Rps28 (ribosomal protein S28) - Rat Genome Database

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Gene: Rps28 (ribosomal protein S28) Rattus norvegicus
Analyze
Symbol: Rps28 (Ensembl: Rps28-ps1)
Name: ribosomal protein S28 (Ensembl:ribosomal protein S28, pseudogene 1)
RGD ID: 621046
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S28; LOC691531; small ribosomal subunit protein eS28
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps28-ps1   Rps28-ps3  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,309,964 - 15,311,333 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl715,309,964 - 15,311,333 (-)EnsemblGRCr8
GRCr8 Ensembl1672,591,164 - 72,591,373 (+)EnsemblGRCr8
GRCr8 Ensembl1673,511,032 - 73,511,341 (+)EnsemblGRCr8
mRatBN7.2714,607,801 - 14,609,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1665,888,416 - 65,888,625 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,481,640 - 19,483,009 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,682,071 - 18,683,440 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)Ensemblrn6Rnor6.0
Rnor_5.0718,859,671 - 18,861,040 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4716,319,719 - 16,321,088 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera713,505,200 - 13,506,569 (-)NCBICelera
RGSC_v3.1716,319,739 - 16,321,069 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
deoxynivalenol  (ISO)
dihydroartemisinin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP)
isoniazide  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methylparaben  (ISO)
nitrofen  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctanoic acid  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tetrahydropalmatine  (ISO)
toluene  (EXP)
tremolite asbestos  (ISO)
tungsten  (ISO)
ursodeoxycholic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein S28. Chan YL, etal., Biochem Biophys Res Commun 1991 Aug 30;179(1):314-8.
3. The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8706699   PMID:15632090   PMID:15883184   PMID:18697920   PMID:20458337   PMID:22658674   PMID:22681889   PMID:23376485   PMID:24930395   PMID:24942156   PMID:25957688   PMID:35352799  


Genomics

Comparative Map Data
Rps28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8715,309,964 - 15,311,333 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl715,309,964 - 15,311,333 (-)EnsemblGRCr8
GRCr8 Ensembl1672,591,164 - 72,591,373 (+)EnsemblGRCr8
GRCr8 Ensembl1673,511,032 - 73,511,341 (+)EnsemblGRCr8
mRatBN7.2714,607,801 - 14,609,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1665,888,416 - 65,888,625 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1672,085,564 - 72,085,888 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0719,481,640 - 19,483,009 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01670,740,007 - 70,740,331 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0718,682,071 - 18,683,440 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)Ensemblrn6Rnor6.0
Rnor_5.0718,859,671 - 18,861,040 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4716,319,719 - 16,321,088 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera713,505,200 - 13,506,569 (-)NCBICelera
RGSC_v3.1716,319,739 - 16,321,069 (-)NCBI
Cytogenetic Map7q13NCBI
RPS28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38198,321,496 - 8,323,340 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl198,320,900 - 8,323,567 (+)Ensemblhg38GRCh38
GRCh37198,386,380 - 8,388,224 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36198,292,384 - 8,293,280 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34198,292,383 - 8,293,278NCBI
Celera198,242,910 - 8,243,806 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef198,040,421 - 8,041,317 (+)NCBIHuRef
CHM1_1198,385,886 - 8,386,782 (+)NCBICHM1_1
T2T-CHM13v2.0198,308,015 - 8,309,851 (+)NCBIT2T-CHM13v2.0
Rps28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,042,010 - 34,043,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,038,001 - 34,043,536 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381733,823,036 - 33,824,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,819,027 - 33,824,562 (-)Ensemblmm10GRCm38
MGSCv371733,959,981 - 33,961,443 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361733,429,010 - 33,430,453 (-)NCBIMGSCv36mm8
Celera1736,580,449 - 36,581,911 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
Rps28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555631,073,774 - 1,074,077 (-)Ensembl
ChiLan1.0NW_0049555631,073,556 - 1,074,149 (-)NCBIChiLan1.0ChiLan1.0
RPS28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,989,047 - 12,990,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11912,105,775 - 12,106,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,607,197 - 7,608,113 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1198,458,321 - 8,459,250 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl198,458,321 - 8,459,250 (+)EnsemblpanPan2panpan1.1
RPS28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12052,901,953 - 52,903,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2052,902,031 - 52,903,244 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2052,703,341 - 52,704,584 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02053,429,906 - 53,431,149 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2053,429,936 - 53,431,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12052,632,374 - 52,633,617 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,077,846 - 53,079,089 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02053,309,413 - 53,310,656 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118212,679,261 - 212,680,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365885,154,615 - 5,155,522 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365885,154,614 - 5,155,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,953,708 - 70,954,775 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1270,953,706 - 70,954,862 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2271,320,395 - 71,321,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.167,684,720 - 7,685,597 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607412,604,390 - 12,605,303 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248281,116,157 - 1,116,686 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248281,116,016 - 1,116,908 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps28
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11158,591,732 - 158,593,110 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps28
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:76
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000045955, ENSRNOT00000068323
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH129344  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2714,607,447 - 14,607,643 (+)MAPPERmRatBN7.2
Rnor_6.0718,681,718 - 18,681,913NCBIRnor6.0
Rnor_5.0718,859,318 - 18,859,513UniSTSRnor5.0
RGSC_v3.4716,319,366 - 16,319,561UniSTSRGSC3.4
Celera713,504,847 - 13,505,042UniSTS
Cytogenetic Map7q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001105730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025380   ⟹   ENSRNOP00000088092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1673,511,032 - 73,511,341 (+)Ensembl
mRatBN7.2 Ensembl1666,798,297 - 66,808,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000045955   ⟹   ENSRNOP00000039276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1672,591,164 - 72,591,373 (+)Ensembl
mRatBN7.2 Ensembl1665,888,416 - 65,888,625 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000068323   ⟹   ENSRNOP00000060568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl715,309,964 - 15,311,333 (-)Ensembl
mRatBN7.2 Ensembl714,607,801 - 14,609,170 (-)Ensembl
Rnor_6.0 Ensembl718,682,071 - 18,683,440 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114114   ⟹   ENSRNOP00000078298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1666,797,875 - 66,808,775 (+)Ensembl
RefSeq Acc Id: NM_001105730   ⟹   NP_001099200
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8715,309,964 - 15,311,333 (-)NCBI
mRatBN7.2714,607,801 - 14,609,170 (-)NCBI
Rnor_6.0718,682,071 - 18,683,440 (-)NCBI
Rnor_5.0718,859,671 - 18,861,040 (-)NCBI
RGSC_v3.4716,319,719 - 16,321,088 (-)RGD
Celera713,505,200 - 13,506,569 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099200 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86618 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000060568
  ENSRNOP00000060568.1
  ENSRNOP00000078298.1
  ENSRNOP00000088092.1
GenBank Protein P62859 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001099200   ⟸   NM_001105730
- UniProtKB: P62859 (UniProtKB/Swiss-Prot),   A6KQI3 (UniProtKB/TrEMBL),   A0A0A0MY14 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060568   ⟸   ENSRNOT00000068323
Ensembl Acc Id: ENSRNOP00000078298   ⟸   ENSRNOT00000114114
Ensembl Acc Id: ENSRNOP00000088092   ⟸   ENSRNOT00000025380
Ensembl Acc Id: ENSRNOP00000039276   ⟸   ENSRNOT00000045955

