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Gene: Shank1 (SH3 and multiple ankyrin repeat domains 1) Rattus norvegicus

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Symbol:

Shank1

Name:

SH3 and multiple ankyrin repeat domains 1

RGD ID:

621011

Description:

Enables several functions, including protein domain specific binding activity; scaffold protein binding activity; and signaling receptor binding activity. Involved in positive regulation of dendritic spine development; protein-containing complex assembly; and synapse maturation. Located in dendritic spine; postsynaptic density; and postsynaptic membrane. Orthologous to human SHANK1 (SH3 and multiple ankyrin repeat domains 1); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GKAP/SAPAP interacting protein; GKAP/SAPAP-interacting protein; SAPAP-interacting protein synamon; SH3 and multiple ankyrin repeat domains protein 1; SH3/ankyrin domain gene 1; Shank1a; somatostatin receptor-interacting protein; SPANK-1; Spank1; SSTR-interacting protein; Sstrip; synamon

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SHANK1 (SH3 and multiple ankyrin repeat domains 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Shank1 (SH3 and multiple ankyrin repeat domains 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	shank1 (SH3 and multiple ankyrin repeat domains 1)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	shank1 (SH3 and multiple ankyrin repeat domains 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	shn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	shn-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prosap	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prosap	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shank1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shank1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	103,944,416 - 103,993,887 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	103,944,813 - 103,992,356 (+)	Ensembl				GRCr8
mRatBN7.2	1	94,807,879 - 94,857,356 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	94,808,276 - 94,855,824 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	100,193,688 - 100,241,225 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	108,666,330 - 108,713,869 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	101,956,762 - 102,004,293 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	100,297,137 - 100,344,377 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	100,297,152 - 100,344,377 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	101,362,243 - 101,410,338 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	94,791,887 - 94,840,584 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	89,071,051 - 89,118,344 (+)	NCBI		Celera
RGSC_v3.1	1	94,872,463 - 94,918,294 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

anxiety disorder (ISO)

autistic disorder (ISO)

developmental and epileptic encephalopathy 11 (ISO)

developmental coordination disorder (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

renal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

androgen antagonist (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

Butylparaben (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cannabigerol (ISO)

copper atom (EXP)

copper(0) (EXP)

diazinon (ISO)

enzacamene (EXP)

ethanol (ISO)

ethylbenzene (ISO)

ethylparaben (ISO)

fenamidone (ISO)

fenvalerate (EXP)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

lead(0) (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

okadaic acid (ISO)

oxybenzone (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

potassium dichromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thiram (ISO)

titanium dioxide (ISO)

toluene (ISO)

trichloroethene (EXP,ISO)

triclosan (ISO)

triptonide (ISO)

valproic acid (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (IEA,ISO)

AMPA selective glutamate receptor signaling pathway (ISO,ISS)

associative learning (IBA,IEA,ISO,ISS)

cell differentiation (IEA)

dendritic spine morphogenesis (IEA,ISO,ISS)

determination of affect (IEA,ISO)

habituation (IEA,ISO)

long-term memory (IEA,ISO,ISS)

maintenance of postsynaptic density structure (IEA)

modulation of chemical synaptic transmission (IEA,ISO)

negative regulation of actin filament bundle assembly (ISO,ISS)

nervous system development (IEA)

neuromuscular process controlling balance (IEA,ISO,ISS)

olfactory behavior (IEA,ISO)

positive regulation of dendritic spine development (IDA)

positive regulation of excitatory postsynaptic potential (IEA,ISO,ISS)

protein localization to synapse (IEA,ISO,ISS)

protein-containing complex assembly (IDA)

righting reflex (IEA,ISO)

social behavior (IEA,ISO)

synapse maturation (IDA)

synapse organization (IBA,IEA)

vocalization behavior (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (TAS)

dendrite (IEA,ISO,NAS)

dendritic spine (IBA,IDA,IEA,ISO)

excitatory synapse (IEA,ISO,ISS)

glutamatergic synapse (IEA,ISO)

membrane (IEA,ISO)

neuron projection (IEA,ISO,ISS)

plasma membrane (IEA,ISO,ISS)

postsynaptic density (IBA,IDA,IEA,ISO,ISS)

postsynaptic membrane (IDA,IEA,ISO)

Schaffer collateral - CA1 synapse (IEA,ISO)

synapse (IDA,IEA)

Molecular Function

ankyrin repeat binding (IPI)

G protein-coupled receptor binding (IPI)

identical protein binding (IPI)

ionotropic glutamate receptor binding (IBA,IEA,IPI,ISO)

protein binding (IPI,ISO)

protein-containing complex binding (IPI)

scaffold protein binding (IPI)

SH3 domain binding (IEA,IPI)

signaling receptor complex adaptor activity (IDA)

somatostatin receptor binding (IPI)

structural constituent of postsynaptic density (IEA,ISO)

synaptic receptor adaptor activity (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

glutamate signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Paralemmin-1, a modulator of filopodia induction is required for spine maturation.	Arstikaitis P, etal., Mol Biol Cell. 2008 May;19(5):2026-38. doi: 10.1091/mbc.E07-08-0802. Epub 2008 Feb 20.
2.	Synaptic scaffolding proteins in rat brain. Ankyrin repeats of the multidomain Shank protein family interact with the cytoskeletal protein alpha-fodrin.	Bockers TM, etal., J Biol Chem 2001 Oct 26;276(43):40104-12.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	The postsynaptic density proteins Homer and Shank form a polymeric network structure.	Hayashi MK, etal., Cell. 2009 Apr 3;137(1):159-71. doi: 10.1016/j.cell.2009.01.050.
6.	Characterization of the Shank family of synaptic proteins. Multiple genes, alternative splicing, and differential expression in brain and development.	Lim S, etal., J Biol Chem 1999 Oct 8;274(41):29510-8.
7.	Sharpin, a novel postsynaptic density protein that directly interacts with the shank family of proteins.	Lim S, etal., Mol Cell Neurosci 2001 Feb;17(2):385-97.
8.	Loose ligation of the rat sciatic nerve elicits early accumulation of Shank1 protein in the post-synaptic density of spinal dorsal horn neurons.	Miletic G, etal., Pain. 2010 Apr;149(1):152-9. Epub 2010 Feb 18.
9.	Shank, a novel family of postsynaptic density proteins that binds to the NMDA receptor/PSD-95/GKAP complex and cortactin.	Naisbitt S, etal., Neuron 1999 Jul;23(3):569-82.
10.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	Dynamin isoform-specific interaction with the shank/ProSAP scaffolding proteins of the postsynaptic density and actin cytoskeleton.	Okamoto PM, etal., J Biol Chem 2001 Dec 21;276(51):48458-65.
12.	The Shank family of postsynaptic density proteins interacts with and promotes synaptic accumulation of the beta PIX guanine nucleotide exchange factor for Rac1 and Cdc42.	Park E, etal., J Biol Chem. 2003 May 23;278(21):19220-9. Epub 2003 Mar 7.
13.	Crystallization and preliminary X-ray crystallographic studies of the PDZ domain of Shank1 from Rattus norvegicus.	Park SH, etal., Acta Crystallogr D Biol Crystallogr 2002 Aug;58(Pt 8):1353-5.
14.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
15.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
17.	A functional role of postsynaptic density-95-guanylate kinase-associated protein complex in regulating Shank assembly and stability to synapses.	Romorini S, etal., J Neurosci. 2004 Oct 20;24(42):9391-404.
18.	Ribosomal S6 kinase 2 interacts with and phosphorylates PDZ domain-containing proteins and regulates AMPA receptor transmission.	Thomas GM, etal., Proc Natl Acad Sci U S A. 2005 Oct 18;102(42):15006-11. Epub 2005 Oct 10.
19.	The G protein-coupled receptor CL1 interacts directly with proteins of the Shank family.	Tobaben S, etal., J Biol Chem 2000 Nov 17;275(46):36204-10.
20.	Coupling of mGluR/Homer and PSD-95 complexes by the Shank family of postsynaptic density proteins.	Tu JC, etal., Neuron. 1999 Jul;23(3):583-92.
21.	Direct interaction of GluRdelta2 with Shank scaffold proteins in cerebellar Purkinje cells.	Uemura T, etal., Mol Cell Neurosci. 2004 Jun;26(2):330-41. doi: 10.1016/j.mcn.2004.02.007.
22.	Synamon, a novel neuronal protein interacting with synapse-associated protein 90/postsynaptic density-95-associated protein.	Yao I, etal., J Biol Chem 1999 Sep 24;274(39):27463-6.
23.	Somatostatin receptor interacting protein defines a novel family of multidomain proteins present in human and rodent brain.	Zitzer H, etal., J Biol Chem. 1999 Nov 12;274(46):32997-3001.

Additional References at PubMed

PMID:10806096	PMID:11498055	PMID:12954649	PMID:15121189	PMID:15458844	PMID:15483135	PMID:15689539	PMID:15950311	PMID:16002212	PMID:16606358	PMID:18272690	PMID:19208628
PMID:19416473	PMID:19547699	PMID:20117114	PMID:20868654	PMID:21144999	PMID:21376703	PMID:21695253	PMID:21795692	PMID:21940441	PMID:22503632	PMID:24298140	PMID:25775468
PMID:28263956	PMID:29250591	PMID:29476059	PMID:32564287	PMID:33577886

Genomics

Comparative Map Data

Shank1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	103,944,416 - 103,993,887 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	103,944,813 - 103,992,356 (+)	Ensembl				GRCr8
mRatBN7.2	1	94,807,879 - 94,857,356 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	94,808,276 - 94,855,824 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	100,193,688 - 100,241,225 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	108,666,330 - 108,713,869 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	101,956,762 - 102,004,293 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	100,297,137 - 100,344,377 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	100,297,152 - 100,344,377 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	101,362,243 - 101,410,338 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	94,791,887 - 94,840,584 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	89,071,051 - 89,118,344 (+)	NCBI		Celera
RGSC_v3.1	1	94,872,463 - 94,918,294 (+)	NCBI
Cytogenetic Map	1	q22	NCBI

SHANK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	50,659,255 - 50,719,802 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	50,659,255 - 50,719,802 (-)	Ensembl			hg38	GRCh38
GRCh37	19	51,162,512 - 51,223,059 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	55,856,896 - 55,912,007 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	55,856,895 - 55,912,007	NCBI
Celera	19	48,216,374 - 48,271,323 (-)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	47,499,910 - 47,555,290 (-)	NCBI		HuRef
CHM1_1	19	51,166,866 - 51,221,938 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	53,747,980 - 53,808,613 (-)	NCBI		T2T-CHM13v2.0

Shank1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	43,958,343 - 44,009,518 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	43,959,677 - 44,009,996 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	44,308,916 - 44,360,094 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	44,310,253 - 44,360,572 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	51,565,634 - 51,613,723 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	44,178,306 - 44,225,515 (+)	NCBI		MGSCv36	mm8
Celera	7	39,770,665 - 39,816,636 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	28.83	NCBI

Shank1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	523,765 - 564,472 (+)	Ensembl
ChiLan1.0	NW_004955559	522,466 - 566,275 (+)	NCBI	ChiLan1.0	ChiLan1.0

SHANK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	56,725,929 - 56,787,371 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	58,647,066 - 58,708,491 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	47,623,474 - 47,684,476 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	56,526,557 - 56,580,516 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	56,526,577 - 56,580,442 (-)	Ensembl			panPan2	panpan1.1

