Rpl30 (ribosomal protein L30) - Rat Genome Database

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Gene: Rpl30 (ribosomal protein L30) Rattus norvegicus
Analyze
Symbol: Rpl30
Name: ribosomal protein L30
RGD ID: 621201
Description: Enables selenocysteine insertion sequence binding activity. Involved in liver regeneration and positive regulation of selenocysteine incorporation. Located in ribosome. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in herpes simplex. Orthologous to human RPL30 (ribosomal protein L30); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L30; large ribosomal subunit protein eL30
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,533,420 - 67,536,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,465,332 - 67,536,555 (-)EnsemblGRCr8
mRatBN7.2765,648,266 - 65,651,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl142,487,145 - 42,487,429 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx767,537,449 - 67,540,584 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,739,181 - 69,742,316 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,604,985 - 69,608,128 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,213,538 - 73,216,431 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,381,072 - 73,383,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4769,886,763 - 69,889,656 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,749,491 - 62,752,384 (-)NCBICelera
RGSC_v3.1769,907,492 - 69,910,386 (-)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
ampicillin  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beryllium sulfate  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
Butylbenzyl phthalate  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
clozapine  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glyphosate  (EXP,ISO)
haloperidol  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methamphetamine  (EXP)
metronidazole  (EXP)
neomycin  (EXP)
nickel subsulfide  (EXP)
nitrates  (ISO)
nobiletin  (ISO)
ochratoxin A  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenanthrene  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
succimer  (ISO)
testosterone enanthate  (ISO)
titanium dioxide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Ribosomal protein L30 is a component of the UGA-selenocysteine recoding machinery in eukaryotes. Chavatte L, etal., Nat Struct Mol Biol. 2005 May;12(5):408-16. Epub 2005 Apr 10.
3. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Combined genealogical, mapping, and expression approaches to identify spontaneously hypertensive rat hypertension candidate genes. Hinojos CA, etal., Hypertension 2005 Apr;45(4):698-704. Epub 2005 Feb 14.
6. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
7. Molecular cloning and nucleotide sequences of cDNAs specific for rat liver ribosomal proteins S17 and L30. Nakanishi O, etal., Gene 1985;35(3):289-96.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Phosphorylation of ribosomal protein L30 after herpes simplex virus type 1 infection. Simonin D, etal., Electrophoresis. 1995 May;16(5):854-9.
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:12962325   PMID:15019208   PMID:15489334   PMID:16854843   PMID:19946888   PMID:20458337   PMID:21170055   PMID:21423176   PMID:21700703   PMID:22658674   PMID:22681889   PMID:22720776  
PMID:22871113   PMID:23376485   PMID:23777426   PMID:23979707   PMID:24625528   PMID:25211037   PMID:25957688   PMID:30053369   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Rpl30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,533,420 - 67,536,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,465,332 - 67,536,555 (-)EnsemblGRCr8
mRatBN7.2765,648,266 - 65,651,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl142,487,145 - 42,487,429 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx767,537,449 - 67,540,584 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,739,181 - 69,742,316 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,604,985 - 69,608,128 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,213,538 - 73,216,431 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,381,072 - 73,383,965 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4769,886,763 - 69,889,656 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,749,491 - 62,752,384 (-)NCBICelera
RGSC_v3.1769,907,492 - 69,910,386 (-)NCBI
Cytogenetic Map7q22NCBI
RPL30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38898,041,721 - 98,045,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl898,024,851 - 98,046,469 (-)Ensemblhg38GRCh38
GRCh37899,053,949 - 99,057,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,123,118 - 99,126,949 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34899,123,118 - 99,126,949NCBI
Celera895,239,859 - 95,243,700 (-)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef894,257,678 - 94,261,492 (-)NCBIHuRef
CHM1_1899,094,763 - 99,098,650 (-)NCBICHM1_1
T2T-CHM13v2.0899,167,205 - 99,171,037 (-)NCBIT2T-CHM13v2.0
Rpl30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,440,649 - 34,443,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,440,651 - 34,443,786 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381534,440,505 - 34,443,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,440,505 - 34,443,640 (-)Ensemblmm10GRCm38
MGSCv371534,370,260 - 34,373,031 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361534,385,099 - 34,387,811 (-)NCBIMGSCv36mm8
Celera1535,068,334 - 35,071,105 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.33NCBI
Rpl30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,764,814 - 13,767,698 (-)Ensembl
ChiLan1.0NW_00495541713,764,814 - 13,767,698 (-)NCBIChiLan1.0ChiLan1.0