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62859-F1-model_v2 AlphaFold P62859 1-69 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695088
Promoter ID:EPDNEW_R5612
Type:single initiation site
Name:Rps28_1
Description:ribosomal protein S28
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0718,683,433 - 18,683,493EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621046 AgrOrtholog
BioCyc Gene G2FUF-34707 BioCyc
Ensembl Genes ENSRNOG00000042886 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000046342 Ensembl
  ENSRNOG00000049442 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025380.7 UniProtKB/Swiss-Prot
  ENSRNOT00000068323 ENTREZGENE
  ENSRNOT00000068323.2 UniProtKB/Swiss-Prot
  ENSRNOT00000114114.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.50.140 UniProtKB/Swiss-Prot
InterPro NA-bd_OB-fold UniProtKB/Swiss-Prot
  Ribosomal_S28e UniProtKB/Swiss-Prot
  Ribosomal_S28e_CS UniProtKB/Swiss-Prot
KEGG Report rno:691531 UniProtKB/Swiss-Prot
NCBI Gene 691531 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S28 UniProtKB/Swiss-Prot
  PTHR10769 UniProtKB/Swiss-Prot
Pfam Ribosomal_S28e UniProtKB/Swiss-Prot
PhenoGen Rps28 PhenoGen
PROSITE RIBOSOMAL_S28E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000042886 RatGTEx
  ENSRNOG00000046342 RatGTEx
  ENSRNOG00000049442 RatGTEx
Superfamily-SCOP SSF50249 UniProtKB/Swiss-Prot
UniProt A0A0A0MY14 ENTREZGENE, UniProtKB/TrEMBL
  A6KQI3 ENTREZGENE, UniProtKB/TrEMBL
  P62859 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P25112 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-01 Rps28  ribosomal protein S28  LOC691531  similar to 40S ribosomal protein S28  Data merged from RGD:1582783 737654 APPROVED
2006-11-19 LOC691531  similar to 40S ribosomal protein S28      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-02-26 Rps28  ribosomal protein S28      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rps28  ribosomal protein S28      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 69 amino acids and a molecular weight of 7,836 634041