SHANK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	106,086,094 - 106,128,700 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	106,097,048 - 106,114,673 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	105,658,928 - 105,703,011 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	106,596,287 - 106,640,573 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	106,598,771 - 106,640,573 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	106,268,735 - 106,312,776 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	105,910,298 - 105,954,298 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	106,750,887 - 106,794,971 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Shank1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	22,550,731 - 22,595,302 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936889	428,417 - 470,060 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936889	428,404 - 470,161 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHANK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	55,451,094 - 55,499,031 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	55,452,095 - 55,496,304 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	51,348,953 - 51,395,795 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHANK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	43,718,904 - 43,776,814 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	43,716,714 - 43,773,945 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	23,732,704 - 23,793,449 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shank1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	3,938,170 - 3,976,870 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624832	3,934,525 - 3,978,607 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Shank1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	155,169,457 - 155,216,472 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Shank1
591 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1314
Count of miRNA genes:	189
Interacting mature miRNAs:	230
Transcripts:	ENSRNOT00000026100, ENSRNOT00000044257, ENSRNOT00000046418, ENSRNOT00000048805, ENSRNOT00000049346
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

BE101668

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	94,849,494 - 94,849,694 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	100,338,049 - 100,338,248	NCBI	Rnor6.0
Rnor_5.0	1	101,403,160 - 101,403,359	UniSTS	Rnor5.0
RGSC_v3.4	1	94,833,470 - 94,833,669	UniSTS	RGSC3.4
Celera	1	89,112,016 - 89,112,215	UniSTS
RH 3.4 Map	1	907.0	UniSTS
Cytogenetic Map	1	q22	UniSTS

RH137039

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	94,831,796 - 94,831,978 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	100,320,670 - 100,320,851	NCBI	Rnor6.0
Rnor_5.0	1	101,385,781 - 101,385,962	UniSTS	Rnor5.0
RGSC_v3.4	1	94,815,397 - 94,815,578	UniSTS	RGSC3.4
Celera	1	89,094,525 - 89,094,706	UniSTS
RH 3.4 Map	1	904.1	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
11	7	66	162	64	57	33	37	33	6	258	133	11	140	75	92	24	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF102855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF131951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF141902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF141904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF159046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY461452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026100 ⟹ ENSRNOP00000026100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	103,944,813 - 103,992,356 (+)	Ensembl
mRatBN7.2 Ensembl	1	94,808,276 - 94,855,824 (+)	Ensembl
Rnor_6.0 Ensembl	1	100,297,152 - 100,344,377 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000044257 ⟹ ENSRNOP00000039860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,808,276 - 94,855,824 (+)	Ensembl
Rnor_6.0 Ensembl	1	100,299,635 - 100,343,385 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092327 ⟹ ENSRNOP00000075838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,810,753 - 94,855,423 (+)	Ensembl
Rnor_6.0 Ensembl	1	100,299,626 - 100,343,976 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	100,322,102 - 100,329,623 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092528

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	100,322,102 - 100,330,237 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104599 ⟹ ENSRNOP00000084101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	94,833,455 - 94,855,824 (+)	Ensembl

RefSeq Acc Id:

NM_031751 ⟹ NP_113939

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,819 - 103,992,356 (+)	NCBI
mRatBN7.2	1	94,808,282 - 94,855,824 (+)	NCBI
Rnor_6.0	1	100,297,157 - 100,344,377 (+)	NCBI
Rnor_5.0	1	101,362,243 - 101,410,338 (+)	NCBI
RGSC_v3.4	1	94,791,887 - 94,840,584 (+)	RGD
Celera	1	89,071,051 - 89,118,344 (+)	RGD

Sequence:

show sequence

GGCACGAGGCGCCGCCGACCGGGACTCAGCAGCCCCGCCAGGCAGCTGCCTGTGATGCTGCTGT
CCCCCGTCGCCCCGTGGCCCCACGATGACCCACAGCCCCGCGACAAGCGAGGACGAGGAACGCC
ACAGTGCCAGCGAGTGTCCCGAGGGGGGCTCAGAATCGGACAGCTCCCCAGACGGACCAGGAAG
AGGCCCCCAGGGTACTCGGGGCCGGGGCAGCGGAGCACCTGGTAACCTGGCCTCTACCCGAGGC
CTCCAGGGACGCTCCATGTCTGTCCCTGACGACGCCCACTTCAGCATGATGGTTTTCAGGATTG
GCATCCCTGACTTGCACCAGACGAAATGCCTACGCTTCAACCCGGATGCTACCATCTGGACAGC
CAAACAGCAAGTACTCTGTGCCCTGAGCGAGAGTCTACAGGATGTGCTAAACTATGGACTGTTC
CAGCCAGCCACCTCAGGCCGGGATGCCAACTTCCTGGAGGAAGAGAGGCTTCTAAGAGAGTACC
CTCAGTCCTTTGAGAAAGGGGTACCCTACCTGGAGTTCCGCTACAAGACCCGAGTCTACAAACA
GACCAACCTGGATGAGAAACAGCTGGCCAAACTGCACACGAAGACGGGGTTGAAGAAGTTCCTT
GAATATGTGCAGCTCGGGACGTCTGACAAGGTGGCGAGGCTGCTGGACAAGGGGCTGGACCCCA
ATTACCACGACTCAGATTCAGGAGAGACACCTTTGACCCTGGCGGCCCAGACTGAAGGCTCAGT
AGAGGTGATTCGGACGCTGTGCCTGGGCGGGGCGCACATAGACTTCAGGGCCCGGGATGGCATG
ACAGCGCTGCACAAAGCTGCATGTGCTAGGCACTGCCTGGCACTCACGGCACTTCTGGACCTTG
GGGGCTCCCCCAACTACAAGGATCGACGAGGGCTGACCCCCCTGTTCCACACAGCTATGGTTGG
GGGAGACCCCCGCTGTTGTGAGCTACTTCTGTACAACAGGGCCCAGCTGGGCATTGCAGATGAG
AACGGCTGGCAGGAAATCCACCAGGCCTGCCAACGAGGGCACTCTCAGCACCTGGAACACCTGC
TCTTCTATGGGGCTGAGCCTGGAGCCCAGAATGCCTCAGGAAACACGGCCCTGCACATCTGTGC
TCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTTTATCGCGGAGCAAACAAGGATGTGAAA
AATAACAACGGACAGACACCCTTCCAGGTGGCTGTGATTGCTGGGAATTTTGAGCTGGGGGAAC
TGATTCGTAACCATCGGGAACAGGATGTGGTACCCTTCCAGGAGTCCCCCAAGTATGCAGCCCG
GCGTCGGGGACCCCCAGGCGCAGGGCTGACTGTACCCCCAGCGCTGCTGCGGGCTAACAGCGAC
ACGAGCATGGCGCTGCCTGATTGGATGGTGTTTTCGGCCCCAGGGGCCTCATCCTCTGGGACCC
CTGGCCCTACCTCAGGACCCCAGGGCCAGTCACAGCCCTCGGCCCCCAGCACCAAGCTCAGTAG
TGGGACCCTCAGAAGTGCCAGCAGCCCCCGAGGTGCCCGGGCACGCTCCCCATCCCGGGGGAGA
CATCCTGAAGATGCCAAGAGACAACCTCGAGGCCGACCCAGCTCCAGCGGGACACCCCGAGATG
GGCCGGCTGGGGGAACTGGGGGCTCAGGGGGCCCTGGGGGCTCCCTGGGTAGCAGAGGCAGACG
TAGGAAGCTCTATTCAGCGGTACCTGGACGCTCCTTCATGGCGGTGAAGTCATACCAGGCGCAA
GGCGAGGGGGAGATCTCTCTGAGTAAAGGCGAAAAGATCAAAGTGCTCAGCATCGGGGAAGGAG
GCTTCTGGGAAGGCCAGGTCAAAGGTCGAGTTGGCTGGTTCCCTTCTGACTGCCTAGAAGAGGT
GGCAAACCGTTCCCAGGAGGGAAGACAAGAAAGCCGAAGTGACAAGGCAAAGAGACTCTTCAGG
CATTACACAGTGGGCTCTTACGACAGCTTCGATGCCCCAAGTCTGATCGATGGGATTGACTCAG
GGAGTGATTACATCATCAAGGAGAAGACAGTCTTACTGCAGAAGAAGGACAGTGAGGGGTTCGG
GTTCGTGCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAATTCACCCCCACCCCGGCCTTC
CCGGCGCTGCAGTACCTCGAGTCTGTGGACGAGGGTGGCGTGGCATGGCGGGCTGGACTACGGA
TGGGAGACTTCCTCATCGAGGTGAATGGACAGAATGTAGTGAAGGTTGGCCACCGCCAGGTGGT
CAACATGATCCGACAGGGAGGCAACACACTGATGGTCAAGGTGGTGATGGTGACCAGACACCCA
GACATGGACGAGGCTGTCCACAAGAAAGCATCCCAGCAGGCTAAGCGGCTCCCGCCCCCAGCCA
TCTCCCTGCGTTCCAAGTCTATGACCTCAGAGCTGGAGGAAATGGTCTCCCCCTGGAAGAAGAA
AATTGAATACGAGCAACAGCCCGCGGCAGTGCCCAGCATGGAGAAAAAGAGGACTGTGTATCAG
ATGGCACTCAACAAACTGGATGAGATCTTGGCCGCTGCTCAGCAGACCATCAGCGCAAGTGAGA
GTCCTGGGCCTGGTGGCCTGGCATCCCTGGGCAAGCACCGACCCAAAGGATTCTTTGCCACTGA
GTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGCCTTCTTTCCTGCCTCCT
GGACCCGGCCTTATGCTCCGGCAGAAATCTATCGGGGCTGCGGAAGACGACAGACCCTACCTAG
CACCCCCAGCCATGAAATTCAGTCGTAGCCTGTCAGTCCCCGGTTCAGAGGACATACCCCCACC
ACCCACTACATCACCACCAGAGCCGCCCTATAGCACACCTCCGGCCCCCTCCTCCTCCGGCCGC
CTCACTCCCTCGCCTCGGGGAGGGCCCTTTAACCCCAGTTCTGGGGGTCCCCTTCCCGCCTCCT
CCCCTTCATCTTTCGATGGGCCATCTCCTCCTGACACCCGTGGTGGGGGCCGAGAAAAGAGCCT
ATATCACAGCGCAGCCCTGCCCCCTGCCCACCACCATCCACCTCATCACCACCATCATCACGCG
CCACCTCCCCAGCCCCACCATCACCATGCACATCCTCCTCACCCACCGGAGATGGAGACAGGAG
GTTCCCCCGACGATCCCCCACCTCGATTGGCCCTGGGACCCCAGCCCAGCCTTCGAGGCTGGCG
AGGTGGAGGACCCAGCCCGACCTCGGGGGCCCCATCACCTTCCCACCACAGTAGCAGCGGAGGC
AGCAGCGGCCCTACTCAGGCTCCCGCCCTGCGCTACTTCCAACTGCCCCCGAGGGCGGCCAGTG
CGGCTATGTATGTACCAGCACGTTCCGGCCGCGGTCGCAAGGGCCCACTGGTCAAGCAGACCAA
AGTGGAAGGCGAGCCCCAAAAGGGCAGCATCCCTTCCGCGTCCTCTCCAACATCCCCGGCGTTG
CCTCGGTCTGAACCACCTCCGGCCGGGCCGTCGGAGAAAAATTCCATCCCTATCCCGACCATCA
TCATCAAAGCCCCATCTACCAGTAGCAGCGGCCGCAGCAGTCAGGGAAGCAGCACAGAGGCTGA
GCCCCCCACCCAGCCCGATGGCGCGGGCGGCGGCGGATCCTCGCCTAGCCCTGCACCTGCCACG
TCCCCTGTGCCGCCATCCCCGTCGCCCGTGCCCACTCCCGCGTCACCCAGCGGCCCGGCCACCC
TGGATTTCACTAGCCAGTTTGGAGCAGCCCTAGTAGGCGCGGCGCGGAGGGAGGGAGGCTGGCA
GAACGAAGCCCGGCGGCGGTCCACGCTGTTCCTGTCCACCGACGCAGGAGATGAGGATGGAGGC