RPL30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27115,383,567 - 115,388,886 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1890,925,079 - 90,929,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,678,823 - 94,682,726 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1896,863,859 - 96,867,732 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,863,944 - 96,867,526 (-)EnsemblpanPan2panpan1.1
RPL30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113301,263 - 304,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13294,878 - 298,456 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.013449,652 - 453,252 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13449,675 - 453,202 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113293,399 - 296,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013400,918 - 404,509 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013407,182 - 410,785 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101963795
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629262,896,430 - 62,896,892 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364937,942,669 - 7,943,133 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,701,720 - 38,720,780 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1438,702,220 - 38,720,420 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,705,621 - 41,709,159 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1892,958,214 - 92,962,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl892,957,814 - 92,962,242 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603947,779,946 - 47,783,983 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl30
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11208,140,642 - 208,143,715 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl30
27 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000057587
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
PMC152246P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1380,454,484 - 80,454,560UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 12 73 186 119 114 71 98 71 12 402 216 11 153 85 104 43 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000045014   ⟹   ENSRNOP00000042633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,487,145 - 42,487,429 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000057587   ⟹   ENSRNOP00000054398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1053,421,629 - 53,421,784 (-)Ensembl
Rnor_6.0 Ensembl773,213,581 - 73,216,251 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl765,645,991 - 65,651,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169366   ⟹   ENSRNOP00000112055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,465,332 - 67,536,555 (-)Ensembl
RefSeq Acc Id: NM_022699   ⟹   NP_073190
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,533,420 - 67,536,555 (-)NCBI
mRatBN7.2765,648,266 - 65,651,401 (-)NCBI
Rnor_6.0773,213,538 - 73,216,431 (-)NCBI
Rnor_5.0773,381,072 - 73,383,965 (-)NCBI
RGSC_v3.4769,886,763 - 69,889,656 (-)RGD
Celera762,749,491 - 62,752,384 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_073190 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58471 (Get FASTA)   NCBI Sequence Viewer  
  EDM16422 (Get FASTA)   NCBI Sequence Viewer  
  EDM16423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072453.1
  ENSRNOP00000112055
GenBank Protein P62890 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_073190   ⟸   NM_022699
- UniProtKB: P62890 (UniProtKB/Swiss-Prot),   A6HEB4 (UniProtKB/TrEMBL),   F1M3Q4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054398   ⟸   ENSRNOT00000057587
Ensembl Acc Id: ENSRNOP00000042633   ⟸   ENSRNOT00000045014
Ensembl Acc Id: ENSRNOP00000112055   ⟸   ENSRNOT00000169366
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62890-F1-model_v2 AlphaFold P62890 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621201 AgrOrtholog
BioCyc Gene G2FUF-33684 BioCyc
Ensembl Genes ENSRNOG00000005975 Ensembl
  ENSRNOG00000032825 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000033265 Ensembl
  ENSRNOG00000068679 Ensembl
  ENSRNOG00000086232 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000042688.3 UniProtKB/Swiss-Prot
  ENSRNOT00000169366 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919868 IMAGE-MGC_LOAD
InterPro L30/L30e/YlxQ UniProtKB/Swiss-Prot
  L30e-like UniProtKB/Swiss-Prot
  Ribosomal_L30e UniProtKB/Swiss-Prot
  Ribosomal_L30e_CS UniProtKB/Swiss-Prot
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot
KEGG Report rno:64640 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72813 IMAGE-MGC_LOAD
NCBI Gene 64640 ENTREZGENE
PANTHER PTHR11449 UniProtKB/Swiss-Prot
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot
PhenoGen Rpl30 PhenoGen
PROSITE RIBOSOMAL_L30E_1 UniProtKB/Swiss-Prot
  RIBOSOMAL_L30E_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005975 RatGTEx
  ENSRNOG00000032825 RatGTEx
  ENSRNOG00000033265 RatGTEx
  ENSRNOG00000068679 RatGTEx
  ENSRNOG00000086232 RatGTEx
RNAcentral URS00022AEE04 RNACentral
  URS00022B639B RNACentral
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot
UniProt A0ABK0M4H8_RAT UniProtKB/TrEMBL
  A6HEB4 ENTREZGENE, UniProtKB/TrEMBL
  F1M3Q4 ENTREZGENE
  P62890 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P04645 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl30  ribosomal protein L30      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rpl30  ribosomal protein L30      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expression is decreased 2.1 fold in SHR compared with WKY rats 1357414
gene_protein 114 amino acids with an Mr of 12,652 634039