Rps20 (ribosomal protein S20) - Rat Genome Database

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Gene: Rps20 (ribosomal protein S20) Rattus norvegicus
Analyze
Symbol: Rps20 (Ensembl: Rps20-ps10)
Name: ribosomal protein S20 (Ensembl:ribosomal protein S20, pseudogene 10)
RGD ID: 621037
Description: Predicted to enable MDM2/MDM4 family protein binding activity and ubiquitin ligase inhibitor activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in positive regulation of signal transduction by p53 class mediator. Part of cytosolic small ribosomal subunit. Orthologous to human RPS20 (ribosomal protein S20); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S20; MGC72939; small ribosomal subunit protein uS10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps20-ps10   Rps20-ps11   Rps20-ps12   Rps20l5  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,616,687 - 21,618,068 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl521,616,692 - 21,618,068 (-)EnsemblGRCr8
GRCr8 Ensembl342,839,965 - 43,095,621 (+)EnsemblGRCr8
GRCr8 Ensembl94,360,356 - 4,396,211 (-)EnsemblGRCr8
mRatBN7.2516,819,095 - 16,820,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5155,541,742 - 155,542,269 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl516,819,304 - 16,820,475 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx519,060,230 - 19,061,611 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,658,718 - 20,660,099 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,410,210 - 20,411,591 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,706,052 - 16,707,214 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,706,082 - 16,706,909 (-)Ensemblrn6Rnor6.0
Rnor_5.0521,486,034 - 21,487,196 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4517,119,797 - 17,120,959 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera516,183,218 - 16,184,380 (-)NCBICelera
RGSC_v3.1517,119,812 - 17,120,942 (-)NCBI
Cytogenetic Map5q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
alpha-Zearalanol  (EXP)
amino acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
brequinar  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
decabromodiphenyl ether  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furfural  (ISO)
genistein  (ISO)
glafenine  (EXP)
hydrogen sulfide  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
L-methionine  (ISO)
methylparaben  (ISO)
miconazole  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
omeprazole  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
pyrimidifen  (ISO)
pyrogallol  (ISO)
rotenone  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tolcapone  (EXP)
torin 1  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein S20. Chan YL and Wool IG, Biochim Biophys Acta 1990 May 24;1049(1):93-5.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Identification and characterization of proteins that selectively interact with the LHR mRNA binding protein (LRBP) in rat ovaries. Wang L, etal., Biochim Biophys Acta. 2010 May;1803(5):591-7. doi: 10.1016/j.bbamcr.2010.02.003. Epub 2010 Feb 16.
Additional References at PubMed
PMID:8706699   PMID:12477932   PMID:15489334   PMID:15883184   PMID:16452087   PMID:16854843   PMID:19946888   PMID:20458337   PMID:22658674   PMID:22681889   PMID:22871113   PMID:23376485  
PMID:23979707   PMID:24625528   PMID:24930395   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rps20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,616,687 - 21,618,068 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl521,616,692 - 21,618,068 (-)EnsemblGRCr8
GRCr8 Ensembl342,839,965 - 43,095,621 (+)EnsemblGRCr8
GRCr8 Ensembl94,360,356 - 4,396,211 (-)EnsemblGRCr8
mRatBN7.2516,819,095 - 16,820,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5155,541,742 - 155,542,269 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl516,819,304 - 16,820,475 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx519,060,230 - 19,061,611 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0520,658,718 - 20,660,099 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0520,410,210 - 20,411,591 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0516,706,052 - 16,707,214 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,706,082 - 16,706,909 (-)Ensemblrn6Rnor6.0
Rnor_5.0521,486,034 - 21,487,196 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4517,119,797 - 17,120,959 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera516,183,218 - 16,184,380 (-)NCBICelera
RGSC_v3.1517,119,812 - 17,120,942 (-)NCBI
Cytogenetic Map5q12NCBI
RPS20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,067,254 - 56,074,506 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,067,254 - 56,074,510 (-)Ensemblhg38GRCh38
GRCh37856,979,813 - 56,987,065 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,148,167 - 57,149,623 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34857,148,168 - 57,149,623NCBI
Celera852,972,573 - 52,978,977 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,448,024 - 52,454,627 (-)NCBIHuRef
CHM1_1857,032,188 - 57,038,581 (-)NCBICHM1_1
T2T-CHM13v2.0856,444,256 - 56,451,508 (-)NCBIT2T-CHM13v2.0
Rps20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3943,831,334 - 3,835,600 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl43,831,334 - 3,835,665 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3843,831,584 - 3,835,655 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl43,831,334 - 3,835,665 (-)Ensemblmm10GRCm38
MGSCv3743,761,620 - 3,762,747 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3643,761,620 - 3,762,747 (-)NCBIMGSCv36mm8
Celera43,790,149 - 3,791,280 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.14NCBI
Rps20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545415,151,065 - 15,152,301 (-)Ensembl
ChiLan1.0NW_00495545415,151,065 - 15,152,301 (-)NCBIChiLan1.0ChiLan1.0
RPS20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2771,731,012 - 71,732,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1847,455,398 - 47,457,097 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0852,519,658 - 52,521,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1849,890,269 - 49,891,806 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl849,886,952 - 49,891,806 (-)EnsemblpanPan2panpan1.1
RPS20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1297,488,481 - 7,489,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha297,801,137 - 7,802,503 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0297,562,721 - 7,564,084 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl297,402,178 - 7,564,085 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1297,576,107 - 7,577,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0297,708,970 - 7,710,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0297,985,835 - 7,987,201 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
RPS20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,762,209 - 75,769,955 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1475,762,209 - 75,763,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,679,936 - 82,681,176 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,108,532 - 52,109,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl852,108,568 - 52,110,016 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603989,689,679 - 89,691,170 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248863,981,899 - 3,985,261 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248863,981,885 - 3,983,243 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps20
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1772,894,476 - 72,895,672 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps20
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:122
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000011314, ENSRNOT00000041813
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)51297048025683802Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat

Markers in Region
RH135121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2516,819,177 - 16,819,364 (+)MAPPERmRatBN7.2
Rnor_6.0516,705,917 - 16,706,103NCBIRnor6.0
Rnor_5.0521,485,899 - 21,486,085UniSTSRnor5.0
RGSC_v3.4517,119,662 - 17,119,848UniSTSRGSC3.4
Celera516,183,083 - 16,183,269UniSTS
RH 3.4 Map590.7UniSTS
Cytogenetic Map5q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001007603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011314   ⟹   ENSRNOP00000011314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl521,616,692 - 21,618,068 (-)Ensembl
mRatBN7.2 Ensembl516,819,304 - 16,820,475 (-)Ensembl
Rnor_6.0 Ensembl516,706,082 - 16,706,909 (-)Ensembl
RefSeq Acc Id: NM_001007603   ⟹   NP_001007604
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8521,616,687 - 21,618,068 (-)NCBI
mRatBN7.2516,819,095 - 16,820,476 (-)NCBI
Rnor_6.0516,706,052 - 16,707,214 (-)NCBI
Rnor_5.0521,486,034 - 21,487,196 (-)NCBI
RGSC_v3.4517,119,797 - 17,120,959 (-)RGD
Celera516,183,218 - 16,184,380 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007604 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11609 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011314
  ENSRNOP00000011314.7
  ENSRNOP00000065886.1
  ENSRNOP00000066077.1
  ENSRNOP00000069127.1
GenBank Protein P60868 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007604   ⟸   NM_001007603
- UniProtKB: P60868 (UniProtKB/Swiss-Prot),   A6JFL5 (UniProtKB/TrEMBL),   A0A0H2UHG7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011314   ⟸   ENSRNOT00000011314
Protein Domains
Small ribosomal subunit protein uS10

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60868-F1-model_v2 AlphaFold P60868 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621037 AgrOrtholog
BioCyc Gene G2FUF-42120 BioCyc
Ensembl Genes ENSRNOG00000008555 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000029627 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000030345 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000071148 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011314 ENTREZGENE
  ENSRNOT00000011314.8 UniProtKB/Swiss-Prot
  ENSRNOT00000040481.6 UniProtKB/Swiss-Prot
  ENSRNOT00000041813.6 UniProtKB/Swiss-Prot
  ENSRNOT00000051449.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.600 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6891327 IMAGE-MGC_LOAD
InterPro Ribosomal_S10 UniProtKB/Swiss-Prot
  Ribosomal_S10_CS UniProtKB/Swiss-Prot
  Ribosomal_S10_dom UniProtKB/Swiss-Prot
  Ribosomal_S10_dom_sf UniProtKB/Swiss-Prot
  Ribosomal_S10_euk/arc UniProtKB/Swiss-Prot
KEGG Report rno:122772 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72939 IMAGE-MGC_LOAD
NCBI Gene 122772 ENTREZGENE
PANTHER PTHR11700 UniProtKB/Swiss-Prot
Pfam Ribosomal_S10 UniProtKB/Swiss-Prot
PhenoGen Rps20 PhenoGen
PRINTS RIBOSOMALS10 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S10 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008555 RatGTEx
  ENSRNOG00000029627 RatGTEx
  ENSRNOG00000030345 RatGTEx
  ENSRNOG00000071148 RatGTEx
SMART Ribosomal_S10 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54999 UniProtKB/Swiss-Prot
UniProt A0A0H2UHG7 ENTREZGENE, UniProtKB/TrEMBL
  A6JFL5 ENTREZGENE, UniProtKB/TrEMBL
  P60868 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P17075 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rps20  ribosomal protein S20      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rps20  ribosomal protein S20      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other 16-19 copies of the gene 634014
gene_protein 119 amino acids and has a molecular weight of 13,364 634014