GACAGCGGGCTGGGCCCGGGGGGGCCCCCGGGTCCCCGGCTGCGCCATTCCAAATCCATTGACG
AAGGCATGTTCTCCGCAGAGCCGTACCTCCGGCTGGAGTCGGGGGGCAGCAGTGGGGGCTACGG
GGCCTACGCAGCGGGCAGCCGAGCCTACGGGGGCAGCGGGAGCAGCAGCGCCTTCACCAGCTTC
CTCCCCCCGCGGCCCCTGGTGCATCCGCTGACCGGCAAAGCCTTGGATCCCGCCTCTCCGCTGG
GGTTGGCCTTGGCCGCCCGGGAGCGGGCCTTGAAGGAGTCCTCGGAGGGTGGGGGCACCCCTCA
GCCGCCCCCGAGACCTCCATCACCACGCTACGACGCCCCACCGCCTACCCTTCACCACCACTCG
CCCCATTCACCCCATTCGCCACATGCGCGTCACGAGCCAGTGTTGCGCCTCTGGGGGGACCCCG
CGCGCCGGGAGCTGGGGTACCGGGCAGGCCTAGGGAGTCAGGAGAAGGCCCTTACCGCCAGTCC
ACCTGCAGCTCGCCGCTCCCTACTGCACCGTCTGCCCCCGACGGCTCCCGGGGTCGGGCCGCTC
CTGCTGCAGCTGGGGCCGGAGCCCCCAACTCCCCATCCTGGGGTGAGCAAGGCCTGGCGCACAG
CAGCCCCGGAGGAGCCGGAGCGGCTGCCGCTGCACGTGCGATTCCTTGAGAATTGCCAAGCCCG
GCCTCCCCCAGCTGGCACGAGAGGGTCCTCTACTGAAGATGGGCCTGGGGTCCCGCCTCCCAGC
CCTCGCAGAGTCTTGCCAACCTCTCCCACCTCCCCACGAGGCAACGAGGAGAACGGCCTTCCGC
TACTGGTCCTGCCACCGCCAGCCCCTTCGGTGGATGTGGACGACGGCGAGTTCTTGTTTGCGGA
GCCGCTGCCTCCACCCCTGGAGTTTTCCAATAGTTTCGAAAAGCCAGAGTCGCCTCTCACACCC
GGGCCTCCTCACCCACTCCCTGACCCTCCCTCCCCGGCTACCCCTCTACCCGCAGCCCCACCTC
CCGCTGTAGCCGCAGCCCCTCCCACCTTGGACTCCACAGCATCCAGCCTGACCTCTTACGACAG
CGAAGTGGCCACACTGACCCAGGGGGCTCCCGCGGCTCCTGGGGATCCTCCAGCTCCAGGCCCG
CCGGCCCCGGCAGCCCCAGCTCCCCCAGCACCGCAGCCAGGCCCTGATCCTCCACCTGGCACAG
ATTCTGGAATTGAGGAGGTGGACAGTCGGAGTAGCAGTGATCACCCGCTGGAGACCATCAGCAG
CGCATCCACACTCAGCAGCTTGTCCGCCGAAGGAGGAGGCAATACAGGGGGCGTGGCTGGGGGC
GGGGCCGGGGTGGCCAGTGGGACGGAGCTCCTGGACACCTACGTTGCCTACCTGGATGGCCAGG
CCTTCGGGGGCAGTGGAACTCCTGGCCCACCATATCCTCCCCAGCTCATGACTCCTTCTAAGCT
CCGGGGCAGGGCGCTTGGGACTAGTGGAAATTTAAGACCTGGTCCCAGTGGGGGACTCCGAGAT
CCTGTCACCCCCACCAGCCCCACTGTCTCTGTGACCGGAGCTGGAACAGATGGGCTACTGGCCT
TGAGTGCTTGCCCTGGACCCTCAACGGCAGGTGTGGCAGGGGGTCCCGTGGCAGTTGAGCCAGA
AGTCCCGCCTGTACCTTTGCCCGCTGCCTCATCCCTGCCTCGGAAGCTATTACCGTGGGAGGAG
GGTCCGGGACCACCACCACCACCCCTGCCAGGGCCCCTGTCCCAGCCTCAGGCCTCTGCCTTGG
CCACGGTCAAAGCCAGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGTTTGGTGGGTCCTC
TACCGCAGGAGGAGCTCTGCCTTGGGCTCGGGGAGGCAGCGGGGGCAGCACAGACAGCCACCAC
GGAGGAGCCAGTTACATCCCAGAGAGGACGTCCTCCCTGCAGCGGCAGAGGCTCTCTGAAGACT
CCCAGACCTCTCTCCTCTCCAAACCCAGCAGCAGCATCTTTCAGAACTGGCCTAAACCCCCTCT
GCCACCACTCCCCACTGGGTCTGGGGTCTCCTCTTCAACAGCTGCAGCCCCGGGAGCTACATCC
CCTTCAGCCTCATCTGCCTCAGCTTCCACCAGACACCTGCAAGGTGTGGAATTTGAGATGCGGC
CTCCGCTGCTCCGCCGGGCACCCAGCCCTTCGTTGCTGCCTGCTTCGGATCACAAGGTCAGCCC
AGCGCCCAGGCCTTCCTCTTTGCCCATCCTGCCTTCAGGACCCATCTACCCGGGCCTCTTCGAC
ATCCGTAGCTCTCCAACCGGAGGGGCGGGAGGCTCGACTGACCCCTTCGCTCCCGTCTTTGTGC
CACCACACCCCGGGATATCTGGGGGTCTTGGAGGAGCCTTGTCTGGGGCCTCTCGCTCCCTATC
ACCCACCCGCCTGCTCTCGCTGCCCCCGGACAAGCCGTTCGGCGCCAAGCCTCTAGGGTTCTGG
ACCAAGTTTGACGTCGCCGATTGGCTAGAGTGGCTGGGCTTGTCGGAGCACCGAGCCCAGTTCC
TGGACCACGAGATTGATGGCTCCCATCTGCCTGCCTTGACCAAGGAGGACTATGTGGACCTGGG
TGTAACCAGGGTGGGCCACCGTATGAACATTGACCGGGCTCTCAAATTTTTCCTGGAGAGGTGA
TGGCTGACCTGGACGGACCAGCCCGTCCATAGGACCCTTGAGCCCGCTGACCTCTGACCTCTGA
CCCCTCTGACCATCATTCCCCCTCTCCCCTCAGGGGGCCAGGGACTCTGCTAAAACTGTGTCCT
GCCCCGTCTCCCCAAGCCTGACTGAGGTCCCCAGGTGGACCGGATGCAGGCCAGACAATGGCAC
CTCGCAAGAGGTGGGCAGCTGACACAAGACTGCAAGTGGAGTAGATGGGGGATTAGAAAAAAAT
GACAAAGGGGTACTGAAGAAAGAGGGAAAAAGGCTGACTAGGGGTGGGGGAACAGACAGAGCCA
TAGTGGGTCAGTCCAGAGCCTGACCTGATGGGGTCCTGGGAAGGTGTGCCCTCCGATTCCATCA
TTTGCGCCTCTCAAATAACCCTTTTCACCTCTCTAGGCCCCTCAGCCTTCCCACTCTCCTTGGC
TCACTCAGCTGCCCAGCCCCCTGCCTCTTGCACGCCTGTTCCCCTCCCTGGCTGCAGTTTTTGC
ACAAGCTTGCCCCCTGGCTGTCTTGCACACCTCCGGCCTGTAAGGCCCTCTCAGCTTCCCAACA
CGCTGCATTCGGTTTTTTGTTTTTTGTTTTGTTTTCTTTTGTTTCCTCAAGCGCCACCACCTTT
GCTAGCTTGCTCTCTGCATACTTGCTTCTGGGGGAGGAGGGTATTGCACCCTTTATTTCTCTAG
CTACCCTGGACCCATGCTGCAGACACACATGGGACTTTCCTTCCCTCTCCTGCTCACAGACCCA
GGCACATTCCCGTAGTCCCTGGCCACCCCTGCTCTCTGCTCTCTCTGCACACTCTGAACACACC
TCCATTTTCATACGGGGTCTCTTTCCGGTCTTGCCACCCCCATACCGTTACTCTCCTTCTCATG
GTGGCACTCCTGTGCCCTGCCTTCTCTATTTTCTCTGACACTTAGCACACCCCTCCCACACTCG
TGGCCCTGAACTCTCTTCCAAATGTTTCACTCG

hide sequence

RefSeq Acc Id:

XM_008759416 ⟹ XP_008757638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,416 - 103,989,060 (+)	NCBI
mRatBN7.2	1	94,807,879 - 94,852,298 (+)	NCBI
Rnor_6.0	1	100,297,137 - 100,342,197 (+)	NCBI

Sequence:

