293282Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73429328279293282Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73796056982960569Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
634326Hc3Hypercalciuria QTL 32.1urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)74278731487787314Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74322875088228750Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)74486753389867533Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74725178365728867Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat

Markers in Region
PMC152246P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1380,454,484 - 80,454,560UniSTS
Cytogenetic Map7q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 6 6 2 6 10 12 28
Medium 3 41 51 35 17 35 8 11 64 23 13 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000057587   ⟹   ENSRNOP00000054398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)Ensembl
Rnor_6.0 Ensembl773,213,581 - 73,216,251 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)Ensembl
RefSeq Acc Id: NM_022699   ⟹   NP_073190
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,533,420 - 67,536,555 (-)NCBI
mRatBN7.2765,648,266 - 65,651,401 (-)NCBI
Rnor_6.0773,213,538 - 73,216,431 (-)NCBI
Rnor_5.0773,381,072 - 73,383,965 (-)NCBI
RGSC_v3.4769,886,763 - 69,889,656 (-)RGD
Celera762,749,491 - 62,752,384 (-)RGD
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_073190   ⟸   NM_022699
- UniProtKB: P62890 (UniProtKB/Swiss-Prot),   A6HEB4 (UniProtKB/TrEMBL),   F1M3Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054398   ⟸   ENSRNOT00000057587
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62890-F1-model_v2 AlphaFold P62890 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621201 AgrOrtholog
BioCyc Gene G2FUF-33684 BioCyc
Ensembl Genes ENSRNOG00000005975 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000032825 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000033265 UniProtKB/TrEMBL
  ENSRNOG00000068679 Ensembl
  ENSRNOG00055026281 UniProtKB/Swiss-Prot
  ENSRNOG00055030118 UniProtKB/Swiss-Prot
  ENSRNOG00060009874 UniProtKB/Swiss-Prot
  ENSRNOG00060031067 UniProtKB/Swiss-Prot
  ENSRNOG00065006548 UniProtKB/Swiss-Prot
  ENSRNOG00065015829 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000042688.3 UniProtKB/Swiss-Prot
  ENSRNOT00000045014.4 UniProtKB/TrEMBL
  ENSRNOT00000057587.3 UniProtKB/TrEMBL
  ENSRNOT00055045329 UniProtKB/Swiss-Prot
  ENSRNOT00055052255 UniProtKB/Swiss-Prot
  ENSRNOT00060016673 UniProtKB/Swiss-Prot
  ENSRNOT00060053937 UniProtKB/Swiss-Prot
  ENSRNOT00065010113 UniProtKB/Swiss-Prot
  ENSRNOT00065026281 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919868 IMAGE-MGC_LOAD
InterPro L30/L30e/YlxQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L30e-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L30e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100362027 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:64640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72813 IMAGE-MGC_LOAD
NCBI Gene 64640 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L30 UniProtKB/Swiss-Prot
  60S RIBOSOMAL PROTEIN L30 UniProtKB/TrEMBL
  60S RIBOSOMAL PROTEIN L30 UniProtKB/TrEMBL
  PTHR11449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl30 PhenoGen
PROSITE RIBOSOMAL_L30E_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL_L30E_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005975 RatGTEx
  ENSRNOG00000032825 RatGTEx
  ENSRNOG00000033265 RatGTEx
  ENSRNOG00000068679 RatGTEx
  ENSRNOG00055026281 RatGTEx
  ENSRNOG00055030118 RatGTEx
  ENSRNOG00060009874 RatGTEx
  ENSRNOG00060031067 RatGTEx
  ENSRNOG00065006548 RatGTEx
  ENSRNOG00065015829 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QQZ4_RAT UniProtKB/TrEMBL
  A6HEB4 ENTREZGENE, UniProtKB/TrEMBL
  F1M3Q4 ENTREZGENE, UniProtKB/TrEMBL
  P62890 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P04645 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl30  ribosomal protein L30      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rpl30  ribosomal protein L30      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expression is decreased 2.1 fold in SHR compared with WKY rats 1357414
gene_protein 114 amino acids with an Mr of 12,652 634039