Rpl13 (ribosomal protein L13) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rpl13 (ribosomal protein L13) Rattus norvegicus
Analyze
Symbol: Rpl13
Name: ribosomal protein L13
RGD ID: 621179
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in liver regeneration. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L13; large ribosomal subunit protein eL13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl13-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,062,442 - 68,065,065 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1968,062,493 - 68,065,059 (+)EnsemblGRCr8
mRatBN7.21951,153,990 - 51,156,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,153,924 - 51,163,014 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl3147,354,348 - 147,355,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1957,948,099 - 57,950,650 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,628,911 - 58,631,462 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,846,700 - 60,849,251 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,917,489 - 55,920,040 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,917,736 - 55,919,996 (+)Ensemblrn6Rnor6.0
Rnor_5.01966,622,824 - 66,625,375 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41953,437,633 - 53,440,184 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1950,389,417 - 50,391,968 (+)NCBICelera
RGSC_v3.11953,442,513 - 53,445,059 (+)NCBI
Cytogenetic Map19q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
Cuprizon  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
genistein  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
haloperidol  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nimesulide  (EXP)
ochratoxin A  (EXP,ISO)
omeprazole  (EXP)
ozone  (EXP,ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
PhIP  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
Propiverine  (EXP)
rac-lactic acid  (ISO)
regorafenib  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. The primary structure of rat ribosomal protein L13. Olvera J and Wool IG, Biochem Biophys Res Commun 1994 May 30;201(1):102-7.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12962325   PMID:15489334   PMID:19946888   PMID:21630459   PMID:22658674   PMID:24625528   PMID:26902285   PMID:29476059   PMID:30053369   PMID:31630789   PMID:35352799  


Genomics

Comparative Map Data
Rpl13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,062,442 - 68,065,065 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1968,062,493 - 68,065,059 (+)EnsemblGRCr8
mRatBN7.21951,153,990 - 51,156,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,153,924 - 51,163,014 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl3147,354,348 - 147,355,972 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1957,948,099 - 57,950,650 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,628,911 - 58,631,462 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,846,700 - 60,849,251 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,917,489 - 55,920,040 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,917,736 - 55,919,996 (+)Ensemblrn6Rnor6.0
Rnor_5.01966,622,824 - 66,625,375 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41953,437,633 - 53,440,184 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1950,389,417 - 50,391,968 (+)NCBICelera
RGSC_v3.11953,442,513 - 53,445,059 (+)NCBI
Cytogenetic Map19q12NCBI
RPL13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,560,657 - 89,566,829 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,560,637 - 89,567,834 (+)Ensemblhg38GRCh38
GRCh371689,627,065 - 89,633,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,154,591 - 88,157,349 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341688,154,631 - 88,157,349NCBI
Celera1674,690,596 - 74,693,354 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,322,167 - 75,328,473 (+)NCBIHuRef
CHM1_11691,038,335 - 91,044,507 (+)NCBICHM1_1
T2T-CHM13v2.01695,641,207 - 95,647,429 (+)NCBIT2T-CHM13v2.0
Rpl13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,829,089 - 123,831,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,829,089 - 123,831,983 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388123,102,350 - 123,105,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,102,350 - 123,105,244 (+)Ensemblmm10GRCm38
MGSCv378125,626,250 - 125,629,144 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368125,988,506 - 125,991,330 (+)NCBIMGSCv36mm8
Celera8127,339,636 - 127,342,528 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.05NCBI
Rpl13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,149,438 - 3,152,210 (+)Ensembl
ChiLan1.0NW_0049555413,149,438 - 3,152,210 (+)NCBIChiLan1.0ChiLan1.0
RPL13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,343,564 - 99,346,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,261,198 - 105,263,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,312,241 - 70,314,956 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,920,347 - 89,923,535 (+)NCBIPanPan1.1PanPan1.1panPan2
RPL13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,978,424 - 63,980,698 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,978,424 - 63,980,603 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha563,990,572 - 63,992,855 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0564,205,791 - 64,208,064 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,205,791 - 64,207,960 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,225,707 - 64,227,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,063,180 - 64,065,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,470,008 - 64,472,281 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,683,827 - 24,687,465 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641437,731 - 440,999 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936641437,684 - 441,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16410,923 - 413,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26517,791 - 520,269 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,918,926 - 74,921,402 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666047587,113 - 589,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746339,103 - 341,828 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624746339,103 - 341,900 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11742,723,871 - 42,726,445 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:28
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000020635
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X78327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020635   ⟹   ENSRNOP00000020635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1968,062,493 - 68,065,059 (+)Ensembl
mRatBN7.2 Ensembl1951,154,033 - 51,163,014 (+)Ensembl
Rnor_6.0 Ensembl1955,917,736 - 55,919,996 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109934   ⟹   ENSRNOP00000087388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1951,153,924 - 51,156,539 (+)Ensembl
RefSeq Acc Id: NM_031101   ⟹   NP_112363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,062,514 - 68,065,065 (+)NCBI
mRatBN7.21951,153,990 - 51,156,541 (+)NCBI
Rnor_6.01955,917,489 - 55,920,040 (+)NCBI
Rnor_5.01966,622,824 - 66,625,375 (+)NCBI
RGSC_v3.41953,437,633 - 53,440,184 (+)RGD
Celera1950,389,417 - 50,391,968 (+)RGD
Sequence:
RefSeq Acc Id: XM_063278310   ⟹   XP_063134380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,062,442 - 68,065,065 (+)NCBI
Protein Sequences
Protein RefSeqs NP_112363 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134380 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58143 (Get FASTA)   NCBI Sequence Viewer  
  CAA55130 (Get FASTA)   NCBI Sequence Viewer  
  EDL92781 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000020635
  ENSRNOP00000020635.3
GenBank Protein P41123 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_112363   ⟸   NM_031101
- UniProtKB: P41123 (UniProtKB/Swiss-Prot),   D3ZD02 (UniProtKB/TrEMBL),   A6IZV2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020635   ⟸   ENSRNOT00000020635
Ensembl Acc Id: ENSRNOP00000087388   ⟸   ENSRNOT00000109934
RefSeq Acc Id: XP_063134380   ⟸   XM_063278310
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P41123-F1-model_v2 AlphaFold P41123 1-211 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621179 AgrOrtholog
BioCyc Gene G2FUF-5349 BioCyc
Ensembl Genes ENSRNOG00000015335 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000029227 Ensembl
Ensembl Transcript ENSRNOT00000020635 ENTREZGENE
  ENSRNOT00000020635.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919851 IMAGE-MGC_LOAD
InterPro Ribosomal_L13e UniProtKB/Swiss-Prot
  Ribosomal_L13e_CS UniProtKB/Swiss-Prot
KEGG Report rno:81765 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72796 IMAGE-MGC_LOAD
NCBI Gene 81765 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L13 UniProtKB/Swiss-Prot
  PTHR11722 UniProtKB/Swiss-Prot
Pfam Ribosomal_L13e UniProtKB/Swiss-Prot
PhenoGen Rpl13 PhenoGen
PROSITE RIBOSOMAL_L13E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000015335 RatGTEx
  ENSRNOG00000029227 RatGTEx
UniProt A6IZV2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZD02 ENTREZGENE
  P41123 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl13  ribosomal protein L13      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl13  ribosomal protein L13      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 210 amino acids 633815
gene_transcript 870 nucleotides 633815