show sequence

GGGGGAGGGGGGAGGGGCCGGGCGCCGCCGACCGGGACTCAGCAGCCCCGCCAGGCAGCTGCCT
GTGATGCTGCTGTCCCCCGTCGCCCCGTGGCCCCACGATGACCCACAGCCCCGCGACAAGCGAG
GACGAGGAACGCCACAGTGCCAGCGAGTGTCCCGAGGGGGGCTCAGAATCGGACAGCTCCCCAG
ACGGACCAGGAAGAGGCCCCCAGGGTACTCGGGGCCGGGGCAGCGGAGCACCTGGTAACCTGGC
CTCTACCCGAGGCCTCCAGGGACGCTCCATGTCTGTCCCTGACGACGCCCACTTCAGCATGATG
GTTTTCAGGATTGGCATCCCTGACTTGCACCAGACGAAATGCCTACGCTTCAACCCGGATGCTA
CCATCTGGACAGCCAAACAGCAAGTACTCTGTGCCCTGAGCGAGAGTCTACAGGATGTGCTAAA
CTATGGACTGTTCCAGCCAGCCACCTCAGGCCGGGATGCCAACTTCCTGGAGGAAGAGAGGCTT
CTAAGAGAGTACCCTCAGTCCTTTGAGAAAGGGGTACCCTACCTGGAGTTCCGCTACAAGACCC
GAGTCTACAAACAGACCAACCTGGATGAGAAACAGCTGGCCAAACTGCACACGAAGACGGGGTT
GAAGAAGTTCCTTGAATATGTGCAGCTCGGGACGTCTGACAAGGTGGCGAGGCTGCTGGACAAG
GGGCTGGACCCCAATTACCACGACTCAGATTCAGGAGAGACACCTTTGACCCTGGCGGCCCAGA
CTGAAGGCTCAGTAGAGGTGATTCGGACGCTGTGCCTGGGCGGGGCGCACATAGACTTCAGGGC
CCGGGATGGCATGACAGCGCTGCACAAAGCTGCATGTGCTAGGCACTGCCTGGCACTCACGGCA
CTTCTGGACCTTGGGGGCTCCCCCAACTACAAGGATCGACGAGGGCTGACCCCCCTGTTCCACA
CAGCTATGGTTGGGGGAGACCCCCGCTGTTGTGAGCTACTTCTGTACAACAGGGCCCAGCTGGG
CATTGCAGATGAGAACGGCTGGCAGGAAATCCACCAGGCCTGCCAACGAGGGCACTCTCAGCAC
CTGGAACACCTGCTCTTCTATGGGGCTGAGCCTGGAGCCCAGAATGCCTCAGGAAACACGGCCC
TGCACATCTGTGCTCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTTTATCGCGGAGCAAA
CAAGGATGTGAAAAATAACAACGGACAGACACCCTTCCAGGTGGCTGTGATTGCTGGGAATTTT
GAGCTGGGGGAACTGATTCGTAACCATCGGGAACAGGATGTGGTACCCTTCCAGGAGTCCCCCA
AGTATGCAGCCCGGCGTCGGGGACCCCCAGGCGCAGGGCTGACTGTACCCCCAGCGCTGCTGCG
GGCTAACAGCGACACGAGCATGGCGCTGCCTGATTGGATGGTGTTTTCGGCCCCAGGGGCCTCA
TCCTCTGGGACCCCTGGCCCTACCTCAGGACCCCAGGGCCAGTCACAGCCCTCGGCCCCCAGCA
CCAAGCTCAGTAGTGGGACCCTCAGAAGTGCCAGCAGCCCCCGAGGTGCCCGGGCACGCTCCCC
ATCCCGGGGGAGACATCCTGAAGATGCCAAGAGACAACCTCGAGGCCGACCCAGCTCCAGCGGG
ACACCCCGAGATGGGCCGGCTGGGGGAACTGGGGGCTCAGGGGGCCCTGGGGGCTCCCTGGGTA
GCAGAGGCAGACGTAGGAAGCTCTATTCAGCGGTACCTGGACGCTCCTTCATGGCGGTGAAGTC
ATACCAGGCGCAAGGCGAGGGGGAGATCTCTCTGAGTAAAGGCGAAAAGATCAAAGTGCTCAGC
ATCGGGGAAGGAGGCTTCTGGGAAGGCCAGGTCAAAGGTCGAGTTGGCTGGTTCCCTTCTGACT
GCCTAGAAGAGGTGGCAAACCGTTCCCAGGAGGGAAGACAAGAAAGCCGAAGTGACAAGGCAAA
GAGACTCTTCAGGCATTACACAGTGGGCTCTTACGACAGCTTCGATGCCCCAAGTCTGATCGAT
GGGATTGACTCAGGGAGTGATTACATCATCAAGGAGAAGACAGTCTTACTGCAGAAGAAGGACA
GTGAGGGGTTCGGGTTCGTGCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAATTCACCCC
CACCCCGGCCTTCCCGGCGCTGCAGTACCTCGAGTCTGTGGACGAGGGTGGCGTGGCATGGCGG
GCTGGACTACGGATGGGAGACTTCCTCATCGAGGTGAATGGACAGAATGTAGTGAAGGTTGGCC
ACCGCCAGGTGGTCAACATGATCCGACAGGGAGGCAACACACTGATGGTCAAGGTGGTGATGGT
GACCAGACACCCAGACATGGACGAGGCTGTCCACAAGAAAGCATCCCAGCAGGCTAAGCGGCTC
CCGCCCCCAGCCATCTCCCTGCGTTCCAAGTCTATGACCTCAGAGCTGGAGGAAATGGTCTCCC
CCTGGAAGAAGAAAATTGAATACGAGCAACAGCCCGCGGCAGTGCCCAGCATGGAGAAAAAGAG
GACTGTGTATCAGATGGCACTCAACAAACTGGATGAGATCTTGGCCGCTGCTCAGCAGACCATC
AGCGCAAGTGAGAGTCCTGGGCCTGGTGGCCTGGCATCCCTGGGCAAGCACCGACCCAAAGGAT
TCTTTGCCACTGAGTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGCCTTC
TTTCCTGCCTCCTGGACCCGGCCTTATGCTCCGGCAGAAATCTATCGGGGCTGCGGAAGACGAC
AGACCCTACCTAGCACCCCCAGCCATGAAATTCAGTCGTAGCCTGTCAGTCCCCGGTTCAGAGG
ACATACCCCCACCACCCACTACATCACCACCAGAGCCGCCCTATAGCACACCTCCGGCCCCCTC
CTCCTCCGGCCGCCTCACTCCCTCGCCTCGGGGAGGGCCCTTTAACCCCAGTTCTGGGGGTCCC
CTTCCCGCCTCCTCCCCTTCATCTTTCGATGGGCCATCTCCTCCTGACACCCGTGGTGGGGGCC
GAGAAAAGAGCCTATATCACAGCGCAGCCCTGCCCCCTGCCCACCACCATCCACCTCATCACCA
CCATCATCACGCGCCACCTCCCCAGCCCCACCATCACCATGCACATCCTCCTCACCCACCGGAG
ATGGAGACAGGAGGTTCCCCCGACGATCCCCCACCTCGATTGGCCCTGGGACCCCAGCCCAGCC
TTCGAGGCTGGCGAGGTGGAGGACCCAGCCCGACCTCGGGGGCCCCATCACCTTCCCACCACAG
TAGCAGCGGAGGCAGCAGCGGCCCTACTCAGGCTCCCGCCCTGCGCTACTTCCAACTGCCCCCG
AGGGCGGCCAGTGCGGCTATGTATGTACCAGCACGTTCCGGCCGCGGTCGCAAGGGCCCACTGG
TCAAGCAGACCAAAGTGGAAGGCGAGCCCCAAAAGGGCAGCATCCCTTCCGCGTCCTCTCCAAC
ATCCCCGGCGTTGCCTCGGTCTGAACCACCTCCGGCCGGGCCGTCGGAGAAAAATTCCATCCCT
ATCCCGACCATCATCATCAAAGCCCCATCTACCAGTAGCAGCGGCCGCAGCAGTCAGGGAAGCA
GCACAGAGGCTGAGCCCCCCACCCAGCCCGATGGCGCGGGCGGCGGCGGATCCTCGCCTAGCCC
TGCACCTGCCACGTCCCCTGTGCCGCCATCCCCGTCGCCCGTGCCCACTCCCGCGTCACCCAGC
GGCCCGGCCACCCTGGATTTCACTAGCCAGTTTGGAGCAGCCCTAGTAGGCGCGGCGCGGAGGG
AGGGAGGCTGGCAGAACGAAGCCCGGCGGCGGTCCACGCTGTTCCTGTCCACCGACGCAGGAGA
TGAGGATGGAGGCGACAGCGGGCTGGGCCCGGGGGGGCCCCCGGGTCCCCGGCTGCGCCATTCC
AAATCCATTGACGAAGGCATGTTCTCCGCAGAGCCGTACCTCCGGCTGGAGTCAGGGGGCAGCA
GTGGGGGCTACGGGGCCTACGCAGCGGGCAGCCGAGCCTACGGGGGCAGCGGGAGCAGCAGCGC
CTTCACCAGCTTCCTCCCCCCGCGGCCCCTGGTGCATCCGCTGACCGGCAAAGCCTTGGATCCC
GCCTCTCCGCTGGGGTTGGCCTTGGCCGCCCGGGAGCGGGCCTTGAAGGAGTCCTCGGAGGGTG
GGGGCACCCCTCAGCCGCCCCCGAGACCTCCATCACCACGCTACGACGCCCCACCGCCTACCCT
TCACCACCACTCGCCCCATTCACCCCATTCGCCACATGCGCGTCACGAGCCAGTGTTGCGCCTC
TGGGGGGACCCCGCGCGCCGGGAGCTGGGGTACCGGGCAGGCCTAGGGAGTCAGGAGAAGGCCC
TTACCGCCAGTCCACCTGCAGCTCGCCGCTCCCTACTGCACCGTCTGCCCCCGACGGCTCCCGG
GGTCGGGCCGCTCCTGCTGCAGCTGGGGCCGGAGCCCCCAACTCCCCATCCTGGGGTGAGCAAG
GCCTGGCGCACAGCAGCCCCGGAGGAGCCGGAGCGGCTGCCGCTGCACGTGCGATTCCTTGAGA
ATTGCCAAGCCCGGCCTCCCCCAGCTGGCACGAGAGGGTCCTCTACTGAAGATGGGCCTGGGGT
CCCGCCTCCCAGCCCTCGCAGAGTCTTGCCAACCTCTCCCACCTCCCCACGAGGCAACGAGGAG
AACGGCCTTCCGCTACTGGTCCTGCCACCGCCAGCCCCTTCGGTGGATGTGGACGACGGCGAGT
TCTTGTTTGCGGAGCCGCTGCCTCCACCCCTGGAGTTTTCCAATAGTTTCGAAAAGCCAGAGTC
GCCTCTCACACCCGGGCCTCCTCACCCACTACCTGACCCTCCCTCCCCGGCTACCCCTCTACCC
GCAGCCCCACCTCCCGCTGTAGCCGCAGCCCCTCCCACCTTGGACTCCACAGCATCCAGCCTGA
CCTCTTACGACAGCGAAGTGGCCACACTGACCCAGGGGGCTCCCGCGGCTCCTGGGGATCCTCC
AGCTCCAGGCCCGCCGGCCCCGGCAGCCCCAGCTCCCCCAGCACCGCAGCCAGGCCCTGATCCT
CCACCTGGCACAGATTCTGGAATTGAGGAGGTGGACAGTCGGAGTAGCAGTGATCACCCGCTGG
AGACCATCAGCAGCGCATCCACACTCAGCAGCTTGTCCGCCGAAGGAGGAGGCAATACAGGGGG
CGTGGCTGGGGGCGGGGCCGGGGTGGCCAGTGGGACGGAGCTCCTGGACACCTACGTTGCCTAC
CTGGATGGCCAGGCCTTCGGGGGCAGTGGAACTCCTGGCCCACCATATCCTCCCCAGCTCATGA
CTCCTTCTAAGCTCCGGGGCAGGGCGCTTGGGACTAGTGGAAATTTAAGACCTGGTCCCAGTGG
GGGACTCCGAGATCCTGTCACCCCCACCAGCCCCACTGTCTCTGTGACCGGAGCTGGAACAGAT
GGGCTACTGGCCTTGAGTGCTTGCCCTGGACCCTCAACGGCAGGTGTGGCAGGGGGTCCCGTGG
CAGTTGAGCCAGAAGTCCCGCCTGTACCTTTGCCCGCTGCCTCATCCCTGCCTCGGAAGCTATT
ACCGTGGGAGGAGGGTCCGGGACCACCACCACCACCCCTGCCAGGGCCCCTGTCCCAGCCTCAG
GCCTCTGCCTTGGCCACGGTCAAAGCCAGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGT
TTGGTGGGTCCTCTACCGCAGGAGGAGCTCTGCCTTGGGCTCGGGGAGGCAGCGGGGGCAGCAC
AGACAGCCACCACGGAGGAGCCAGTTACATCCCAGAGAGGACGTCCTCCCTGCAGCGGCAGAGG
AAACGGACCCCTAAGAAGCACACTTTCAGCTCCATGGTCACCATAACCCATGGCCCAAGATGAA
TGGCTACATGTGTTTATTTTGTTTTTGATGGTCCTGGAGATCAAACCTAGGACTTCAGGGCTAG
TGCTCAACCACTGGGCCACTGTCACGGCCTCCTCAATGGGGAAGTCTAGTCAGAGATCTGCCAC
AGAAGTCACACCCCAGCCCCTTTACTGGGAAGTTGTAGGCAGGGGTTCAACCACTGAGCTACAC
GCCCCCCCCCCCAGCCTTATTATGTATGGTATCAGGGCCTAACAAAGTTGCTTTGGCTGGCCTT
GAGTCTTGTAGCCCAAGTTGGGTTTAGACTTCTAATCCTCCTGCCTCAACTTCCCCAGTAACTG
GAATGACAGACCTATACCACCAAACCTAGCTACAAAATATTAACAACAGCAACAAAATTGGAGT
AACTGAAGGTGTGTGTGGCGCTCGCTTTACGGCAGCAGGTAGATGACTCCCAACCCCACAGGAG
GAGGGGACACAGAGCCTACTAGAAAGGGATTGGGCCAGTGCTCCCGACAGGATGGAGGAGACAG
GCAACTTTGGAGGACCTAGCACCCACTAGATAGGAAGATACGGGTCTATGCTGAAGTTCCCCCA
AACACTTTTTAGTTGTGCTCTCTGTGAAGCCATGATCCAAGCTAACAGTGGCAGCGTGGAAGGA
GTCCCTTCTTTGACTCAGATGCGGTGAGGGGAGTTTGAAATTCTTCCTCTCCATCTACAGAATG
CACTGTAATTCTGTTCCCTGTGGATTTAGCAGGCCTTGGAGATATGAAGCAATTCACTCATATG
GTTCATGGGCGGATGGAAGGGTGCTGCATTTAATCCTCGGATGCATAGATTCAATGAACACAGT
AGTGTGCCTTTATGGATAAAGAGAGGCCGTAGTTGACAGACCAGGACAGATCAGTGCCCATCTT
GCTCCATGGTCACCATAACCCATGTGTATTAAGGTCCAGCTGCTACATTCCTAGACCCTCACTC
AAAGATTCCAAGCAGGGGCTGGACCACTGCACAACACCCCTAGGCCCTCACTGGGGGGATTATA
GCCAGAGGCCCTATCACTGAGCCATACTGCCAGTTCCCTCTAACTCTGGCATTCTAGGCAGGAG
CACTACCACTGAGCAACACCTCAAGCTAGACAGTAGGTGCAATAATTATGGCTATCCCCACAAA
ATAACCCAAGAATTGGCTGTTTACAGTTATCTCGGATAAGGTCACCTGGCTGTGTAAGGGAACA
GGGGAACAGCCAGTTCAAAGGCCCTGTGGTGTGGCCACGCTGAAGGGAGCTCAAGGGATGAGGG
GAACCTTTTTCTCCCCTTGTTTCTTCTCTCTTTCATCTCCCTCTCTTCACCTCTCTCTCTCTGT
TCTCTGTCCCCATCCCTTCCATCTCTCTCCCCCTTGAAAACCCACCCTCTTTTTGTTGTTGTTA
CGTTTGTTTCTGTCTCCCTGTCTTCCACTCTGCTATAACTGACCATAACCAAAACAAAAAACAA
ACAAAAAAAAAAAAAACCAAAAAAC

hide sequence

RefSeq Acc Id:

XM_017589760 ⟹ XP_017445249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,417 - 103,993,887 (+)	NCBI
mRatBN7.2	1	94,807,880 - 94,857,356 (+)	NCBI
Rnor_6.0	1	100,297,137 - 100,343,978 (+)	NCBI

Sequence:

show sequence

GGGGGAGGGGGGAGGGGCCGGGCGCCGCCGACCGGGACTCAGCAGCCCCGCCAGGCAGCTGCCT
GTGATGCTGCTGTCCCCCGTCGCCCCGTGGCCCCACGATGACCCACAGCCCCGCGACAAGCGAG
GACGAGGAACGCCACAGTGCCAGCGAGTGTCCCGAGGGGGGCTCAGAATCGGACAGCTCCCCAG
ACGGACCAGGAAGAGGCCCCCAGGGTACTCGGGGCCGGGGCAGCGGAGCACCTGGTAACCTGGC
CTCTACCCGAGGCCTCCAGGGACGCTCCATGTCTGTCCCTGACGACGCCCACTTCAGCATGATG
GTTTTCAGGATTGGCATCCCTGACTTGCACCAGACGAAATGCCTACGCTTCAACCCGGATGCTA
CCATCTGGACAGCCAAACAGCAAGTACTCTGTGCCCTGAGCGAGAGTCTACAGGATGTGCTAAA
CTATGGACTGTTCCAGCCAGCCACCTCAGGCCGGGATGCCAACTTCCTGGAGGAAGAGAGGCTT
CTAAGAGAGTACCCTCAGTCCTTTGAGAAAGGGGTACCCTACCTGGAGTTCCGCTACAAGACCC
GAGTCTACAAACAGACCAACCTGGATGAGAAACAGCTGGCCAAACTGCACACGAAGACGGGGTT
GAAGAAGTTCCTTGAATATGTGCAGCTCGGGACGTCTGACAAGGTGGCGAGGCTGCTGGACAAG
GGGCTGGACCCCAATTACCACGACTCAGATTCAGGAGAGACACCTTTGACCCTGGCGGCCCAGA
CTGAAGGCTCAGTAGAGGTGATTCGGACGCTGTGCCTGGGCGGGGCGCACATAGACTTCAGGGC
CCGGGATGGCATGACAGCGCTGCACAAAGCTGCATGTGCTAGGCACTGCCTGGCACTCACGGCA
CTTCTGGACCTTGGGGGCTCCCCCAACTACAAGGATCGACGAGGGCTGACCCCCCTGTTCCACA
CAGCTATGGTTGGGGGAGACCCCCGCTGTTGTGAGCTACTTCTGTACAACAGGGCCCAGCTGGG
CATTGCAGATGAGAACGGCTGGCAGGAAATCCACCAGGCCTGCCAACGAGGGCACTCTCAGCAC
CTGGAACACCTGCTCTTCTATGGGGCTGAGCCTGGAGCCCAGAATGCCTCAGGAAACACGGCCC
TGCACATCTGTGCTCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTTTATCGCGGAGCAAA
CAAGGATGTGAAAAATAACAACGGACAGACACCCTTCCAGGTGGCTGTGATTGCTGGGAATTTT
GAGCTGGGGGAACTGATTCGTAACCATCGGGAACAGGATGTGGTACCCTTCCAGGAGTCCCCCA
AGTATGCAGCCCGGCGTCGGGGACCCCCAGGCGCAGGGCTGACTGTACCCCCAGCGCTGCTGCG
GGCTAACAGCGACACGAGCATGGCGCTGCCTGATTGGATGGTGTTTTCGGCCCCAGGGGCCTCA
TCCTCTGGGACCCCTGGCCCTACCTCAGGACCCCAGGGCCAGTCACAGCCCTCGGCCCCCAGCA
CCAAGCTCAGTAGTGGGACCCTCAGAAGTGCCAGCAGCCCCCGAGGTGCCCGGGCACGCTCCCC
ATCCCGGGGGAGACATCCTGAAGATGCCAAGAGACAACCTCGAGGCCGACCCAGCTCCAGCGGG
ACACCCCGAGATGGGCCGGCTGGGGGAACTGGGGGCTCAGGGGGCCCTGGGGGCTCCCTGGGTA
GCAGAGGCAGACGTAGGAAGCTCTATTCAGCGGTACCTGGACGCTCCTTCATGGCGGTGAAGTC
ATACCAGGCGCAAGGCGAGGGGGAGATCTCTCTGAGTAAAGGCGAAAAGATCAAAGTGCTCAGC
ATCGGGGAAGGAGGCTTCTGGGAAGGCCAGGTCAAAGGTCGAGTTGGCTGGTTCCCTTCTGACT
GCCTAGAAGAGGTGGCAAACCGTTCCCAGGAGGGAAGACAAGAAAGCCGAAGTGACAAGGCAAA
GAGACTCTTCAGGCATTACACAGTGGGCTCTTACGACAGCTTCGATGCCCCAAGTGATTACATC
ATCAAGGAGAAGACAGTCTTACTGCAGAAGAAGGACAGTGAGGGGTTCGGGTTCGTGCTCCGGG
GGGCCAAGGCGCAGACCCCCATCGAGGAATTCACCCCCACCCCGGCCTTCCCGGCGCTGCAGTA
CCTCGAGTCTGTGGACGAGGGTGGCGTGGCATGGCGGGCTGGACTACGGATGGGAGACTTCCTC
ATCGAGGTGAATGGACAGAATGTAGTGAAGGTTGGCCACCGCCAGGTGGTCAACATGATCCGAC
AGGGAGGCAACACACTGATGGTCAAGGTGGTGATGGTGACCAGACACCCAGACATGGACGAGGC
TGTCCACAAGAAAGCATCCCAGCAGGCTAAGCGGCTCCCGCCCCCAGCCATCTCCCTGCGTTCC
AAGTCTATGACCTCAGAGCTGGAGGAAATGGTCTCCCCCTGGAAGAAGAAAATTGAATACGAGC
AACAGCCCGCGGCAGTGCCCAGCATGGAGAAAAAGAGGACTGTGTATCAGATGGCACTCAACAA
ACTGGATGAGATCTTGGCCGCTGCTCAGCAGACCATCAGCGCAAGTGAGAGTCCTGGGCCTGGT
GGCCTGGCATCCCTGGGCAAGCACCGACCCAAAGGATTCTTTGCCACTGAGTCGAGCTTTGATC
CTCACCACCGCTCCCAGCCAAGTTATGACCGGCCTTCTTTCCTGCCTCCTGGACCCGGCCTTAT
GCTCCGGCAGAAATCTATCGGGGCTGCGGAAGACGACAGACCCTACCTAGCACCCCCAGCCATG
AAATTCAGTCGTAGCCTGTCAGTCCCCGGTTCAGAGGACATACCCCCACCACCCACTACATCAC
CACCAGAGCCGCCCTATAGCACACCTCCGGCCCCCTCCTCCTCCGGCCGCCTCACTCCCTCGCC
TCGGGGAGGGCCCTTTAACCCCAGTTCTGGGGGTCCCCTTCCCGCCTCCTCCCCTTCATCTTTC
GATGGGCCATCTCCTCCTGACACCCGTGGTGGGGGCCGAGAAAAGAGCCTATATCACAGCGCAG
CCCTGCCCCCTGCCCACCACCATCCACCTCATCACCACCATCATCACGCGCCACCTCCCCAGCC
CCACCATCACCATGCACATCCTCCTCACCCACCGGAGATGGAGACAGGAGGTTCCCCCGACGAT
CCCCCACCTCGATTGGCCCTGGGACCCCAGCCCAGCCTTCGAGGCTGGCGAGGTGGAGGACCCA
GCCCGACCTCGGGGGCCCCATCACCTTCCCACCACAGTAGCAGCGGAGGCAGCAGCGGCCCTAC
TCAGGCTCCCGCCCTGCGCTACTTCCAACTGCCCCCGAGGGCGGCCAGTGCGGCTATGTATGTA
CCAGCACGTTCCGGCCGCGGTCGCAAGGGCCCACTGGTCAAGCAGACCAAAGTGGAAGGCGAGC
CCCAAAAGGGCAGCATCCCTTCCGCGTCCTCTCCAACATCCCCGGCGTTGCCTCGGTCTGAACC
ACCTCCGGCCGGGCCGTCGGAGAAAAATTCCATCCCTATCCCGACCATCATCATCAAAGCCCCA
TCTACCAGTAGCAGCGGCCGCAGCAGTCAGGGAAGCAGCACAGAGGCTGAGCCCCCCACCCAGC
CCGATGGCGCGGGCGGCGGCGGATCCTCGCCTAGCCCTGCACCTGCCACGTCCCCTGTGCCGCC
ATCCCCGTCGCCCGTGCCCACTCCCGCGTCACCCAGCGGCCCGGCCACCCTGGATTTCACTAGC
CAGTTTGGAGCAGCCCTAGTAGGCGCGGCGCGGAGGGAGGGAGGCTGGCAGAACGAAGCCCGGC
GGCGGTCCACGCTGTTCCTGTCCACCGACGCAGGAGATGAGGATGGAGGCGACAGCGGGCTGGG
CCCGGGGGGGCCCCCGGGTCCCCGGCTGCGCCATTCCAAATCCATTGACGAAGGCATGTTCTCC
GCAGAGCCGTACCTCCGGCTGGAGTCAGGGGGCAGCAGTGGGGGCTACGGGGCCTACGCAGCGG
GCAGCCGAGCCTACGGGGGCAGCGGGAGCAGCAGCGCCTTCACCAGCTTCCTCCCCCCGCGGCC
CCTGGTGCATCCGCTGACCGGCAAAGCCTTGGATCCCGCCTCTCCGCTGGGGTTGGCCTTGGCC
GCCCGGGAGCGGGCCTTGAAGGAGTCCTCGGAGGGTGGGGGCACCCCTCAGCCGCCCCCGAGAC
CTCCATCACCACGCTACGACGCCCCACCGCCTACCCTTCACCACCACTCGCCCCATTCACCCCA
TTCGCCACATGCGCGTCACGAGCCAGTGTTGCGCCTCTGGGGGGACCCCGCGCGCCGGGAGCTG
GGGTACCGGGCAGGCCTAGGGAGTCAGGAGAAGGCCCTTACCGCCAGTCCACCTGCAGCTCGCC
GCTCCCTACTGCACCGTCTGCCCCCGACGGCTCCCGGGGTCGGGCCGCTCCTGCTGCAGCTGGG
GCCGGAGCCCCCAACTCCCCATCCTGGGGTGAGCAAGGCCTGGCGCACAGCAGCCCCGGAGGAG
CCGGAGCGGCTGCCGCTGCACGTGCGATTCCTTGAGAATTGCCAAGCCCGGCCTCCCCCAGCTG
GCACGAGAGGGTCCTCTACTGAAGATGGGCCTGGGGTCCCGCCTCCCAGCCCTCGCAGAGTCTT
GCCAACCTCTCCCACCTCCCCACGAGGCAACGAGGAGAACGGCCTTCCGCTACTGGTCCTGCCA
CCGCCAGCCCCTTCGGTGGATGTGGACGACGGCGAGTTCTTGTTTGCGGAGCCGCTGCCTCCAC
CCCTGGAGTTTTCCAATAGTTTCGAAAAGCCAGAGTCGCCTCTCACACCCGGGCCTCCTCACCC
ACTACCTGACCCTCCCTCCCCGGCTACCCCTCTACCCGCAGCCCCACCTCCCGCTGTAGCCGCA
GCCCCTCCCACCTTGGACTCCACAGCATCCAGCCTGACCTCTTACGACAGCGAAGTGGCCACAC
TGACCCAGGGGGCTCCCGCGGCTCCTGGGGATCCTCCAGCTCCAGGCCCGCCGGCCCCGGCAGC
CCCAGCTCCCCCAGCACCGCAGCCAGGCCCTGATCCTCCACCTGGCACAGATTCTGGAATTGAG
GAGGTGGACAGTCGGAGTAGCAGTGATCACCCGCTGGAGACCATCAGCAGCGCATCCACACTCA
GCAGCTTGTCCGCCGAAGGAGGAGGCAATACAGGGGGCGTGGCTGGGGGCGGGGCCGGGGTGGC
CAGTGGGACGGAGCTCCTGGACACCTACGTTGCCTACCTGGATGGCCAGGCCTTCGGGGGCAGT
GGAACTCCTGGCCCACCATATCCTCCCCAGCTCATGACTCCTTCTAAGCTCCGGGGCAGGGCGC
TTGGGACTAGTGGAAATTTAAGACCTGGTCCCAGTGGGGGACTCCGAGATCCTGTCACCCCCAC
CAGCCCCACTGTCTCTGTGACCGGAGCTGGAACAGATGGGCTACTGGCCTTGAGTGCTTGCCCT
GGACCCTCAACGGCAGGTGTGGCAGGGGGTCCCGTGGCAGTTGAGCCAGAAGTCCCGCCTGTAC
CTTTGCCCGCTGCCTCATCCCTGCCTCGGAAGCTATTACCGTGGGAGGAGGGTCCGGGACCACC
ACCACCACCCCTGCCAGGGCCCCTGTCCCAGCCTCAGGCCTCTGCCTTGGCCACGGTCAAAGCC
AGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGTTTGGTGGGTCCTCTACCGCAGGAGGAG
CTCTGCCTTGGGCTCGGGGAGGCAGCGGGGGCAGCACAGACAGCCACCACGGAGGAGCCAGTTA
CATCCCAGAGAGGACGTCCTCCCTGCAGCGGCAGAGGCTCTCTGAAGACTCCCAGACCTCTCTC
CTCTCCAAACCCAGCAGCAGCATCTTTCAGAACTGGCCTAAACCCCCTCTGCCACCACTCCCCA
CTGGGTCTGGGGTCTCCTCTTCAACAGCTGCAGCCCCGGGAGCTACATCCCCTTCAGCCTCATC
TGCCTCAGCTTCCACCAGACACCTGCAGGGTGTGGAATTTGAGATGCGGCCTCCGCTGCTCCGC
CGGGCACCCAGCCCCTCGCTGCTGCCTGCCTCGGATCACAAGGTCAGCCCAGCGCCCAGGCCTT
CCTCTTTGCCCATCCTGCCTTCAGGACCCATCTACCCGGGCCTCTTCGACATCCGTAGCTCTCC
AACCGGAGGGGCGGGAGGCTCGACTGACCCCTTCGCTCCCGTCTTTGTGCCACCACACCCCGGG
ATATCTGGGGGTCTTGGAGGAGCCTTGTCTGGGGCCTCTCGCTCCCTATCACCCACCCGCCTGC
TCTCGCTGCCCCCGGACAAGCCGTTCGGCGCCAAGCCTCTAGGGTTCTGGACCAAGTTTGACGT
CGCCGATTGGCTAGAGTGGCTGGGCTTGTCGGAGCACCGAGCCCAGTTCCTGGACCACGAGATT
GATGGCTCCCATCTGCCTGCCTTGACCAAGGAGGACTATGTGGACCTGGGTGTAACCAGGGTGG
GCCACCGTATGAACATTGACCGGGCTCTCAAATTTTTCCTGGAGAGGTGATGGCTGGCCTGGAC
GGACCAGCCCGTCCATAGGACCCTTGAGCCCGCTGACCTCTGACCTCTGACCCCTCTGACCATC
ATTCCCCCTCTCCCCTCAGGGGGCCAGGGACTCTGCTAAAACTGTGTCCTGCCCCGTCTCCCCA
AGCCTGACTGAGGTCCCCAGGTGGACCGGATGCAGGCCAGACAATGGCACCTCGCAAGAGGTGG
GCAGCTGACACAAGACTGCAAGTGGAGTAGATGGGGGATTAGAAAAAAATGACAAAGGGGTACT
GAAGAAAGAGGGAAAAAGGCTGACTAGGGGTGGGGGAACAGACAGAGCCATAGTGGGTCAGTCC
AGAGCCTGACCTGATGGGGTCCTGGGAAGGTGTGCCCTCCGATTCCATCATTTGCGCCTCTCAA
ATAACCCTTTTCACCTCTCTAGGCCCCTCAGCCTTCCCACTCTCCTTGGCTCACTCAGCTGCCC
AGCCCCCTGCCTCTTGCACGCCTGTTCCCCTCCCTGGCTGCAGTTTTTGCACAAGCTTGCCCCC
TGGCTGTCTTGCACACCTCCGGCCTGTAAGGCCCTCTCAGCTTCCCAACACGCTGCATTCGGTT
TTT

hide sequence

RefSeq Acc Id:

XM_017589761 ⟹ XP_017445250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,416 - 103,990,690 (+)	NCBI
mRatBN7.2	1	94,807,879 - 94,854,248 (+)	NCBI
Rnor_6.0	1	100,297,137 - 100,342,750 (+)	NCBI

Sequence:

show sequence

GGGGGAGGGGGGAGGGGCCGGGCGCCGCCGACCGGGACTCAGCAGCCCCGCCAGGCAGCTGCCT
GTGATGCTGCTGTCCCCCGTCGCCCCGTGGCCCCACGATGACCCACAGCCCCGCGACAAGCGAG
GACGAGGAACGCCACAGTGCCAGCGAGTGTCCCGAGGGGGGCTCAGAATCGGACAGCTCCCCAG
ACGGACCAGGAAGAGGCCCCCAGGGTACTCGGGGCCGGGGCAGCGGAGCACCTGGTAACCTGGC
CTCTACCCGAGGCCTCCAGGGACGCTCCATGTCTGTCCCTGACGACGCCCACTTCAGCATGATG
GTTTTCAGGATTGGCATCCCTGACTTGCACCAGACGAAATGCCTACGCTTCAACCCGGATGCTA
CCATCTGGACAGCCAAACAGCAAGTACTCTGTGCCCTGAGCGAGAGTCTACAGGATGTGCTAAA
CTATGGACTGTTCCAGCCAGCCACCTCAGGCCGGGATGCCAACTTCCTGGAGGAAGAGAGGCTT
CTAAGAGAGTACCCTCAGTCCTTTGAGAAAGGGGTACCCTACCTGGAGTTCCGCTACAAGACCC
GAGTCTACAAACAGACCAACCTGGATGAGAAACAGCTGGCCAAACTGCACACGAAGACGGGGTT
GAAGAAGTTCCTTGAATATGTGCAGCTCGGGACGTCTGACAAGGTGGCGAGGCTGCTGGACAAG
GGGCTGGACCCCAATTACCACGACTCAGATTCAGGAGAGACACCTTTGACCCTGGCGGCCCAGA
CTGAAGGCTCAGTAGAGGTGATTCGGACGCTGTGCCTGGGCGGGGCGCACATAGACTTCAGGGC
CCGGGATGGCATGACAGCGCTGCACAAAGCTGCATGTGCTAGGCACTGCCTGGCACTCACGGCA
CTTCTGGACCTTGGGGGCTCCCCCAACTACAAGGATCGACGAGGGCTGACCCCCCTGTTCCACA
CAGCTATGGTTGGGGGAGACCCCCGCTGTTGTGAGCTACTTCTGTACAACAGGGCCCAGCTGGG
CATTGCAGATGAGAACGGCTGGCAGGAAATCCACCAGGCCTGCCAACGAGGGCACTCTCAGCAC
CTGGAACACCTGCTCTTCTATGGGGCTGAGCCTGGAGCCCAGAATGCCTCAGGAAACACGGCCC
TGCACATCTGTGCTCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTTTATCGCGGAGCAAA
CAAGGATGTGAAAAATAACAACGGACAGACACCCTTCCAGGTGGCTGTGATTGCTGGGAATTTT
GAGCTGGGGGAACTGATTCGTAACCATCGGGAACAGGATGTGGTACCCTTCCAGGAGTCCCCCA
AGTATGCAGCCCGGCGTCGGGGACCCCCAGGCGCAGGGCTGACTGTACCCCCAGCGCTGCTGCG
GGCTAACAGCGACACGAGCATGGCGCTGCCTGATTGGATGGTGTTTTCGGCCCCAGGGGCCTCA
TCCTCTGGGACCCCTGGCCCTACCTCAGGACCCCAGGGCCAGTCACAGCCCTCGGCCCCCAGCA
CCAAGCTCAGTAGTGGGACCCTCAGAAGTGCCAGCAGCCCCCGAGGTGCCCGGGCACGCTCCCC
ATCCCGGGGGAGACATCCTGAAGATGCCAAGAGACAACCTCGAGGCCGACCCAGCTCCAGCGGG
ACACCCCGAGATGGGCCGGCTGGGGGAACTGGGGGCTCAGGGGGCCCTGGGGGCTCCCTGGGTA
GCAGAGGCAGACGTAGGAAGCTCTATTCAGCGGTACCTGGACGCTCCTTCATGGCGGTGAAGTC
ATACCAGGCGCAAGGCGAGGGGGAGATCTCTCTGAGTAAAGGCGAAAAGATCAAAGTGCTCAGC
ATCGGGGAAGGAGGCTTCTGGGAAGGCCAGGTCAAAGGTCGAGTTGGCTGGTTCCCTTCTGACT
GCCTAGAAGAGGTGGCAAACCGTTCCCAGGAGGGAAGACAAGAAAGCCGAAGTGACAAGGCAAA
GAGACTCTTCAGGCATTACACAGTGGGCTCTTACGACAGCTTCGATGCCCCAAGTCTGATCGAT
GGGATTGACTCAGGGAGTGATTACATCATCAAGGAGAAGACAGTCTTACTGCAGAAGAAGGACA
GTGAGGGGTTCGGGTTCGTGCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAATTCACCCC
CACCCCGGCCTTCCCGGCGCTGCAGTACCTCGAGTCTGTGGACGAGGGTGGCGTGGCATGGCGG
GCTGGACTACGGATGGGAGACTTCCTCATCGAGGTGAATGGACAGAATGTAGTGAAGGTTGGCC
ACCGCCAGGTGGTCAACATGATCCGACAGGGAGGCAACACACTGATGGTCAAGGTGGTGATGGT
GACCAGACACCCAGACATGGACGAGGCTGTCCACAAGAAAGCATCCCAGCAGGCTAAGCGGCTC
CCGCCCCCAGCCATCTCCCTGCGTTCCAAGTCTATGACCTCAGAGCTGGAGGAAATGGTCTCCC
CCTGGAAGAAGAAAATTGAATACGAGCAACAGCCCGCGGCAGTGCCCAGCATGGAGAAAAAGAG
GACTGTGTATCAGATGGCACTCAACAAACTGGATGAGATCTTGGCCGCTGCTCAGCAGACCATC
AGCGCAAGTGAGAGTCCTGGGCCTGGTGGCCTGGCATCCCTGGGCAAGCACCGACCCAAAGGAT
TCTTTGCCACTGAGTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGCCTTC
TTTCCTGCCTCCTGGACCCGGCCTTATGCTCCGGCAGAAATCTATCGGGGCTGCGGAAGACGAC
AGACCCTACCTAGCACCCCCAGCCATGAAATTCAGTCGTAGCCTGTCAGTCCCCGGTTCAGAGG
ACATACCCCCACCACCCACTACATCACCACCAGAGCCGCCCTATAGCACACCTCCGGCCCCCTC
CTCCTCCGGCCGCCTCACTCCCTCGCCTCGGGGAGGGCCCTTTAACCCCAGTTCTGGGGGTCCC
CTTCCCGCCTCCTCCCCTTCATCTTTCGATGGGCCATCTCCTCCTGACACCCGTGGTGGGGGCC
GAGAAAAGAGCCTATATCACAGCGCAGCCCTGCCCCCTGCCCACCACCATCCACCTCATCACCA
CCATCATCACGCGCCACCTCCCCAGCCCCACCATCACCATGCACATCCTCCTCACCCACCGGAG
ATGGAGACAGGAGGTTCCCCCGACGATCCCCCACCTCGATTGGCCCTGGGACCCCAGCCCAGCC
TTCGAGGCTGGCGAGGTGGAGGACCCAGCCCGACCTCGGGGGCCCCATCACCTTCCCACCACAG
TAGCAGCGGAGGCAGCAGCGGCCCTACTCAGGCTCCCGCCCTGCGCTACTTCCAACTGCCCCCG
AGGGCGGCCAGTGCGGCTATGTATGTACCAGCACGTTCCGGCCGCGGTCGCAAGGGCCCACTGG
TCAAGCAGACCAAAGTGGAAGGCGAGCCCCAAAAGGGCAGCATCCCTTCCGCGTCCTCTCCAAC
ATCCCCGGCGTTGCCTCGGTCTGAACCACCTCCGGCCGGGCCGTCGGAGAAAAATTCCATCCCT
ATCCCGACCATCATCATCAAAGCCCCATCTACCAGTAGCAGCGGCCGCAGCAGTCAGGGAAGCA
GCACAGAGGCTGAGCCCCCCACCCAGCCCGATGGCGCGGGCGGCGGCGGATCCTCGCCTAGCCC
TGCACCTGCCACGTCCCCTGTGCCGCCATCCCCGTCGCCCGTGCCCACTCCCGCGTCACCCAGC
GGCCCGGCCACCCTGGATTTCACTAGCCAGTTTGGAGCAGCCCTAGTAGGCGCGGCGCGGAGGG
AGGGAGGCTGGCAGAACGAAGCCCGGCGGCGGTCCACGCTGTTCCTGTCCACCGACGCAGGAGA
TGAGGATGGAGGCGACAGCGGGCTGGGCCCGGGGGGGCCCCCGGGTCCCCGGCTGCGCCATTCC
AAATCCATTGACGAAGGCATGTTCTCCGCAGAGCCGTACCTCCGGCTGGAGTCAGGGGGCAGCA
GTGGGGGCTACGGGGCCTACGCAGCGGGCAGCCGAGCCTACGGGGGCAGCGGGAGCAGCAGCGC
CTTCACCAGCTTCCTCCCCCCGCGGCCCCTGGTGCATCCGCTGACCGGCAAAGCCTTGGATCCC
GCCTCTCCGCTGGGGTTGGCCTTGGCCGCCCGGGAGCGGGCCTTGAAGGAGTCCTCGGAGGGTG
GGGGCACCCCTCAGCCGCCCCCGAGACCTCCATCACCACGCTACGACGCCCCACCGCCTACCCT
TCACCACCACTCGCCCCATTCACCCCATTCGCCACATGCGCGTCACGAGCCAGTGTTGCGCCTC
TGGGGGGACCCCGCGCGCCGGGAGCTGGGGTACCGGGCAGGCCTAGGGAGTCAGGAGAAGGCCC
TTACCGCCAGTCCACCTGCAGCTCGCCGCTCCCTACTGCACCGTCTGCCCCCGACGGCTCCCGG
GGTCGGGCCGCTCCTGCTGCAGCTGGGGCCGGAGCCCCCAACTCCCCATCCTGGGGTGAGCAAG
GCCTGGCGCACAGCAGCCCCGGAGGAGCCGGAGCGGCTGCCGCTGCACGTGCGATTCCTTGAGA
ATTGCCAAGCCCGGCCTCCCCCAGCTGGCACGAGAGGGTCCTCTACTGAAGATGGGCCTGGGGT
CCCGCCTCCCAGCCCTCGCAGAGTCTTGCCAACCTCTCCCACCTCCCCACGAGGCAACGAGGAG
AACGGCCTTCCGCTACTGGTCCTGCCACCGCCAGCCCCTTCGGTGGATGTGGACGACGGCGAGT
TCTTGTTTGCGGAGCCGCTGCCTCCACCCCTGGAGTTTTCCAATAGTTTCGAAAAGCCAGAGTC
GCCTCTCACACCCGGGCCTCCTCACCCACTACCTGACCCTCCCTCCCCGGCTACCCCTCTACCC
GCAGCCCCACCTCCCGCTGTAGCCGCAGCCCCTCCCACCTTGGACTCCACAGCATCCAGCCTGA
CCTCTTACGACAGCGAAGTGGCCACACTGACCCAGGGGGCTCCCGCGGCTCCTGGGGATCCTCC
AGCTCCAGGCCCGCCGGCCCCGGCAGCCCCAGCTCCCCCAGCACCGCAGCCAGGCCCTGATCCT
CCACCTGGCACAGATTCTGGAATTGAGGAGGTGGACAGTCGGAGTAGCAGTGATCACCCGCTGG
AGACCATCAGCAGCGCATCCACACTCAGCAGCTTGTCCGCCGAAGGAGGAGGCAATACAGGGGG
CGTGGCTGGGGGCGGGGCCGGGGTGGCCAGTGGGACGGAGCTCCTGGACACCTACGTTGCCTAC
CTGGATGGCCAGGCCTTCGGGGGCAGTGGAACTCCTGGCCCACCATATCCTCCCCAGCTCATGA
CTCCTTCTAAGCTCCGGGGCAGGGCGCTTGGGACTAGTGGAAATTTAAGACCTGGTCCCAGTGG
GGGACTCCGAGATCCTGTCACCCCCACCAGCCCCACTGTCTCTGTGACCGGAGCTGGAACAGAT
GGGCTACTGGCCTTGAGTGCTTGCCCTGGACCCTCAACGGCAGGTGTGGCAGGGGGTCCCGTGG
CAGTTGAGCCAGAAGTCCCGCCTGTACCTTTGCCCGCTGCCTCATCCCTGCCTCGGAAGCTATT
ACCGTGGGAGGAGGGTCCGGGACCACCACCACCACCCCTGCCAGGGCCCCTGTCCCAGCCTCAG
GCCTCTGCCTTGGCCACGGTCAAAGCCAGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGT
TTGGTGGGTCCTCTACCGCAGGAGGAGCTCTGCCTTGGGCTCGGGGAGGCAGCGGGGGCAGCAC
AGACAGCCACCACGGAGGAGCCAGTTACATCCCAGAGAGGACGTCCTCCCTGCAGCGGCAGAGG
CAGTATAGAATAGTGGTTAAGAGCTCAGACTTTGGTGACTTCTAACTGGGCTCTGCCACTCCCC
GGCTGTGTGTCCTTAGGCTCTCTGAAGACTCCCAGACCTCTCTCCTCTCCAAACCCAGCAGCAG
CATCTTTCAGAACTGGCCTAAACCCCCTCTGCCAC

hide sequence

RefSeq Acc Id:

XM_039091745 ⟹ XP_038947673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,417 - 103,993,887 (+)	NCBI
mRatBN7.2	1	94,807,880 - 94,857,356 (+)	NCBI

RefSeq Acc Id:

XM_039091758 ⟹ XP_038947686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,960,939 - 103,993,887 (+)	NCBI
mRatBN7.2	1	94,824,401 - 94,857,356 (+)	NCBI

RefSeq Acc Id:

XM_039091761 ⟹ XP_038947689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,970,163 - 103,993,887 (+)	NCBI
mRatBN7.2	1	94,834,841 - 94,857,356 (+)	NCBI

RefSeq Acc Id:

XM_039091766 ⟹ XP_038947694

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,969,931 - 103,993,887 (+)	NCBI
mRatBN7.2	1	94,833,053 - 94,857,356 (+)	NCBI

RefSeq Acc Id:

XM_063274933 ⟹ XP_063131003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,944,417 - 103,993,887 (+)	NCBI

RefSeq Acc Id:

XM_063274947 ⟹ XP_063131017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,970,160 - 103,993,887 (+)	NCBI

RefSeq Acc Id:

XM_063274951 ⟹ XP_063131021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,969,637 - 103,993,887 (+)	NCBI

RefSeq Acc Id:

XM_063274952 ⟹ XP_063131022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,967,169 - 103,993,887 (+)	NCBI

RefSeq Acc Id:

XM_063274953 ⟹ XP_063131023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	103,967,165 - 103,993,887 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_113939	(Get FASTA)	NCBI Sequence Viewer
	XP_008757638	(Get FASTA)	NCBI Sequence Viewer
	XP_017445249	(Get FASTA)	NCBI Sequence Viewer
	XP_017445250	(Get FASTA)	NCBI Sequence Viewer
	XP_038947673	(Get FASTA)	NCBI Sequence Viewer
	XP_038947686	(Get FASTA)	NCBI Sequence Viewer
	XP_038947689	(Get FASTA)	NCBI Sequence Viewer
	XP_038947694	(Get FASTA)	NCBI Sequence Viewer
	XP_063131003	(Get FASTA)	NCBI Sequence Viewer
	XP_063131017	(Get FASTA)	NCBI Sequence Viewer
	XP_063131021	(Get FASTA)	NCBI Sequence Viewer
	XP_063131022	(Get FASTA)	NCBI Sequence Viewer
	XP_063131023	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD04569	(Get FASTA)	NCBI Sequence Viewer
	AAD29417	(Get FASTA)	NCBI Sequence Viewer
	AAD42975	(Get FASTA)	NCBI Sequence Viewer
	AAF02498	(Get FASTA)	NCBI Sequence Viewer
	EDM07502	(Get FASTA)	NCBI Sequence Viewer
	EDM07503	(Get FASTA)	NCBI Sequence Viewer
	EDM07504	(Get FASTA)	NCBI Sequence Viewer
	EDM07505	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026100
	ENSRNOP00000026100.3
	ENSRNOP00000039860.3
	ENSRNOP00000075838.1
	ENSRNOP00000084101.1
GenBank Protein	Q9WV48	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_113939 ⟸ NM_031751

- UniProtKB:

Q9WU13 (UniProtKB/Swiss-Prot), Q9QZZ8 (UniProtKB/Swiss-Prot), Q9WUE8 (UniProtKB/Swiss-Prot), Q9WV48 (UniProtKB/Swiss-Prot), A6JAM9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGRSMSV
PDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRD
ANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTS
DKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAAC
ARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQ
ACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKETCARILLYRGANKDVKNNNGQTPF
QVAVIAGNFELGELIRNHREQDVVPFQESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDW
MVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQ
PRGRPSSSGTPRDGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLS
KGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYD
SFDAPSLIDGIDSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLES
VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHK
KASQQAKRLPPPAISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDE
ILAAAQQTISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQ
KSIGAAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGG
PFNPSSGGPLPASSPSSFDGPSPPDTRGGGREKSLYHSAALPPAHHHPPHHHHHHAPPPQPHHH
HAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPTQAP
ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSIPSASSPTSPALPRSEPPPA
GPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPATSPVPPSPS
PVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDSGLGPGG
PPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGSSSAFTSFLPPRPLVH
PLTGKALDPASPLGLALAARERALKESSEGGGTPQPPPRPPSPRYDAPPPTLHHHSPHSPHSPH
ARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLPPTAPGVGPLLLQLGPEP
PTPHPGVSKAWRTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTS
PTSPRGNEENGLPLLVLPPPAPSVDVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPD
PPSPATPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAP
PAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGT
ELLDTYVAYLDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPT
VSVTGAGTDGLLALSACPGPSTAGVAGGPVAVEPEVPPVPLPAASSLPRKLLPWEEGPGPPPPP
LPGPLSQPQASALATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPE
RTSSLQRQRLSEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGATSPSASSASA
STRHLQGVEFEMRPPLLRRAPSPSLLPASDHKVSPAPRPSSLPILPSGPIYPGLFDIRSSPTGG
AGGSTDPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKPLGFWTKFDVADW
LEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER

hide sequence

RefSeq Acc Id:	XP_008757638 ⟸ XM_008759416
- Peptide Label:	isoform X4
- UniProtKB:	A6JAM9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGRSMSV PDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRD ANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTS DKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAAC ARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQ ACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKETCARILLYRGANKDVKNNNGQTPF QVAVIAGNFELGELIRNHREQDVVPFQESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDW MVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQ PRGRPSSSGTPRDGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLS KGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYD SFDAPSLIDGIDSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLES VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHK KASQQAKRLPPPAISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDE ILAAAQQTISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQ KSIGAAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGG PFNPSSGGPLPASSPSSFDGPSPPDTRGGGREKSLYHSAALPPAHHHPPHHHHHHAPPPQPHHH HAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPTQAP ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSIPSASSPTSPALPRSEPPPA GPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPATSPVPPSPS PVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDSGLGPGG PPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGSSSAFTSFLPPRPLVH PLTGKALDPASPLGLALAARERALKESSEGGGTPQPPPRPPSPRYDAPPPTLHHHSPHSPHSPH ARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLPPTAPGVGPLLLQLGPEP PTPHPGVSKAWRTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTS PTSPRGNEENGLPLLVLPPPAPSVDVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPD PPSPATPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAP PAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGT ELLDTYVAYLDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPT VSVTGAGTDGLLALSACPGPSTAGVAGGPVAVEPEVPPVPLPAASSLPRKLLPWEEGPGPPPPP LPGPLSQPQASALATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPE RTSSLQRQRKRTPKKHTFSSMVTITHGPR hide sequence

RefSeq Acc Id:	XP_017445249 ⟸ XM_017589760
- Peptide Label:	isoform X2
- UniProtKB:	A6JAN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGRSMSV PDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRD ANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTS DKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAAC ARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQ ACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKETCARILLYRGANKDVKNNNGQTPF QVAVIAGNFELGELIRNHREQDVVPFQESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDW MVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQ PRGRPSSSGTPRDGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLS KGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYD SFDAPSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKASQQAKRL PPPAISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDEILAAAQQTI SASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQKSIGAAEDD RPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSGGP LPASSPSSFDGPSPPDTRGGGREKSLYHSAALPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPE METGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPTQAPALRYFQLPP RAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSIPSASSPTSPALPRSEPPPAGPSEKNSIP IPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPATSPVPPSPSPVPTPASPS GPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDSGLGPGGPPGPRLRHS KSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGSSSAFTSFLPPRPLVHPLTGKALDP ASPLGLALAARERALKESSEGGGTPQPPPRPPSPRYDAPPPTLHHHSPHSPHSPHARHEPVLRL WGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLPPTAPGVGPLLLQLGPEPPTPHPGVSK AWRTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTSPTSPRGNEE NGLPLLVLPPPAPSVDVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPSPATPLP AAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAPPAPQPGPDP PPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGTELLDTYVAY LDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPTVSVTGAGTD GLLALSACPGPSTAGVAGGPVAVEPEVPPVPLPAASSLPRKLLPWEEGPGPPPPPLPGPLSQPQ ASALATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPERTSSLQRQR LSEDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGATSPSASSASASTRHLQGVE FEMRPPLLRRAPSPSLLPASDHKVSPAPRPSSLPILPSGPIYPGLFDIRSSPTGGAGGSTDPFA PVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKPLGFWTKFDVADWLEWLGLSEH RAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER hide sequence

RefSeq Acc Id:	XP_017445250 ⟸ XM_017589761
- Peptide Label:	isoform X5
- UniProtKB:	A6JAM9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGRSMSV PDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRD ANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTS DKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAAC ARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQ ACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKETCARILLYRGANKDVKNNNGQTPF QVAVIAGNFELGELIRNHREQDVVPFQESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDW MVFSAPGASSSGTPGPTSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQ PRGRPSSSGTPRDGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSYQAQGEGEISLS KGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGRQESRSDKAKRLFRHYTVGSYD SFDAPSLIDGIDSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLES VDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHK KASQQAKRLPPPAISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDE ILAAAQQTISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQ KSIGAAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGG PFNPSSGGPLPASSPSSFDGPSPPDTRGGGREKSLYHSAALPPAHHHPPHHHHHHAPPPQPHHH HAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPTQAP ALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGSIPSASSPTSPALPRSEPPPA GPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPDGAGGGGSSPSPAPATSPVPPSPS PVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTLFLSTDAGDEDGGDSGLGPGG PPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGSSSAFTSFLPPRPLVH PLTGKALDPASPLGLALAARERALKESSEGGGTPQPPPRPPSPRYDAPPPTLHHHSPHSPHSPH ARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLPPTAPGVGPLLLQLGPEP PTPHPGVSKAWRTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTS PTSPRGNEENGLPLLVLPPPAPSVDVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPD PPSPATPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAP PAPQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGT ELLDTYVAYLDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPT VSVTGAGTDGLLALSACPGPSTAGVAGGPVAVEPEVPPVPLPAASSLPRKLLPWEEGPGPPPPP LPGPLSQPQASALATVKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPE RTSSLQRQRQYRIVVKSSDFGDF hide sequence

Ensembl Acc Id:

ENSRNOP00000075838 ⟸ ENSRNOT00000092327

Ensembl Acc Id:

ENSRNOP00000026100 ⟸ ENSRNOT00000026100

Ensembl Acc Id:

ENSRNOP00000039860 ⟸ ENSRNOT00000044257

RefSeq Acc Id:	XP_038947673 ⟸ XM_039091745
- Peptide Label:	isoform X3
- UniProtKB:	A6JAN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947686 ⟸ XM_039091758
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038947694 ⟸ XM_039091766
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038947689 ⟸ XM_039091761
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000084101 ⟸ ENSRNOT00000104599

RefSeq Acc Id:	XP_063131003 ⟸ XM_063274933
- Peptide Label:	isoform X1
- UniProtKB:	A6JAN0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131023 ⟸ XM_063274953
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063131022 ⟸ XM_063274952
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063131021 ⟸ XM_063274951
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063131017 ⟸ XM_063274947
- Peptide Label:	isoform X7

Protein Domains

PDZ SAM SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WV48-F1-model_v2	AlphaFold	Q9WV48	1-2167	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621011	AgrOrtholog
BioCyc Gene	G2FUF-59776	BioCyc
Ensembl Genes	ENSRNOG00000019207	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000026100	ENTREZGENE
	ENSRNOT00000026100.6	UniProtKB/Swiss-Prot
	ENSRNOT00000044257.6	UniProtKB/Swiss-Prot
	ENSRNOT00000092327.2	UniProtKB/Swiss-Prot
	ENSRNOT00000104599.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	1.25.40.20	UniProtKB/Swiss-Prot
	2.30.42.10	UniProtKB/Swiss-Prot
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	PDZ_6	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
	SHANK	UniProtKB/Swiss-Prot
KEGG Report	rno:78957	UniProtKB/Swiss-Prot
NCBI Gene	78957	ENTREZGENE
PANTHER	SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN	UniProtKB/Swiss-Prot
	SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	Ank_2	UniProtKB/Swiss-Prot
	PDZ_6	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
	SH3_2	UniProtKB/Swiss-Prot
PhenoGen	Shank1	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000019207	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
	PDZ	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF48403	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
	SSF50156	UniProtKB/Swiss-Prot
UniProt	A6JAM9	ENTREZGENE, UniProtKB/TrEMBL
	A6JAN0	ENTREZGENE, UniProtKB/TrEMBL
	A6JAN1	ENTREZGENE, UniProtKB/TrEMBL
	A6JAN2_RAT	UniProtKB/TrEMBL
	Q9QZZ8	ENTREZGENE
	Q9WU13	ENTREZGENE
	Q9WUE8	ENTREZGENE
	Q9WV48	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q9QZZ8	UniProtKB/Swiss-Prot
	Q9WU13	UniProtKB/Swiss-Prot
	Q9WUE8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-11-04	Shank1	SH3 and multiple ankyrin repeat domains 1	Shank1	SH3/ankyrin domain gene 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-22	Shank1	SH3/ankyrin domain gene 1	Shank1	SH3 and multiple ankyrin repeat domains 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Shank1	SH3 and multiple ankyrin repeat domains 1		Shank1	Name updated	1299863	APPROVED
2002-08-07	Shank1	Shank1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains ankyrin repeats, an SH3 domain, a PDZ domain, a long proline-rich region and an SAM domain	633974

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)